Wall clock time and date at job start Tue Mar 31 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46494 * 2 1 4 4 C 1.38635 * 120.46578 * 101.99117 * 3 2 1 5 5 C 1.38584 * 118.48820 * 180.02562 * 4 3 2 6 6 C 1.38603 * 119.34960 * 359.97438 * 5 4 3 7 7 N 1.31501 * 120.90423 * 359.97438 * 6 5 4 8 8 C 1.32751 * 121.63881 * 0.02562 * 7 6 5 9 9 C 1.48165 * 119.71885 * 179.97438 * 8 7 6 10 10 O 1.21509 * 119.99678 * 174.74877 * 9 8 7 11 11 N 1.34777 * 120.00235 * 354.74806 * 9 8 7 12 12 C 1.46497 * 119.99955 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46944 * 180.02562 * 12 11 9 14 14 C 1.38304 * 119.92646 * 269.72262 * 13 12 11 15 15 C 1.38097 * 120.06657 * 179.72748 * 14 13 12 16 16 C 1.38878 * 119.93139 * 0.56795 * 15 14 13 17 17 O 1.35748 * 120.07084 * 179.68380 * 16 15 14 18 18 C 1.34835 * 117.00025 * 185.59988 * 17 16 15 19 19 H 1.08002 * 120.00188 * 354.93506 * 18 17 16 20 20 C 1.38651 * 119.99935 * 174.93434 * 18 17 16 21 21 N 1.31554 * 120.00466 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46984 * 59.99834 * 22 20 18 24 24 H 1.48494 * 109.47409 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47079 * 300.00329 * 22 20 18 26 26 C 1.38887 * 119.86132 * 359.71025 * 16 15 14 27 27 C 1.38102 * 119.92853 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47227 * 299.99768 * 1 2 3 30 30 H 1.08993 * 109.47417 * 59.99920 * 1 2 3 31 31 H 1.08994 * 109.46932 * 240.00877 * 2 1 3 32 32 H 1.08993 * 109.47417 * 120.00080 * 2 1 3 33 33 H 1.07998 * 120.75651 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.32993 * 180.02562 * 5 4 3 35 35 H 1.08000 * 119.55013 * 180.28279 * 6 5 4 36 36 H 0.97006 * 119.99793 * 0.02562 * 11 9 8 37 37 H 1.09008 * 109.46777 * 299.99912 * 12 11 9 38 38 H 1.09002 * 109.47362 * 59.99978 * 12 11 9 39 39 H 1.07997 * 119.96350 * 359.97438 * 14 13 12 40 40 H 1.07997 * 120.03721 * 180.27346 * 15 14 13 41 41 H 0.97002 * 120.00971 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.03150 * 179.97438 * 26 16 15 43 43 H 1.07994 * 119.95947 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.5005 2.0009 1.1689 5 6 2.9522 3.3102 1.1222 6 6 2.9234 3.9963 -0.0818 7 7 2.4749 3.4215 -1.1761 8 6 2.0334 2.1695 -1.1743 9 6 1.5367 1.5640 -2.4321 10 8 1.2211 0.3909 -2.4583 11 7 1.4348 2.3143 -3.5470 12 6 0.9432 1.7157 -4.7904 13 6 0.9265 2.7589 -5.8779 14 6 -0.2049 3.5286 -6.0784 15 6 -0.2214 4.4892 -7.0704 16 6 0.8956 4.6739 -7.8747 17 8 0.8802 5.6130 -8.8548 18 6 1.9511 5.6618 -9.6727 19 1 2.8053 5.0289 -9.4823 20 6 1.9556 6.5244 -10.7582 21 7 0.9154 7.2957 -10.9900 22 14 3.4394 6.5925 -11.8909 23 1 3.6629 5.2544 -12.4951 24 1 3.1961 7.5873 -12.9662 25 1 4.6393 6.9903 -11.1115 26 6 2.0282 3.8955 -7.6746 27 6 2.0407 2.9409 -6.6766 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.5131 1.4450 2.0947 34 1 3.3237 3.7912 2.0150 35 1 3.2789 5.0153 -0.1228 36 1 1.6871 3.2508 -3.5261 37 1 1.5996 0.8963 -5.0835 38 1 -0.0665 1.3351 -4.6361 39 1 -1.0751 3.3809 -5.4560 40 1 -1.1036 5.0929 -7.2237 41 1 0.9183 7.8989 -11.7496 42 1 2.8982 4.0365 -8.2987 43 1 2.9210 2.3351 -6.5208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766554198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:14 Heat of formation + Delta-G solvation = -6.294483 kcal Electronic energy + Delta-G solvation = -25919.438325 eV Core-core repulsion = 22123.216561 eV Total energy + Delta-G solvation = -3796.221764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00893 -39.31661 -38.78123 -36.87926 -35.22733 -34.00726 -32.58539 -32.30401 -30.39583 -30.23307 -29.55351 -26.20779 -25.27488 -24.39574 -24.08695 -22.03695 -21.68480 -20.82865 -20.59041 -18.29856 -18.03700 -17.10124 -16.92429 -16.05054 -15.66483 -15.53267 -15.12879 -14.73743 -14.59090 -14.23985 -14.06480 -13.98424 -13.65738 -13.59212 -13.44513 -13.29184 -13.01252 -12.76833 -12.70839 -12.26109 -12.08519 -11.68090 -11.62157 -11.39249 -11.18235 -10.91150 -10.78046 -10.69650 -10.48783 -10.17489 -10.08857 -9.55927 -9.41361 -9.31119 -8.89433 -8.87361 -8.26031 -7.30810 -6.51206 -4.10150 0.41662 0.90959 2.08160 2.15662 2.65771 3.09583 3.10498 3.14090 3.27595 3.64194 3.91947 3.99032 4.42399 4.45499 4.53377 4.62485 4.70236 5.02251 5.03688 5.13524 5.18436 5.22758 5.27683 5.30086 5.42916 5.55139 5.67088 5.67975 5.76324 5.81474 5.84072 5.90001 6.09909 6.14295 6.19346 6.33659 6.36577 6.55810 6.62411 6.82552 6.97247 7.15625 7.29174 7.36858 7.39999 7.69836 7.74337 7.93403 8.20978 8.94006 9.62297 10.66263 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.002228 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.092589 B =12562.935606 C =13133.957532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.071 4.071 4 C -0.087 4.087 5 C -0.149 4.149 6 C 0.091 3.909 7 N -0.453 5.453 8 C 0.077 3.923 9 C 0.564 3.436 10 O -0.532 6.532 11 N -0.700 5.700 12 C 0.178 3.822 13 C -0.215 4.215 14 C -0.053 4.053 15 C -0.195 4.195 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.237 4.237 27 C -0.049 4.049 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.412 0.588 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.128 0.872 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -9.696 22.655 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.074 4.074 4 C -0.113 4.113 5 C -0.169 4.169 6 C -0.069 4.069 7 N -0.164 5.164 8 C -0.061 4.061 9 C 0.349 3.651 10 O -0.410 6.410 11 N -0.351 5.351 12 C 0.056 3.944 13 C -0.216 4.216 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.068 4.068 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.248 0.752 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.146 0.854 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.696 -9.716 21.519 23.764 hybrid contribution 1.034 0.263 0.310 1.111 sum 3.731 -9.453 21.829 24.079 Atomic orbital electron populations 1.21620 0.94153 1.01965 1.01525 1.20783 0.96951 0.90949 1.03966 1.20974 0.96011 0.97958 0.92500 1.21557 0.96625 0.95082 0.98011 1.22375 0.99380 0.95259 0.99850 1.22813 0.96145 1.00287 0.87663 1.67589 1.08019 1.09746 1.31029 1.21101 1.00163 0.90786 0.94094 1.17899 0.78498 0.85872 0.82837 1.90710 1.50178 1.15463 1.84668 1.46263 1.64475 1.15007 1.09320 1.20050 0.99366 0.94019 0.80980 1.19181 0.96419 1.03934 1.02095 1.20523 0.96653 0.94031 0.95999 1.20202 0.98026 1.03315 0.99890 1.19439 0.92981 0.87814 0.89138 1.83977 1.42173 1.45182 1.36242 1.21309 0.94545 1.24736 1.06369 0.88975 1.25311 0.98715 0.95470 0.96946 1.70023 1.28868 1.22149 1.28384 0.85768 0.79824 0.78616 0.79171 1.19420 1.20222 1.19437 1.21153 0.99954 1.01385 1.03103 1.20634 0.96370 0.96044 0.93756 0.92261 0.93759 0.91915 0.87407 0.91857 0.84287 0.84291 0.82017 0.75172 0.91335 0.91285 0.86977 0.86373 0.91839 0.85420 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.41 37.16 0.35 -0.98 16 2 C -0.09 -0.87 5.36 -27.88 -0.15 -1.02 16 3 C -0.07 -0.74 5.19 -104.09 -0.54 -1.28 16 4 C -0.09 -0.68 9.81 -39.31 -0.39 -1.06 16 5 C -0.15 -1.05 10.11 -39.32 -0.40 -1.44 16 6 C 0.09 0.80 11.18 -17.56 -0.20 0.61 16 7 N -0.45 -5.40 9.56 -9.80 -0.09 -5.49 16 8 C 0.08 0.95 6.74 -83.01 -0.56 0.40 16 9 C 0.56 7.85 7.38 -12.18 -0.09 7.76 16 10 O -0.53 -8.03 11.77 5.36 0.06 -7.97 16 11 N -0.70 -9.66 5.54 -62.32 -0.35 -10.01 16 12 C 0.18 2.53 5.80 -5.19 -0.03 2.50 16 13 C -0.21 -3.53 5.25 -104.57 -0.55 -4.08 16 14 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 15 C -0.20 -3.99 9.99 -39.40 -0.39 -4.38 16 16 C 0.16 3.78 6.65 -39.10 -0.26 3.52 16 17 O -0.17 -4.84 9.76 0.04 0.00 -4.84 16 18 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 22 Si 0.94 20.17 29.55 -169.99 -5.02 15.14 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.24 -4.98 9.17 -39.39 -0.36 -5.34 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 31 H 0.11 1.27 5.92 -51.93 -0.31 0.96 16 32 H 0.06 0.48 8.02 -51.93 -0.42 0.06 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.41 5.70 7.81 -40.82 -0.32 5.38 16 37 H 0.07 0.97 8.08 -51.92 -0.42 0.55 16 38 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -31.14 365.71 -8.57 -39.71 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.30 Total: 8.88 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -4.13 Total: -16.86 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.32 Total: -39.57 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.06 Total: -12.81 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.14 -8.57 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766554198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.414 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds