Wall clock time and date at job start Tue Mar 31 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46494 * 2 1 4 4 C 1.38635 * 120.46578 * 101.99117 * 3 2 1 5 5 C 1.38584 * 118.48820 * 180.02562 * 4 3 2 6 6 C 1.38603 * 119.34960 * 359.97438 * 5 4 3 7 7 N 1.31501 * 120.90423 * 359.97438 * 6 5 4 8 8 C 1.32751 * 121.63881 * 0.02562 * 7 6 5 9 9 C 1.48165 * 119.71885 * 179.97438 * 8 7 6 10 10 O 1.21509 * 119.99678 * 174.74877 * 9 8 7 11 11 N 1.34777 * 120.00235 * 354.74806 * 9 8 7 12 12 C 1.46497 * 119.99955 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46944 * 180.02562 * 12 11 9 14 14 C 1.38304 * 119.92646 * 269.72262 * 13 12 11 15 15 C 1.38097 * 120.06657 * 179.72748 * 14 13 12 16 16 C 1.38878 * 119.93139 * 0.56795 * 15 14 13 17 17 O 1.35748 * 120.07084 * 179.68380 * 16 15 14 18 18 C 1.34835 * 117.00025 * 185.59988 * 17 16 15 19 19 H 1.08002 * 120.00188 * 354.93506 * 18 17 16 20 20 C 1.38651 * 119.99935 * 174.93434 * 18 17 16 21 21 N 1.31554 * 120.00466 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46984 * 59.99834 * 22 20 18 24 24 H 1.48494 * 109.47409 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47079 * 300.00329 * 22 20 18 26 26 C 1.38887 * 119.86132 * 359.71025 * 16 15 14 27 27 C 1.38102 * 119.92853 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47227 * 299.99768 * 1 2 3 30 30 H 1.08993 * 109.47417 * 59.99920 * 1 2 3 31 31 H 1.08994 * 109.46932 * 240.00877 * 2 1 3 32 32 H 1.08993 * 109.47417 * 120.00080 * 2 1 3 33 33 H 1.07998 * 120.75651 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.32993 * 180.02562 * 5 4 3 35 35 H 1.08000 * 119.55013 * 180.28279 * 6 5 4 36 36 H 0.97006 * 119.99793 * 0.02562 * 11 9 8 37 37 H 1.09008 * 109.46777 * 299.99912 * 12 11 9 38 38 H 1.09002 * 109.47362 * 59.99978 * 12 11 9 39 39 H 1.07997 * 119.96350 * 359.97438 * 14 13 12 40 40 H 1.07997 * 120.03721 * 180.27346 * 15 14 13 41 41 H 0.97002 * 120.00971 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.03150 * 179.97438 * 26 16 15 43 43 H 1.07994 * 119.95947 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.5005 2.0009 1.1689 5 6 2.9522 3.3102 1.1222 6 6 2.9234 3.9963 -0.0818 7 7 2.4749 3.4215 -1.1761 8 6 2.0334 2.1695 -1.1743 9 6 1.5367 1.5640 -2.4321 10 8 1.2211 0.3909 -2.4583 11 7 1.4348 2.3143 -3.5470 12 6 0.9432 1.7157 -4.7904 13 6 0.9265 2.7589 -5.8779 14 6 -0.2049 3.5286 -6.0784 15 6 -0.2214 4.4892 -7.0704 16 6 0.8956 4.6739 -7.8747 17 8 0.8802 5.6130 -8.8548 18 6 1.9511 5.6618 -9.6727 19 1 2.8053 5.0289 -9.4823 20 6 1.9556 6.5244 -10.7582 21 7 0.9154 7.2957 -10.9900 22 14 3.4394 6.5925 -11.8909 23 1 3.6629 5.2544 -12.4951 24 1 3.1961 7.5873 -12.9662 25 1 4.6393 6.9903 -11.1115 26 6 2.0282 3.8955 -7.6746 27 6 2.0407 2.9409 -6.6766 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.5131 1.4450 2.0947 34 1 3.3237 3.7912 2.0150 35 1 3.2789 5.0153 -0.1228 36 1 1.6871 3.2508 -3.5261 37 1 1.5996 0.8963 -5.0835 38 1 -0.0665 1.3351 -4.6361 39 1 -1.0751 3.3809 -5.4560 40 1 -1.1036 5.0929 -7.2237 41 1 0.9183 7.8989 -11.7496 42 1 2.8982 4.0365 -8.2987 43 1 2.9210 2.3351 -6.5208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766554198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:14 Heat of formation + Delta-G solvation = -25.683274 kcal Electronic energy + Delta-G solvation = -25920.279086 eV Core-core repulsion = 22123.216561 eV Total energy + Delta-G solvation = -3797.062525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82542 -40.86874 -39.90408 -38.49715 -36.21167 -35.04455 -34.27276 -33.24956 -31.86340 -31.50124 -30.59266 -27.77816 -26.75205 -25.22862 -25.02009 -23.66555 -22.52076 -22.07846 -21.76088 -19.89326 -19.26569 -18.77670 -17.80447 -16.81998 -16.75082 -16.58977 -16.42161 -16.15590 -16.04335 -15.59213 -15.47129 -15.17113 -14.93050 -14.68517 -14.48960 -14.36129 -14.15215 -14.03633 -13.69475 -13.65062 -13.29061 -13.03558 -12.96662 -12.55912 -12.39431 -12.32748 -12.26877 -12.14395 -11.98263 -11.21905 -11.00347 -10.80679 -10.77042 -10.38542 -10.19101 -9.86577 -9.81529 -9.02510 -8.48616 -6.17098 -0.31851 0.26330 0.52479 0.56191 1.35305 1.45234 1.51336 1.75352 2.16863 2.19630 2.83067 2.87086 3.12683 3.25598 3.47488 3.71524 3.83875 3.86796 3.99408 4.00923 4.06234 4.15473 4.41610 4.43191 4.47618 4.54664 4.55055 4.57358 4.70879 4.78450 4.86976 5.01992 5.03943 5.11734 5.13108 5.13691 5.24662 5.27156 5.44652 5.50039 5.52876 5.67358 5.70425 5.73085 6.00508 6.13959 6.44714 6.83587 6.95837 7.16985 7.74634 8.73962 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.002228 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.092589 B =12562.935606 C =13133.957532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.080 4.080 4 C -0.085 4.085 5 C -0.131 4.131 6 C 0.078 3.922 7 N -0.481 5.481 8 C 0.046 3.954 9 C 0.562 3.438 10 O -0.549 6.549 11 N -0.702 5.702 12 C 0.184 3.816 13 C -0.184 4.184 14 C -0.044 4.044 15 C -0.204 4.204 16 C 0.123 3.877 17 O -0.228 6.228 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.021 4.021 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.243 4.243 27 C -0.046 4.046 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.412 0.588 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.122 0.878 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 -11.290 26.172 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.111 4.111 5 C -0.151 4.151 6 C -0.082 4.082 7 N -0.192 5.192 8 C -0.091 4.091 9 C 0.348 3.652 10 O -0.428 6.428 11 N -0.353 5.353 12 C 0.062 3.938 13 C -0.185 4.185 14 C -0.063 4.063 15 C -0.223 4.223 16 C 0.072 3.928 17 O -0.134 6.134 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.181 1.181 26 C -0.262 4.262 27 C -0.064 4.064 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.201 0.799 36 H 0.248 0.752 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.221 -11.359 25.088 27.862 hybrid contribution 0.508 0.554 -0.365 0.835 sum 4.729 -10.806 24.724 27.393 Atomic orbital electron populations 1.21574 0.94406 1.02120 1.00784 1.20732 0.96696 0.90929 1.04039 1.21142 0.96293 0.98038 0.92889 1.21970 0.95331 0.95600 0.98171 1.22805 0.97147 0.94754 1.00384 1.23351 0.95703 1.01397 0.87760 1.67514 1.09073 1.09797 1.32844 1.20919 1.02546 0.91689 0.93961 1.18218 0.77948 0.85654 0.83335 1.90703 1.50888 1.16145 1.85083 1.46131 1.64929 1.15003 1.09217 1.19977 1.00296 0.93110 0.80465 1.19501 0.95267 1.02583 1.01176 1.20872 0.98085 0.92402 0.94898 1.20436 0.97328 1.04213 1.00339 1.19979 0.94931 0.88533 0.89335 1.83948 1.43142 1.47977 1.38311 1.21799 0.95064 1.25301 1.06962 0.87962 1.26588 1.02098 0.94801 0.98424 1.70169 1.31689 1.24032 1.29743 0.84659 0.75765 0.79097 0.76785 1.18193 1.19639 1.18111 1.21240 0.99050 1.01926 1.04005 1.20931 0.97875 0.95132 0.92502 0.91674 0.92429 0.94594 0.89837 0.89207 0.81047 0.80425 0.79855 0.75195 0.90656 0.90358 0.83611 0.86572 0.91757 0.86075 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.41 71.98 0.68 -1.72 16 2 C -0.09 -1.54 5.36 29.85 0.16 -1.38 16 3 C -0.08 -1.50 5.19 -19.52 -0.10 -1.60 16 4 C -0.09 -1.00 9.81 22.45 0.22 -0.78 16 5 C -0.13 -1.30 10.11 22.44 0.23 -1.07 16 6 C 0.08 1.17 11.18 84.83 0.95 2.12 16 7 N -0.48 -10.75 9.56 -184.91 -1.77 -12.52 16 8 C 0.05 1.08 6.74 41.89 0.28 1.36 16 9 C 0.56 15.17 7.38 86.88 0.64 15.81 16 10 O -0.55 -16.24 11.77 -3.74 -0.04 -16.29 16 11 N -0.70 -18.38 5.54 -469.39 -2.60 -20.98 16 12 C 0.18 4.81 5.80 85.63 0.50 5.31 16 13 C -0.18 -5.68 5.25 -19.83 -0.10 -5.79 16 14 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16 15 C -0.20 -8.49 9.99 22.39 0.22 -8.27 16 16 C 0.12 6.04 6.65 22.58 0.15 6.19 16 17 O -0.23 -13.56 9.76 -22.76 -0.22 -13.78 16 18 C -0.42 -23.94 9.49 67.92 0.64 -23.29 16 19 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 20 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 21 N -0.92 -56.01 13.67 21.61 0.30 -55.72 16 22 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 C -0.24 -10.37 9.17 22.39 0.21 -10.16 16 27 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 0.84 6.44 -2.39 -0.02 0.82 16 31 H 0.08 1.91 5.92 -2.39 -0.01 1.90 16 32 H 0.09 1.08 8.02 -2.39 -0.02 1.06 16 33 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 35 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.41 10.89 7.81 -92.70 -0.72 10.16 16 37 H 0.08 1.93 8.08 -2.38 -0.02 1.91 16 38 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 39 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.12 5.25 5.64 -2.91 -0.02 5.24 16 43 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -73.76 365.71 3.59 -70.17 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.33 Total: 31.21 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 5.57 Total: -26.59 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -4.07 Total: -89.22 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.27 Total: -30.06 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.76 3.59 -70.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766554198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.489 kcal (2) G-P(sol) polarization free energy of solvation -73.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds