Wall clock time and date at job start Tue Mar 31 2020 14:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 O 1.42900 * 109.47052 * 239.99919 * 2 1 3 5 5 C 1.53001 * 109.47198 * 120.00305 * 2 1 3 6 6 C 1.52994 * 109.47307 * 59.99380 * 5 2 1 7 7 N 1.46501 * 109.47332 * 179.97438 * 6 5 2 8 8 C 1.34773 * 120.00110 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00361 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99901 * 180.27787 * 8 7 6 11 11 C 1.40138 * 120.00081 * 175.35645 * 10 8 7 12 12 C 1.38688 * 120.07459 * 34.59721 * 11 10 8 13 13 C 1.38200 * 120.02195 * 179.72486 * 12 11 10 14 14 C 1.38549 * 120.17243 * 0.55031 * 13 12 11 15 15 F 1.35101 * 119.92670 * 179.74446 * 14 13 12 16 16 C 1.38350 * 120.14875 * 359.72481 * 14 13 12 17 17 C 1.38734 * 119.97931 * 0.02562 * 16 14 13 18 18 O 1.35777 * 120.08833 * 180.02562 * 17 16 14 19 19 C 1.34803 * 116.99839 * 5.43667 * 18 17 16 20 20 H 1.08003 * 120.00175 * 354.94414 * 19 18 17 21 21 C 1.38635 * 120.00104 * 174.95430 * 19 18 17 22 22 N 1.31578 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47015 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46901 * 119.99536 * 23 21 19 26 26 H 1.48498 * 109.47335 * 239.99890 * 23 21 19 27 27 H 1.09001 * 109.47202 * 300.00334 * 1 2 3 28 28 H 1.09002 * 109.47091 * 59.99537 * 1 2 3 29 29 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47305 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47495 * 299.99661 * 3 2 1 32 32 H 1.08993 * 109.47486 * 60.00024 * 3 2 1 33 33 H 0.96698 * 114.00620 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46522 * 299.99777 * 5 2 1 35 35 H 1.09002 * 109.47463 * 179.97438 * 5 2 1 36 36 H 1.09007 * 109.47267 * 60.00333 * 6 5 2 37 37 H 1.09001 * 109.47776 * 300.00350 * 6 5 2 38 38 H 0.97005 * 119.99663 * 0.02562 * 7 6 5 39 39 H 0.96998 * 120.00000 * 355.35605 * 10 8 7 40 40 H 1.08002 * 119.98910 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.91679 * 180.24909 * 13 12 11 42 42 H 1.07999 * 120.00662 * 180.02562 * 16 14 13 43 43 H 0.96996 * 120.00069 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1637 1.2493 7 7 2.0188 -2.8546 2.4451 8 6 1.6928 -4.1447 2.6586 9 8 0.9933 -4.7355 1.8585 10 7 2.1379 -4.7786 3.7616 11 6 1.7204 -6.0885 4.0335 12 6 1.4967 -6.9769 2.9924 13 6 1.0905 -8.2700 3.2621 14 6 0.8945 -8.6797 4.5710 15 9 0.4924 -9.9434 4.8287 16 6 1.1101 -7.7976 5.6148 17 6 1.5229 -6.4996 5.3515 18 8 1.7357 -5.6322 6.3742 19 6 1.6375 -6.1251 7.6251 20 1 1.3194 -7.1455 7.7800 21 6 1.9445 -5.3220 8.7126 22 7 2.3323 -4.0790 8.5239 23 14 1.8078 -6.0047 10.4460 24 1 1.3537 -7.4174 10.3872 25 1 3.1343 -5.9379 11.1103 26 1 0.8263 -5.2015 11.2184 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.9703 -0.7122 -1.2328 34 1 1.6767 -0.2074 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8932 -2.6777 0.3592 37 1 0.4399 -2.1638 1.2493 38 1 2.5765 -2.3832 3.0836 39 1 2.7473 -4.3283 4.3671 40 1 1.6439 -6.6593 1.9706 41 1 0.9207 -8.9617 2.4502 42 1 0.9570 -8.1195 6.6343 43 1 2.5475 -3.5172 9.2848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775671258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:28 Heat of formation + Delta-G solvation = -155.944898 kcal Electronic energy + Delta-G solvation = -27326.839008 eV Core-core repulsion = 23093.358690 eV Total energy + Delta-G solvation = -4233.480317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.82269 -41.74026 -40.47260 -39.49134 -38.10192 -36.01674 -35.54937 -34.30173 -33.58130 -31.15839 -30.63244 -29.18904 -28.27108 -27.37825 -24.76695 -23.84146 -23.10598 -21.97876 -21.16913 -20.14503 -19.72141 -19.23940 -18.32663 -17.30551 -17.16917 -16.97232 -16.65655 -16.59172 -16.56993 -16.03810 -15.93211 -15.56890 -15.34469 -15.27434 -15.05046 -14.80284 -14.69927 -14.03602 -13.76437 -13.69863 -13.42047 -13.17597 -13.07422 -12.96885 -12.70201 -12.59890 -12.45011 -12.35431 -12.23158 -12.12698 -11.65305 -11.55971 -11.36105 -11.05016 -10.83609 -10.81723 -10.12909 -9.54007 -8.74232 -8.50719 -6.16570 0.21754 0.46934 1.37933 1.43299 1.53618 1.59888 2.05053 2.14692 2.68769 3.05947 3.13152 3.18913 3.38165 3.45986 3.78397 3.89384 3.95443 4.02132 4.16994 4.25187 4.36080 4.38349 4.57756 4.65135 4.75776 4.87755 4.92116 4.94750 5.01125 5.02525 5.04192 5.15690 5.22949 5.30955 5.31295 5.34478 5.38914 5.47432 5.58044 5.91845 5.95113 6.08612 6.92934 6.93976 6.95546 7.46483 7.63722 8.69863 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003038 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.951215 B = 9213.070685 C =11344.667338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 C -0.172 4.172 4 O -0.577 6.577 5 C -0.149 4.149 6 C 0.143 3.857 7 N -0.730 5.730 8 C 0.700 3.300 9 O -0.615 6.615 10 N -0.666 5.666 11 C 0.079 3.921 12 C -0.052 4.052 13 C -0.204 4.204 14 C 0.122 3.878 15 F -0.145 7.145 16 C -0.263 4.263 17 C 0.131 3.869 18 O -0.201 6.201 19 C -0.416 4.416 20 H 0.099 0.901 21 C -0.008 4.008 22 N -0.904 5.904 23 Si 1.011 2.989 24 H -0.258 1.258 25 H -0.267 1.267 26 H -0.270 1.270 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.389 0.611 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.410 0.590 39 H 0.414 0.586 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.137 0.863 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 8.652 -12.601 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.091 3.909 3 C -0.230 4.230 4 O -0.386 6.386 5 C -0.187 4.187 6 C 0.020 3.980 7 N -0.386 5.386 8 C 0.401 3.599 9 O -0.495 6.495 10 N -0.313 5.313 11 C -0.017 4.017 12 C -0.073 4.073 13 C -0.223 4.223 14 C 0.102 3.898 15 F -0.123 7.123 16 C -0.284 4.284 17 C 0.077 3.923 18 O -0.107 6.107 19 C -0.492 4.492 20 H 0.116 0.884 21 C -0.208 4.208 22 N -0.541 5.541 23 Si 0.831 3.169 24 H -0.181 1.181 25 H -0.192 1.192 26 H -0.195 1.195 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.239 0.761 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.246 0.754 39 H 0.250 0.750 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.154 0.846 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.400 8.536 -13.317 15.880 hybrid contribution 0.832 -0.093 1.750 1.940 sum 2.232 8.444 -11.567 14.494 Atomic orbital electron populations 1.21905 0.93348 1.02398 1.03092 1.21131 0.94674 0.91426 0.83661 1.22427 1.02256 0.95040 1.03244 1.86564 1.28162 1.79723 1.44109 1.22477 1.02755 0.93314 1.00133 1.21237 0.98578 0.92458 0.85761 1.45053 1.56565 1.09412 1.27582 1.16049 0.79937 0.82407 0.81534 1.90843 1.43977 1.67098 1.47624 1.42202 1.49733 1.13457 1.25904 1.16903 1.09158 0.85684 0.89956 1.20864 0.96961 0.90750 0.98686 1.20876 1.09268 0.97518 0.94677 1.17448 0.99678 0.78897 0.93781 1.91427 1.88320 1.37424 1.95153 1.20919 1.13282 0.94118 1.00101 1.19154 0.95167 0.89695 0.88261 1.83909 1.78805 1.34266 1.13673 1.21786 1.47910 0.99787 0.79672 0.88411 1.26355 0.95354 0.95595 1.03468 1.70119 1.43188 1.07484 1.33294 0.84620 0.78683 0.78692 0.74873 1.18139 1.19163 1.19479 0.89932 0.91799 0.93073 0.91004 0.91838 0.90725 0.76101 0.89270 0.88994 0.92040 0.92951 0.75390 0.74988 0.83080 0.82506 0.84589 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.49 71.98 0.61 -1.82 16 2 C 0.13 1.86 1.09 -10.80 -0.01 1.84 16 3 C -0.17 -1.73 8.81 71.98 0.63 -1.09 16 4 O -0.58 -9.43 12.31 -148.98 -1.83 -11.26 16 5 C -0.15 -2.10 4.57 30.59 0.14 -1.96 16 6 C 0.14 3.21 5.18 86.38 0.45 3.66 16 7 N -0.73 -18.83 5.56 -478.53 -2.66 -21.49 16 8 C 0.70 24.67 8.41 179.05 1.51 26.18 16 9 O -0.61 -25.19 13.76 -4.00 -0.05 -25.24 16 10 N -0.67 -24.98 5.20 -316.70 -1.65 -26.62 16 11 C 0.08 3.32 6.33 38.22 0.24 3.56 16 12 C -0.05 -1.98 8.70 22.37 0.19 -1.79 16 13 C -0.20 -7.24 10.02 22.33 0.22 -7.01 16 14 C 0.12 4.77 7.29 22.37 0.16 4.94 16 15 F -0.14 -5.33 17.26 44.97 0.78 -4.56 16 16 C -0.26 -11.67 9.14 22.42 0.20 -11.46 16 17 C 0.13 6.20 6.66 22.68 0.15 6.35 16 18 O -0.20 -10.87 9.32 -22.76 -0.21 -11.08 16 19 C -0.42 -22.49 9.49 67.91 0.64 -21.85 16 20 H 0.10 5.00 5.20 -2.91 -0.02 4.99 16 21 C -0.01 -0.42 5.49 84.83 0.47 0.04 16 22 N -0.90 -50.11 13.67 21.61 0.30 -49.81 16 23 Si 1.01 40.44 29.55 68.60 2.03 42.47 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 26 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.01 6.43 -2.39 -0.02 1.00 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.39 3.50 9.05 -74.06 -0.67 2.83 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.53 7.68 -2.38 -0.02 1.51 16 37 H 0.05 1.36 6.43 -2.39 -0.02 1.35 16 38 H 0.41 8.51 8.49 -92.70 -0.79 7.73 16 39 H 0.41 14.82 8.59 -92.71 -0.80 14.02 16 40 H 0.15 5.60 6.19 -2.91 -0.02 5.58 16 41 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.14 6.10 5.64 -2.91 -0.02 6.08 16 43 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -68.72 364.67 1.15 -67.58 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -1.16 Total: 40.43 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.62 Total: -0.41 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.01 Total: -97.93 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.10 Total: -47.59 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -68.72 1.15 -67.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775671258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.369 kcal (2) G-P(sol) polarization free energy of solvation -68.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds