Wall clock time and date at job start Tue Mar 31 2020 15:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 H 1.09003 * 109.47471 * 55.00663 * 3 2 1 5 5 C 1.50704 * 109.46800 * 175.00192 * 3 2 1 6 6 H 1.07998 * 120.00207 * 120.00254 * 5 3 2 7 7 C 1.37880 * 119.99773 * 299.99798 * 5 3 2 8 8 N 1.31509 * 120.00360 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99806 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47043 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47201 * 120.00243 * 9 7 5 12 12 H 1.48505 * 109.47268 * 240.00406 * 9 7 5 13 13 N 1.46497 * 109.47401 * 295.00114 * 3 2 1 14 14 C 1.34768 * 120.00186 * 85.00146 * 13 3 2 15 15 O 1.21553 * 119.99854 * 0.02562 * 14 13 3 16 16 C 1.47920 * 120.00430 * 180.02562 * 14 13 3 17 17 C 1.39474 * 119.65820 * 179.97438 * 16 14 13 18 18 C 1.38316 * 119.13405 * 179.76590 * 17 16 14 19 19 C 1.39262 * 118.44226 * 0.50063 * 18 17 16 20 20 O 1.35703 * 120.38105 * 179.78118 * 19 18 17 21 21 C 1.35880 * 118.00219 * 89.82708 * 20 19 18 22 22 C 1.38756 * 120.05687 * 0.22621 * 21 20 19 23 23 C 1.38143 * 119.93706 * 179.79623 * 22 21 20 24 24 C 1.38266 * 120.06145 * 0.46188 * 23 22 21 25 25 C 1.38273 * 120.11576 * 359.79465 * 24 23 22 26 26 C 1.38141 * 120.05857 * 359.96957 * 25 24 23 27 27 C 1.39257 * 119.22901 * 359.50020 * 19 18 17 28 28 N 1.31369 * 120.80525 * 0.25317 * 27 19 18 29 29 H 1.08999 * 109.46752 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46965 * 299.99650 * 1 2 3 31 31 H 1.09000 * 109.47542 * 59.99676 * 1 2 3 32 32 H 1.08999 * 109.46965 * 240.00350 * 2 1 3 33 33 H 1.09004 * 109.47311 * 119.99595 * 2 1 3 34 34 H 0.96996 * 120.00405 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99879 * 264.99914 * 13 3 2 36 36 H 1.07998 * 120.43261 * 0.02804 * 17 16 14 37 37 H 1.07993 * 120.77969 * 180.25212 * 18 17 16 38 38 H 1.07995 * 120.03242 * 0.02562 * 22 21 20 39 39 H 1.08000 * 119.96701 * 180.25303 * 23 22 21 40 40 H 1.08002 * 119.94624 * 179.76577 * 24 23 22 41 41 H 1.07998 * 119.97155 * 180.02562 * 25 24 23 42 42 H 1.07994 * 120.03123 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.59624 * 180.23565 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8814 1.3818 10 1 6.5986 1.5475 0.1947 11 1 6.3990 1.6168 2.6102 12 1 6.4971 -0.5174 1.4628 13 7 1.6523 2.0976 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3411 2.6326 -0.4319 16 6 0.0434 3.3253 -2.6310 17 6 -1.2183 3.9092 -2.7424 18 6 -1.5714 4.5285 -3.9277 19 6 -0.6508 4.5350 -4.9725 20 8 -0.9578 5.1276 -6.1541 21 6 -0.6555 6.4437 -6.3054 22 6 -0.0467 7.1402 -5.2712 23 6 0.2634 8.4771 -5.4292 24 6 -0.0409 9.1235 -6.6130 25 6 -0.6524 8.4330 -7.6432 26 6 -0.9602 7.0948 -7.4922 27 6 0.5907 3.9316 -4.7887 28 7 0.8968 3.3561 -3.6481 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 2.9494 35 1 2.2718 2.1233 -1.9977 36 1 -1.9090 3.8818 -1.9126 37 1 -2.5399 4.9926 -4.0416 38 1 0.1878 6.6368 -4.3450 39 1 0.7410 9.0187 -4.6260 40 1 0.1989 10.1696 -6.7331 41 1 -0.8886 8.9401 -8.5669 42 1 -1.4382 6.5561 -8.2970 43 1 1.3106 3.9365 -5.5937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558659394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:12 Heat of formation + Delta-G solvation = -20.377534 kcal Electronic energy + Delta-G solvation = -26381.031421 eV Core-core repulsion = 22584.198970 eV Total energy + Delta-G solvation = -3796.832451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37075 -41.13355 -39.91639 -38.56864 -36.99635 -34.44605 -33.63996 -32.97785 -32.23021 -31.70863 -30.66466 -28.96283 -26.11548 -25.01694 -24.80531 -23.61855 -23.27681 -22.23250 -21.23713 -19.87222 -19.68227 -18.36140 -18.05339 -17.77125 -17.11772 -16.91511 -16.46497 -16.38900 -15.83080 -15.54909 -15.40259 -15.13865 -14.90227 -14.70980 -14.59779 -14.40308 -14.34219 -13.77724 -13.73897 -13.44848 -13.18877 -12.90123 -12.84295 -12.71002 -12.56502 -12.17490 -12.08443 -12.00224 -11.61851 -11.24625 -11.13869 -11.05775 -10.69319 -10.54571 -10.23757 -10.00081 -9.67547 -9.31926 -8.17237 -6.34103 -0.74246 -0.00905 0.33989 0.39080 1.43481 1.44769 1.52608 1.56899 2.04021 2.28110 2.47805 2.70546 2.77920 3.08902 3.12432 3.49285 3.73915 3.77993 3.84049 3.91233 3.96443 4.25668 4.39724 4.47520 4.48316 4.54489 4.55728 4.63412 4.71286 4.77746 4.81049 5.04248 5.04801 5.18548 5.24114 5.28218 5.41260 5.45352 5.51233 5.56841 5.58800 5.76658 5.84651 5.87263 6.14184 6.33059 6.49897 6.71836 6.91522 7.28252 7.44155 8.88422 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.002588 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.286790 B =10818.256696 C =11778.475834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.683 5.683 14 C 0.551 3.449 15 O -0.570 6.570 16 C 0.071 3.929 17 C -0.097 4.097 18 C -0.078 4.078 19 C 0.056 3.944 20 O -0.257 6.257 21 C 0.100 3.900 22 C -0.208 4.208 23 C -0.092 4.092 24 C -0.152 4.152 25 C -0.081 4.081 26 C -0.149 4.149 27 C 0.097 3.903 28 N -0.453 5.453 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.266 0.734 35 H 0.407 0.593 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 15.372 -20.952 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.330 5.330 14 C 0.336 3.664 15 O -0.450 6.450 16 C -0.066 4.066 17 C -0.118 4.118 18 C -0.103 4.103 19 C 0.011 3.989 20 O -0.168 6.168 21 C 0.058 3.942 22 C -0.227 4.227 23 C -0.110 4.110 24 C -0.170 4.170 25 C -0.098 4.098 26 C -0.168 4.168 27 C -0.064 4.064 28 N -0.166 5.166 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.178 0.822 37 H 0.194 0.806 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.164 0.836 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.654 14.723 -20.101 26.377 hybrid contribution 0.446 0.001 0.437 0.624 sum -8.208 14.723 -19.664 25.901 Atomic orbital electron populations 1.21685 0.96784 0.99387 1.00295 1.21793 0.93955 0.98856 1.01407 1.18523 0.93938 0.89413 0.80907 0.97584 1.21556 0.91300 1.39109 1.06718 0.91487 1.25730 1.03294 0.94275 0.94924 1.70031 1.36955 1.38213 1.09847 0.85333 0.79150 0.77912 0.78158 1.18769 1.20792 1.20272 1.46222 1.14950 1.54019 1.17844 1.18188 0.82638 0.79094 0.86526 1.90747 1.52403 1.61545 1.40337 1.21288 0.92915 0.99267 0.93166 1.22146 0.95811 0.94688 0.99111 1.22094 1.01297 0.96888 0.90045 1.19928 0.94776 0.97941 0.86258 1.84298 1.78215 1.22238 1.32047 1.19423 0.97493 0.81480 0.95807 1.21345 1.05363 0.97022 0.98949 1.21254 0.97712 0.93282 0.98717 1.21494 1.00577 1.01600 0.93287 1.21386 0.95871 0.92595 0.99996 1.20741 1.04638 0.95526 0.95866 1.23464 0.94635 0.93619 0.94672 1.67640 1.33951 1.15151 0.99861 0.93349 0.94937 0.94162 0.94333 0.90519 0.92472 0.75775 0.82246 0.80580 0.86906 0.84517 0.83301 0.82153 0.83561 0.79492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.46 2.24 44.25 0.10 14.56 16 4 H 0.01 0.38 7.58 -2.39 -0.02 0.36 16 5 C -0.55 -29.78 8.73 25.60 0.22 -29.55 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.18 11.29 21.45 0.24 -51.93 16 9 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 13 N -0.68 -30.46 5.01 -448.90 -2.25 -32.71 16 14 C 0.55 23.09 6.37 86.81 0.55 23.64 16 15 O -0.57 -26.86 13.45 -3.88 -0.05 -26.92 16 16 C 0.07 2.33 6.74 41.86 0.28 2.61 16 17 C -0.10 -2.55 9.62 22.59 0.22 -2.33 16 18 C -0.08 -1.60 10.03 22.53 0.23 -1.38 16 19 C 0.06 1.21 4.00 22.76 0.09 1.30 16 20 O -0.26 -5.21 9.99 -33.46 -0.33 -5.55 16 21 C 0.10 1.86 6.67 22.52 0.15 2.01 16 22 C -0.21 -3.97 9.20 22.37 0.21 -3.76 16 23 C -0.09 -1.42 10.04 22.25 0.22 -1.20 16 24 C -0.15 -1.80 10.04 22.28 0.22 -1.58 16 25 C -0.08 -0.88 10.04 22.26 0.22 -0.66 16 26 C -0.15 -2.15 9.99 22.37 0.22 -1.92 16 27 C 0.10 2.30 11.04 85.01 0.94 3.24 16 28 N -0.45 -13.62 9.52 -184.51 -1.76 -15.38 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.56 7.84 -2.39 -0.02 1.54 16 31 H 0.04 1.78 5.65 -2.39 -0.01 1.76 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 4.25 5.95 -2.39 -0.01 4.24 16 34 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.41 16.77 7.86 -92.71 -0.73 16.04 16 36 H 0.16 4.07 7.63 -2.91 -0.02 4.05 16 37 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.11 2.40 6.68 -2.91 -0.02 2.38 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 41 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -66.61 364.01 3.30 -63.31 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.31 Total: 29.04 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.11 Total: -4.54 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.76 Total: -100.02 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.39 Total: -32.47 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.61 3.30 -63.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558659394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.936 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds