Wall clock time and date at job start Tue Mar 31 2020 14:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.46910 * 2 1 4 4 C 1.38286 * 119.92677 * 90.00603 * 3 2 1 5 5 C 1.38115 * 120.06549 * 179.97438 * 4 3 2 6 6 C 1.38864 * 119.93391 * 359.97438 * 5 4 3 7 7 N 1.40089 * 120.07163 * 179.97438 * 6 5 4 8 8 N 1.28471 * 124.95748 * 324.98276 * 7 6 5 9 9 C 1.31966 * 110.09781 * 179.97438 * 8 7 6 10 10 C 1.47470 * 126.50722 * 179.97438 * 9 8 7 11 11 O 1.21535 * 120.00058 * 180.02562 * 10 9 8 12 12 O 1.34764 * 119.99987 * 0.02562 * 10 9 8 13 13 C 1.34862 * 116.99958 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00251 * 0.02562 * 13 12 10 15 15 C 1.38797 * 120.00144 * 179.97438 * 13 12 10 16 16 N 1.31424 * 120.00150 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00196 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47030 * 0.02562 * 17 15 13 19 19 H 1.48488 * 109.47205 * 120.00305 * 17 15 13 20 20 H 1.48502 * 109.47311 * 240.00629 * 17 15 13 21 21 C 1.41498 * 106.98393 * 359.97438 * 9 8 7 22 22 C 1.35246 * 105.77816 * 359.97438 * 21 9 8 23 23 C 1.51230 * 110.03601 * 179.97438 * 22 21 9 24 24 C 1.54490 * 105.13072 * 16.87054 * 23 22 21 25 25 C 1.50961 * 143.66139 * 180.02562 * 21 9 8 26 26 C 1.38865 * 119.85729 * 0.28005 * 6 5 4 27 27 C 1.38115 * 119.93300 * 359.46543 * 26 6 5 28 28 H 1.08991 * 109.47438 * 59.99738 * 1 2 3 29 29 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46471 * 299.99340 * 1 2 3 31 31 H 1.09004 * 109.46482 * 240.00251 * 2 1 3 32 32 H 1.08998 * 109.47013 * 120.00762 * 2 1 3 33 33 H 1.07991 * 119.97086 * 359.97354 * 4 3 2 34 34 H 1.08004 * 120.03349 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00569 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.32910 * 257.92767 * 23 22 21 37 37 H 1.09002 * 110.32610 * 135.81252 * 23 22 21 38 38 H 1.09005 * 110.92878 * 92.60140 * 24 23 22 39 39 H 1.08999 * 110.93022 * 216.23029 * 24 23 22 40 40 H 1.09006 * 110.33904 * 44.32698 * 25 21 9 41 41 H 1.08992 * 110.42867 * 282.12038 * 25 21 9 42 42 H 1.08003 * 120.03222 * 179.70533 * 26 6 5 43 43 H 1.07999 * 119.96229 * 180.28020 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0712 1.1985 5 6 2.7232 3.3732 1.2018 6 6 2.9561 4.0290 0.0001 7 7 3.4230 5.3497 0.0001 8 7 3.0980 6.2453 0.8620 9 6 3.7069 7.3830 0.5853 10 6 3.5919 8.6455 1.3388 11 8 4.2091 9.6278 0.9764 12 8 2.8025 8.7100 2.4291 13 6 2.7425 9.8938 3.0723 14 1 3.3118 10.7360 2.7077 15 6 1.9482 10.0301 4.2024 16 7 1.2550 9.0054 4.6459 17 14 1.8645 11.6700 5.0930 18 1 2.7308 12.6556 4.3977 19 1 0.4627 12.1599 5.0973 20 1 2.3331 11.4982 6.4916 21 6 4.4910 7.1614 -0.5715 22 6 4.2876 5.8683 -0.9115 23 6 5.0877 5.5258 -2.1483 24 6 6.1388 6.6511 -2.2731 25 6 5.4453 7.8200 -1.5382 26 6 2.7190 3.3748 -1.2016 27 6 2.2632 2.0710 -1.1984 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0816 1.5607 2.1327 34 1 2.9031 3.8806 2.1382 35 1 0.7002 9.1005 5.4358 36 1 4.4413 5.5124 -3.0258 37 1 5.5791 4.5605 -2.0260 38 1 7.0675 6.3736 -1.7742 39 1 6.3201 6.9004 -3.3185 40 1 6.1801 8.4169 -0.9978 41 1 4.8995 8.4428 -2.2468 42 1 2.8946 3.8837 -2.1379 43 1 2.0830 1.5603 -2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730854393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:25 Heat of formation + Delta-G solvation = 9.459243 kcal Electronic energy + Delta-G solvation = -26661.446388 eV Core-core repulsion = 22865.907757 eV Total energy + Delta-G solvation = -3795.538631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.18580 -40.95827 -40.42400 -37.95394 -37.29577 -35.76449 -34.40420 -33.25731 -32.20233 -29.99183 -29.74986 -28.72894 -27.72528 -25.86343 -24.22080 -23.81157 -22.62703 -22.08873 -21.09917 -20.91990 -19.92889 -18.77542 -18.31807 -17.72114 -16.98231 -16.66906 -16.56323 -16.35828 -16.22615 -15.61950 -15.31581 -14.80477 -14.68683 -14.54834 -14.38806 -14.26874 -13.79276 -13.77488 -13.67761 -13.56073 -13.25682 -12.91712 -12.82887 -12.48006 -12.41853 -12.24101 -12.08606 -12.06961 -12.03154 -11.94189 -11.73506 -11.68161 -11.38613 -10.87828 -10.77071 -10.11856 -9.78692 -9.32968 -8.61912 -6.41847 -0.32852 0.23757 0.47707 1.03184 1.18035 1.30338 1.38114 1.50921 2.05707 2.12947 2.51613 2.62453 2.93575 3.08513 3.47538 3.62510 3.77121 3.80018 3.83083 4.13061 4.18054 4.23289 4.26280 4.32740 4.48239 4.53084 4.55403 4.67812 4.77200 4.80953 4.85627 4.91070 4.91364 4.99489 5.06703 5.09154 5.10780 5.13258 5.19764 5.22137 5.34632 5.37067 5.42819 5.56022 5.70610 5.71895 6.01819 6.41879 6.75141 6.81349 7.65621 8.59462 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.003491 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.680475 B = 8019.512370 C =10351.004614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.070 4.070 4 C -0.103 4.103 5 C -0.122 4.122 6 C 0.089 3.911 7 N -0.217 5.217 8 N -0.273 5.273 9 C 0.010 3.990 10 C 0.473 3.527 11 O -0.563 6.563 12 O -0.229 6.229 13 C -0.425 4.425 14 H 0.088 0.912 15 C -0.006 4.006 16 N -0.899 5.899 17 Si 1.028 2.972 18 H -0.260 1.260 19 H -0.256 1.256 20 H -0.256 1.256 21 C -0.190 4.190 22 C -0.008 4.008 23 C -0.027 4.027 24 C -0.098 4.098 25 C -0.050 4.050 26 C -0.106 4.106 27 C -0.090 4.090 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.281 0.719 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.153 0.847 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -21.330 -16.848 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.071 4.071 4 C -0.121 4.121 5 C -0.141 4.141 6 C 0.000 4.000 7 N 0.001 4.999 8 N -0.107 5.107 9 C -0.147 4.147 10 C 0.320 3.680 11 O -0.460 6.460 12 O -0.136 6.136 13 C -0.500 4.500 14 H 0.106 0.894 15 C -0.207 4.207 16 N -0.536 5.536 17 Si 0.845 3.155 18 H -0.184 1.184 19 H -0.180 1.180 20 H -0.180 1.180 21 C -0.200 4.200 22 C -0.132 4.132 23 C -0.066 4.066 24 C -0.135 4.135 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.108 4.108 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.165 0.835 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.170 0.830 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.191 -21.684 -15.966 27.116 hybrid contribution 0.087 1.770 0.997 2.033 sum 3.278 -19.914 -14.969 25.127 Atomic orbital electron populations 1.21779 0.94423 1.02677 1.01851 1.20641 0.96185 0.90217 1.04782 1.20447 0.96423 0.97906 0.92284 1.21167 0.98448 0.92466 1.00047 1.21094 1.00672 0.96133 0.96246 1.18127 1.05014 0.79869 0.96988 1.42499 1.31185 1.08032 1.18148 1.74018 1.22607 0.98093 1.16001 1.20529 1.03924 0.91115 0.99096 1.20072 0.79913 0.86906 0.81086 1.90567 1.48092 1.37419 1.69888 1.84030 1.56523 1.37502 1.35516 1.21705 1.30803 0.87391 1.10134 0.89405 1.26811 0.93550 1.04411 0.95918 1.70135 1.26748 1.32912 1.23805 0.84450 0.79473 0.73882 0.77670 1.18365 1.18019 1.18007 1.21478 1.04323 0.97158 0.97003 1.23246 0.97604 0.93673 0.98639 1.20976 0.95209 1.01353 0.89016 1.22490 0.97036 0.91192 1.02798 1.20597 0.95134 0.98668 0.94388 1.21223 0.99645 0.96290 0.95407 1.21308 0.97412 0.92502 0.99591 0.92480 0.90687 0.93769 0.88376 0.89918 0.83480 0.87684 0.90940 0.86420 0.87698 0.89773 0.85736 0.91922 0.89693 0.82958 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.90 71.98 0.71 -0.83 16 2 C -0.08 -0.77 6.06 29.85 0.18 -0.59 16 3 C -0.07 -1.11 5.14 -19.84 -0.10 -1.21 16 4 C -0.10 -2.23 9.69 22.25 0.22 -2.01 16 5 C -0.12 -3.72 9.68 22.39 0.22 -3.50 16 6 C 0.09 2.72 6.32 38.12 0.24 2.96 16 7 N -0.22 -8.33 3.47 -175.10 -0.61 -8.94 16 8 N -0.27 -13.66 11.62 -48.28 -0.56 -14.22 16 9 C 0.01 0.50 7.16 42.36 0.30 0.81 16 10 C 0.47 29.33 7.90 70.26 0.56 29.88 16 11 O -0.56 -35.45 16.17 19.72 0.32 -35.13 16 12 O -0.23 -15.79 9.75 10.94 0.11 -15.68 16 13 C -0.42 -28.39 9.65 67.95 0.66 -27.73 16 14 H 0.09 5.84 6.86 -2.91 -0.02 5.82 16 15 C -0.01 -0.39 5.50 84.89 0.47 0.08 16 16 N -0.90 -57.57 13.67 21.63 0.30 -57.27 16 17 Si 1.03 46.13 29.55 68.60 2.03 48.16 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 C -0.19 -7.69 6.82 -19.67 -0.13 -7.83 16 22 C -0.01 -0.27 6.93 41.40 0.29 0.02 16 23 C -0.03 -0.47 6.11 30.52 0.19 -0.29 16 24 C -0.10 -1.65 7.13 31.62 0.23 -1.42 16 25 C -0.05 -1.47 6.78 30.45 0.21 -1.27 16 26 C -0.11 -2.16 9.44 22.39 0.21 -1.95 16 27 C -0.09 -1.30 9.69 22.25 0.22 -1.09 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.53 8.08 -2.38 -0.02 0.51 16 32 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.10 3.84 8.00 -2.91 -0.02 3.81 16 35 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.15 2.41 7.21 -2.91 -0.02 2.38 16 43 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -93.36 371.40 7.25 -86.11 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.03 Total: 12.94 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 4.64 Total: -15.97 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -0.87 Total: -80.42 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: 0.43 Total: -50.81 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -93.36 7.25 -86.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730854393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.570 kcal (2) G-P(sol) polarization free energy of solvation -93.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds