Wall clock time and date at job start Tue Mar 31 2020 15:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 H 1.09003 * 109.47471 * 55.00663 * 3 2 1 5 5 C 1.50704 * 109.46800 * 175.00192 * 3 2 1 6 6 H 1.07998 * 120.00207 * 120.00254 * 5 3 2 7 7 C 1.37880 * 119.99773 * 299.99798 * 5 3 2 8 8 N 1.31509 * 120.00360 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99806 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47043 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47201 * 120.00243 * 9 7 5 12 12 H 1.48505 * 109.47268 * 240.00406 * 9 7 5 13 13 N 1.46497 * 109.47401 * 295.00114 * 3 2 1 14 14 C 1.34768 * 120.00186 * 85.00146 * 13 3 2 15 15 O 1.21553 * 119.99854 * 0.02562 * 14 13 3 16 16 C 1.47920 * 120.00430 * 180.02562 * 14 13 3 17 17 C 1.39474 * 119.65820 * 179.97438 * 16 14 13 18 18 C 1.38316 * 119.13405 * 179.76590 * 17 16 14 19 19 C 1.39262 * 118.44226 * 0.50063 * 18 17 16 20 20 O 1.35703 * 120.38105 * 179.78118 * 19 18 17 21 21 C 1.35880 * 118.00219 * 89.82708 * 20 19 18 22 22 C 1.38756 * 120.05687 * 0.22621 * 21 20 19 23 23 C 1.38143 * 119.93706 * 179.79623 * 22 21 20 24 24 C 1.38266 * 120.06145 * 0.46188 * 23 22 21 25 25 C 1.38273 * 120.11576 * 359.79465 * 24 23 22 26 26 C 1.38141 * 120.05857 * 359.96957 * 25 24 23 27 27 C 1.39257 * 119.22901 * 359.50020 * 19 18 17 28 28 N 1.31369 * 120.80525 * 0.25317 * 27 19 18 29 29 H 1.08999 * 109.46752 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46965 * 299.99650 * 1 2 3 31 31 H 1.09000 * 109.47542 * 59.99676 * 1 2 3 32 32 H 1.08999 * 109.46965 * 240.00350 * 2 1 3 33 33 H 1.09004 * 109.47311 * 119.99595 * 2 1 3 34 34 H 0.96996 * 120.00405 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99879 * 264.99914 * 13 3 2 36 36 H 1.07998 * 120.43261 * 0.02804 * 17 16 14 37 37 H 1.07993 * 120.77969 * 180.25212 * 18 17 16 38 38 H 1.07995 * 120.03242 * 0.02562 * 22 21 20 39 39 H 1.08000 * 119.96701 * 180.25303 * 23 22 21 40 40 H 1.08002 * 119.94624 * 179.76577 * 24 23 22 41 41 H 1.07998 * 119.97155 * 180.02562 * 25 24 23 42 42 H 1.07994 * 120.03123 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.59624 * 180.23565 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8814 1.3818 10 1 6.5986 1.5475 0.1947 11 1 6.3990 1.6168 2.6102 12 1 6.4971 -0.5174 1.4628 13 7 1.6523 2.0976 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3411 2.6326 -0.4319 16 6 0.0434 3.3253 -2.6310 17 6 -1.2183 3.9092 -2.7424 18 6 -1.5714 4.5285 -3.9277 19 6 -0.6508 4.5350 -4.9725 20 8 -0.9578 5.1276 -6.1541 21 6 -0.6555 6.4437 -6.3054 22 6 -0.0467 7.1402 -5.2712 23 6 0.2634 8.4771 -5.4292 24 6 -0.0409 9.1235 -6.6130 25 6 -0.6524 8.4330 -7.6432 26 6 -0.9602 7.0948 -7.4922 27 6 0.5907 3.9316 -4.7887 28 7 0.8968 3.3561 -3.6481 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 2.9494 35 1 2.2718 2.1233 -1.9977 36 1 -1.9090 3.8818 -1.9126 37 1 -2.5399 4.9926 -4.0416 38 1 0.1878 6.6368 -4.3450 39 1 0.7410 9.0187 -4.6260 40 1 0.1989 10.1696 -6.7331 41 1 -0.8886 8.9401 -8.5669 42 1 -1.4382 6.5561 -8.2970 43 1 1.3106 3.9365 -5.5937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558659394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:13 Heat of formation + Delta-G solvation = -3.264574 kcal Electronic energy + Delta-G solvation = -26380.289347 eV Core-core repulsion = 22584.198970 eV Total energy + Delta-G solvation = -3796.090377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43119 -39.96902 -38.63356 -37.71007 -35.13232 -32.88801 -32.21224 -31.62210 -31.18936 -30.70327 -29.76947 -27.05417 -24.88606 -23.93762 -23.11082 -22.95702 -22.29669 -20.74540 -19.41299 -19.07100 -18.12230 -17.26386 -17.14871 -16.25567 -16.08435 -15.34873 -14.99705 -14.92275 -14.79307 -14.53684 -14.23150 -14.17466 -13.82023 -13.66610 -13.43381 -13.23778 -12.73714 -12.66396 -12.09081 -12.02708 -11.95494 -11.53129 -11.35872 -11.26145 -10.96871 -10.85124 -10.33427 -10.20220 -10.14220 -9.97795 -9.65065 -9.37030 -9.24084 -9.13771 -9.04739 -8.61399 -8.51066 -7.86057 -6.12677 -4.21607 0.34865 0.94830 1.00349 1.04481 2.63266 3.14991 3.24501 3.32490 3.35780 3.41373 3.77984 3.99047 4.22009 4.36422 4.40931 4.49628 4.56143 4.77658 4.80125 4.83543 5.01447 5.05924 5.18349 5.20486 5.36422 5.53423 5.63543 5.70881 5.84613 5.92101 6.05060 6.17298 6.18397 6.38112 6.44415 6.49622 6.63855 7.03279 7.14338 7.17303 7.32194 7.38740 7.53120 7.64149 7.74885 7.88921 8.16010 8.62394 8.74752 9.04090 9.45262 10.92824 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.002588 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.286790 B =10818.256696 C =11778.475834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.550 3.450 15 O -0.540 6.540 16 C 0.098 3.902 17 C -0.104 4.104 18 C -0.089 4.089 19 C 0.038 3.962 20 O -0.253 6.253 21 C 0.120 3.880 22 C -0.193 4.193 23 C -0.080 4.080 24 C -0.154 4.154 25 C -0.084 4.084 26 C -0.145 4.145 27 C 0.099 3.901 28 N -0.439 5.439 29 H 0.024 0.976 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.264 0.736 35 H 0.400 0.600 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 13.684 -18.090 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.165 3.835 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.326 5.326 14 C 0.333 3.667 15 O -0.418 6.418 16 C -0.041 4.041 17 C -0.124 4.124 18 C -0.115 4.115 19 C -0.007 4.007 20 O -0.164 6.164 21 C 0.078 3.922 22 C -0.211 4.211 23 C -0.098 4.098 24 C -0.172 4.172 25 C -0.102 4.102 26 C -0.164 4.164 27 C -0.061 4.061 28 N -0.151 5.151 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.234 0.766 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.550 13.021 -17.213 23.215 hybrid contribution 0.488 0.359 -0.299 0.676 sum -8.062 13.380 -17.512 23.467 Atomic orbital electron populations 1.21847 0.98366 0.98190 1.01134 1.21944 0.92607 0.99603 1.02508 1.18919 0.94538 0.89328 0.80676 0.93038 1.21262 0.90541 1.38953 1.06335 0.91867 1.24879 0.98667 0.94768 0.95345 1.69895 1.35062 1.37671 1.09374 0.86392 0.84815 0.77782 0.78127 1.19670 1.20905 1.20861 1.46448 1.13951 1.53348 1.18849 1.17681 0.83701 0.79992 0.85351 1.90779 1.51779 1.60571 1.38684 1.21906 0.91262 0.96677 0.94222 1.22131 0.96993 0.95234 0.98090 1.21866 1.00239 0.98019 0.91333 1.19898 0.95322 0.99311 0.86139 1.84332 1.77910 1.21450 1.32680 1.19234 0.96069 0.82042 0.94865 1.21352 1.04302 0.96201 0.99284 1.21016 0.97512 0.93657 0.97610 1.21135 1.01685 1.00405 0.93950 1.20986 0.97115 0.93127 0.98985 1.20438 1.04927 0.94823 0.96207 1.23150 0.93671 0.94147 0.95160 1.67762 1.33688 1.14354 0.99292 0.95699 0.93042 0.94457 0.94857 0.88068 0.92602 0.76582 0.82529 0.83516 0.85538 0.85512 0.85725 0.85159 0.84944 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 N -0.68 -14.60 5.01 -55.85 -0.28 -14.88 16 14 C 0.55 11.13 6.37 -12.30 -0.08 11.05 16 15 O -0.54 -12.17 13.45 5.32 0.07 -12.09 16 16 C 0.10 1.59 6.74 -83.02 -0.56 1.03 16 17 C -0.10 -1.39 9.62 -39.09 -0.38 -1.77 16 18 C -0.09 -0.99 10.03 -39.17 -0.39 -1.38 16 19 C 0.04 0.44 4.00 -38.82 -0.16 0.29 16 20 O -0.25 -2.82 9.99 -2.95 -0.03 -2.85 16 21 C 0.12 1.24 6.67 -39.20 -0.26 0.98 16 22 C -0.19 -1.96 9.20 -39.42 -0.36 -2.33 16 23 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 24 C -0.15 -1.15 10.04 -39.56 -0.40 -1.55 16 25 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16 26 C -0.15 -1.25 9.99 -39.42 -0.39 -1.64 16 27 C 0.10 1.23 11.04 -17.37 -0.19 1.04 16 28 N -0.44 -6.62 9.52 -9.67 -0.09 -6.71 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 31 H 0.04 0.81 5.65 -51.93 -0.29 0.51 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.40 8.01 7.86 -40.82 -0.32 7.69 16 36 H 0.16 2.01 7.63 -52.49 -0.40 1.61 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.13 1.38 6.68 -52.49 -0.35 1.02 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -29.85 364.01 -8.98 -38.83 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.40 Total: 9.05 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -4.34 Total: -8.53 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.25 Total: -45.49 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.04 Total: -14.95 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.85 -8.98 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558659394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.566 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds