Wall clock time and date at job start Tue Mar 31 2020 14:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 O 1.42900 * 109.47052 * 239.99919 * 2 1 3 5 5 C 1.53001 * 109.47198 * 120.00305 * 2 1 3 6 6 C 1.52994 * 109.47307 * 59.99380 * 5 2 1 7 7 N 1.46501 * 109.47332 * 179.97438 * 6 5 2 8 8 C 1.34773 * 120.00110 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00361 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99901 * 180.27787 * 8 7 6 11 11 C 1.40138 * 120.00081 * 175.35645 * 10 8 7 12 12 C 1.38688 * 120.07459 * 34.59721 * 11 10 8 13 13 C 1.38200 * 120.02195 * 179.72486 * 12 11 10 14 14 C 1.38549 * 120.17243 * 0.55031 * 13 12 11 15 15 F 1.35101 * 119.92670 * 179.74446 * 14 13 12 16 16 C 1.38350 * 120.14875 * 359.72481 * 14 13 12 17 17 C 1.38734 * 119.97931 * 0.02562 * 16 14 13 18 18 O 1.35777 * 120.08833 * 180.02562 * 17 16 14 19 19 C 1.34803 * 116.99839 * 5.43667 * 18 17 16 20 20 H 1.08003 * 120.00175 * 354.94414 * 19 18 17 21 21 C 1.38635 * 120.00104 * 174.95430 * 19 18 17 22 22 N 1.31578 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47015 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46901 * 119.99536 * 23 21 19 26 26 H 1.48498 * 109.47335 * 239.99890 * 23 21 19 27 27 H 1.09001 * 109.47202 * 300.00334 * 1 2 3 28 28 H 1.09002 * 109.47091 * 59.99537 * 1 2 3 29 29 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47305 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47495 * 299.99661 * 3 2 1 32 32 H 1.08993 * 109.47486 * 60.00024 * 3 2 1 33 33 H 0.96698 * 114.00620 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46522 * 299.99777 * 5 2 1 35 35 H 1.09002 * 109.47463 * 179.97438 * 5 2 1 36 36 H 1.09007 * 109.47267 * 60.00333 * 6 5 2 37 37 H 1.09001 * 109.47776 * 300.00350 * 6 5 2 38 38 H 0.97005 * 119.99663 * 0.02562 * 7 6 5 39 39 H 0.96998 * 120.00000 * 355.35605 * 10 8 7 40 40 H 1.08002 * 119.98910 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.91679 * 180.24909 * 13 12 11 42 42 H 1.07999 * 120.00662 * 180.02562 * 16 14 13 43 43 H 0.96996 * 120.00069 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1637 1.2493 7 7 2.0188 -2.8546 2.4451 8 6 1.6928 -4.1447 2.6586 9 8 0.9933 -4.7355 1.8585 10 7 2.1379 -4.7786 3.7616 11 6 1.7204 -6.0885 4.0335 12 6 1.4967 -6.9769 2.9924 13 6 1.0905 -8.2700 3.2621 14 6 0.8945 -8.6797 4.5710 15 9 0.4924 -9.9434 4.8287 16 6 1.1101 -7.7976 5.6148 17 6 1.5229 -6.4996 5.3515 18 8 1.7357 -5.6322 6.3742 19 6 1.6375 -6.1251 7.6251 20 1 1.3194 -7.1455 7.7800 21 6 1.9445 -5.3220 8.7126 22 7 2.3323 -4.0790 8.5239 23 14 1.8078 -6.0047 10.4460 24 1 1.3537 -7.4174 10.3872 25 1 3.1343 -5.9379 11.1103 26 1 0.8263 -5.2015 11.2184 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.9703 -0.7122 -1.2328 34 1 1.6767 -0.2074 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8932 -2.6777 0.3592 37 1 0.4399 -2.1638 1.2493 38 1 2.5765 -2.3832 3.0836 39 1 2.7473 -4.3283 4.3671 40 1 1.6439 -6.6593 1.9706 41 1 0.9207 -8.9617 2.4502 42 1 0.9570 -8.1195 6.6343 43 1 2.5475 -3.5172 9.2848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775671258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:28 Heat of formation + Delta-G solvation = -132.980693 kcal Electronic energy + Delta-G solvation = -27325.843205 eV Core-core repulsion = 23093.358690 eV Total energy + Delta-G solvation = -4232.484515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.22391 -40.23584 -39.08982 -38.52179 -36.43005 -34.87502 -33.99649 -32.82516 -32.40301 -29.74413 -29.25932 -27.83973 -27.64916 -25.49788 -23.67594 -22.29470 -21.56837 -20.73443 -20.30696 -18.35908 -18.24499 -17.66359 -16.79130 -16.53353 -15.92822 -15.59032 -15.35599 -15.22072 -14.99191 -14.89716 -14.30706 -14.27548 -14.04730 -13.83247 -13.56142 -13.46460 -13.20357 -12.99129 -12.53378 -12.45148 -12.31426 -12.14017 -12.07262 -11.77194 -11.65450 -11.50475 -11.32075 -10.96930 -10.89259 -10.71747 -10.52534 -10.28179 -9.83653 -9.74174 -9.42057 -8.96686 -8.91724 -7.84893 -7.07870 -6.60689 -4.18224 1.88209 2.14969 2.91364 3.05213 3.07827 3.13036 3.50452 3.84933 3.91858 4.36765 4.38307 4.44334 4.57535 4.73360 4.88223 4.95888 4.97172 5.05864 5.14253 5.29849 5.36413 5.46205 5.59965 5.60960 5.64069 5.75793 5.77310 5.81294 5.95838 6.05894 6.08060 6.23868 6.54788 6.65332 6.72438 6.93393 6.96190 7.09955 7.17481 7.33089 7.39279 7.69122 7.84149 8.29720 8.85189 8.89598 9.47969 10.56576 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003038 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.951215 B = 9213.070685 C =11344.667338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.132 3.868 3 C -0.178 4.178 4 O -0.558 6.558 5 C -0.159 4.159 6 C 0.143 3.857 7 N -0.748 5.748 8 C 0.703 3.297 9 O -0.585 6.585 10 N -0.665 5.665 11 C 0.078 3.922 12 C -0.050 4.050 13 C -0.228 4.228 14 C 0.127 3.873 15 F -0.152 7.152 16 C -0.258 4.258 17 C 0.157 3.843 18 O -0.169 6.169 19 C -0.391 4.391 20 H 0.095 0.905 21 C 0.042 3.958 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.375 0.625 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.410 0.590 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 8.569 -12.085 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.091 3.909 3 C -0.235 4.235 4 O -0.364 6.364 5 C -0.198 4.198 6 C 0.018 3.982 7 N -0.405 5.405 8 C 0.404 3.596 9 O -0.463 6.463 10 N -0.312 5.312 11 C -0.017 4.017 12 C -0.071 4.071 13 C -0.248 4.248 14 C 0.107 3.893 15 F -0.131 7.131 16 C -0.279 4.279 17 C 0.101 3.899 18 O -0.072 6.072 19 C -0.467 4.467 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.495 5.495 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.201 1.201 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.223 0.777 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.246 0.754 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.962 8.435 -12.764 15.330 hybrid contribution 0.991 0.003 1.844 2.093 sum 1.953 8.438 -10.921 13.938 Atomic orbital electron populations 1.21855 0.92455 1.03530 1.02473 1.21110 0.95224 0.90445 0.84170 1.22488 1.01468 0.96581 1.02984 1.86593 1.26645 1.79430 1.43706 1.22518 1.01662 0.96035 0.99543 1.21140 0.99407 0.90511 0.87095 1.45100 1.57424 1.10962 1.26972 1.15883 0.80170 0.81302 0.82236 1.90876 1.42623 1.66063 1.46764 1.42193 1.49592 1.13938 1.25490 1.16655 1.10184 0.84453 0.90365 1.20686 0.97087 0.90617 0.98722 1.20495 1.12412 0.97520 0.94357 1.17460 0.99303 0.78791 0.93713 1.91409 1.88425 1.38084 1.95148 1.20842 1.13395 0.93994 0.99662 1.18824 0.94058 0.89155 0.87890 1.83932 1.76757 1.33205 1.13331 1.21404 1.47091 0.99236 0.78996 0.88793 1.25273 0.95977 0.95347 0.99627 1.70020 1.41435 1.06137 1.31956 0.85620 0.78383 0.79118 0.80224 1.18953 1.20044 1.20074 0.91007 0.91872 0.91112 0.92274 0.91662 0.91405 0.77734 0.90109 0.90912 0.91055 0.91397 0.76963 0.75387 0.83933 0.85948 0.83982 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.49 37.16 0.32 -0.91 16 2 C 0.13 1.03 1.09 -90.62 -0.10 0.93 16 3 C -0.18 -1.10 8.81 37.15 0.33 -0.77 16 4 O -0.56 -4.90 12.31 -35.23 -0.43 -5.34 16 5 C -0.16 -1.28 4.57 -26.73 -0.12 -1.40 16 6 C 0.14 1.65 5.18 -4.04 -0.02 1.63 16 7 N -0.75 -9.94 5.56 -65.22 -0.36 -10.31 16 8 C 0.70 12.50 8.41 -86.92 -0.73 11.77 16 9 O -0.59 -12.07 13.76 5.29 0.07 -12.00 16 10 N -0.67 -12.43 5.20 -14.07 -0.07 -12.50 16 11 C 0.08 1.65 6.33 -83.44 -0.53 1.13 16 12 C -0.05 -1.00 8.70 -39.43 -0.34 -1.34 16 13 C -0.23 -4.32 10.02 -39.48 -0.40 -4.71 16 14 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 15 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 16 C -0.26 -5.69 9.14 -39.36 -0.36 -6.05 16 17 C 0.16 3.65 6.66 -38.94 -0.26 3.39 16 18 O -0.17 -4.42 9.32 0.04 0.00 -4.42 16 19 C -0.39 -10.31 9.49 30.88 0.29 -10.02 16 20 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -23.33 13.67 55.48 0.76 -22.57 16 23 Si 0.94 19.66 29.55 -169.99 -5.02 14.63 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 30 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.38 2.00 9.05 45.56 0.41 2.42 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 37 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 38 H 0.40 4.37 8.49 -40.82 -0.35 4.02 16 39 H 0.41 7.23 8.59 -40.82 -0.35 6.88 16 40 H 0.14 2.76 6.19 -52.49 -0.32 2.43 16 41 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 42 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 43 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -31.51 364.67 -6.59 -38.10 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -4.76 Total: 14.88 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.31 Total: -3.07 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.32 Total: -45.37 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.36 Total: -21.76 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.51 -6.59 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775671258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.878 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds