Wall clock time and date at job start Tue Mar 31 2020 15:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42906 * 109.46849 * 2 1 4 4 C 1.53003 * 109.46963 * 240.00494 * 2 1 3 5 5 C 1.50699 * 109.47435 * 59.99538 * 4 2 1 6 6 O 1.21277 * 119.99979 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99595 * 179.97438 * 5 4 2 8 8 C 1.39478 * 119.99413 * 174.97665 * 7 5 4 9 9 C 1.38602 * 119.57527 * 185.36720 * 8 7 5 10 10 C 1.40807 * 118.78975 * 180.02562 * 9 8 7 11 11 C 1.41552 * 120.99412 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99437 * 151.69618 * 11 10 9 13 13 C 1.40034 * 119.99769 * 331.70071 * 11 10 9 14 14 N 1.30740 * 119.99926 * 350.17632 * 13 11 10 15 15 Si 1.86794 * 119.99802 * 170.17853 * 13 11 10 16 16 H 1.48499 * 109.47426 * 89.99840 * 15 13 11 17 17 H 1.48503 * 109.47025 * 210.00034 * 15 13 11 18 18 H 1.48505 * 109.47002 * 329.99566 * 15 13 11 19 19 C 1.41170 * 118.01149 * 0.02562 * 10 9 8 20 20 C 1.37591 * 119.01676 * 359.97438 * 19 10 9 21 21 N 1.32084 * 121.10743 * 359.72212 * 20 19 10 22 22 C 1.50699 * 109.47422 * 120.00025 * 2 1 3 23 23 C 1.38236 * 120.00128 * 270.00448 * 22 2 1 24 24 C 1.38227 * 120.00286 * 180.02562 * 23 22 2 25 25 C 1.38239 * 119.99705 * 359.94757 * 24 23 22 26 26 C 1.38230 * 120.00229 * 0.28338 * 25 24 23 27 27 C 1.38234 * 120.00011 * 359.52900 * 26 25 24 28 28 H 1.09004 * 109.46684 * 299.99711 * 1 2 3 29 29 H 1.08992 * 109.47124 * 59.99927 * 1 2 3 30 30 H 1.09000 * 109.46512 * 180.02562 * 1 2 3 31 31 H 0.96701 * 113.99682 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46879 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.46633 * 299.99365 * 4 2 1 34 34 H 0.96993 * 120.00684 * 354.98344 * 7 5 4 35 35 H 1.07997 * 120.60080 * 0.03082 * 9 8 7 36 36 H 0.96996 * 119.99873 * 180.02562 * 14 13 11 37 37 H 1.08004 * 120.49442 * 179.97438 * 19 10 9 38 38 H 1.07995 * 119.44739 * 180.02562 * 20 19 10 39 39 H 1.08000 * 119.99507 * 359.97438 * 23 22 2 40 40 H 1.07995 * 120.00143 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.99875 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.00242 * 179.72448 * 26 25 24 43 43 H 1.07998 * 120.00479 * 180.21070 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 8 0.8407 0.9755 -2.3685 7 7 1.8637 -0.4710 -3.7038 8 6 1.3148 0.1220 -4.8407 9 6 1.5669 -0.4270 -6.0881 10 6 1.0049 0.1853 -7.2247 11 6 1.2324 -0.3358 -8.5210 12 1 0.4965 -0.1909 -9.2980 13 6 2.4117 -1.0393 -8.7957 14 7 3.3840 -1.0519 -7.9218 15 14 2.5955 -1.9594 -10.4109 16 1 3.1901 -1.0574 -11.4297 17 1 3.4813 -3.1347 -10.2129 18 1 1.2610 -2.4178 -10.8740 19 6 0.2087 1.3352 -7.0329 20 6 0.0148 1.8071 -5.7551 21 7 0.5551 1.1998 -4.7140 22 6 2.0325 -0.7104 1.2304 23 6 2.2628 0.0005 2.3934 24 6 2.7242 -0.6510 3.5218 25 6 2.9541 -2.0137 3.4877 26 6 2.7284 -2.7238 2.3234 27 6 2.2633 -2.0729 1.1960 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 2.9704 1.4237 -0.0004 32 1 3.1301 -0.7216 -1.2491 33 1 1.6767 -1.7489 -1.2493 34 1 2.4799 -1.2145 -3.7942 35 1 2.1831 -1.3085 -6.1864 36 1 4.2009 -1.5389 -8.1122 37 1 -0.2416 1.8370 -7.8766 38 1 -0.5935 2.6860 -5.6003 39 1 2.0831 1.0651 2.4200 40 1 2.9045 -0.0955 4.4303 41 1 3.3142 -2.5228 4.3695 42 1 2.9123 -3.7877 2.2955 43 1 2.0837 -2.6283 0.2874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780982786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:18 Heat of formation + Delta-G solvation = -19.687545 kcal Electronic energy + Delta-G solvation = -26691.116149 eV Core-core repulsion = 22894.313618 eV Total energy + Delta-G solvation = -3796.802531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39852 -39.29365 -37.98202 -36.70000 -34.27764 -33.68572 -32.84883 -31.07974 -30.56980 -29.98640 -28.95582 -27.42351 -25.97714 -23.60866 -22.76908 -21.99471 -21.64140 -20.28985 -19.53410 -17.98559 -17.66192 -16.64363 -16.25322 -15.83222 -15.44658 -15.18236 -14.99566 -14.75862 -14.38034 -14.20686 -14.04908 -13.72728 -13.58333 -13.24296 -12.91281 -12.70689 -12.59254 -12.46069 -12.20020 -12.01841 -11.70696 -11.55015 -11.41480 -11.22058 -11.18015 -10.90920 -10.82387 -10.28294 -10.14423 -10.07513 -9.67654 -9.37652 -9.16544 -9.11151 -8.94302 -7.95772 -7.70525 -7.02752 -6.75825 -4.62851 1.11844 1.20229 2.56713 2.78818 3.00760 3.05343 3.19427 3.47778 3.54869 3.60935 3.85436 4.25408 4.49752 4.63594 4.68997 4.79665 4.83971 4.92197 5.04656 5.20627 5.29611 5.39128 5.51183 5.65688 5.70694 5.74110 5.83127 5.93182 5.99170 6.08060 6.26122 6.30923 6.39555 6.53037 6.62103 6.67556 6.79273 6.80127 6.95844 7.11443 7.38545 7.47668 7.72835 7.78969 7.95293 8.22818 8.43571 8.70537 8.75435 8.94002 9.68469 10.10494 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.002602 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.503455 B =10758.529811 C =11753.636531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.195 3.805 3 O -0.533 6.533 4 C -0.171 4.171 5 C 0.497 3.503 6 O -0.457 6.457 7 N -0.662 5.662 8 C 0.336 3.664 9 C -0.238 4.238 10 C 0.143 3.857 11 C -0.457 4.457 12 H 0.081 0.919 13 C 0.076 3.924 14 N -0.797 5.797 15 Si 0.914 3.086 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.281 4.281 20 C 0.117 3.883 21 N -0.550 5.550 22 C -0.112 4.112 23 C -0.102 4.102 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.114 4.114 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.369 0.631 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.406 0.594 35 H 0.129 0.871 36 H 0.280 0.720 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -5.474 17.063 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.154 3.846 3 O -0.337 6.337 4 C -0.211 4.211 5 C 0.281 3.719 6 O -0.325 6.325 7 N -0.309 5.309 8 C 0.111 3.889 9 C -0.263 4.263 10 C 0.135 3.865 11 C -0.489 4.489 12 H 0.099 0.901 13 C -0.142 4.142 14 N -0.424 5.424 15 Si 0.738 3.262 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.305 4.305 20 C -0.038 4.038 21 N -0.269 5.269 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.132 4.132 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.215 0.785 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.240 0.760 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.479 -4.378 18.115 18.695 hybrid contribution 1.506 -1.482 -1.629 2.668 sum 2.985 -5.861 16.485 17.749 Atomic orbital electron populations 1.22002 0.91245 1.02064 1.05100 1.19605 0.95508 0.81546 0.87988 1.86727 1.25814 1.24556 1.96579 1.22539 1.02768 1.01473 0.94344 1.20350 0.82197 0.85557 0.83839 1.90758 1.33794 1.22849 1.85129 1.43506 1.46921 1.35741 1.04683 1.18222 0.94012 0.91866 0.84752 1.21600 1.10541 1.04512 0.89691 1.17590 0.87569 0.88405 0.92969 1.19553 1.03238 1.29997 0.96101 0.90099 1.25927 0.95049 0.94462 0.98757 1.69746 1.04338 1.33130 1.35156 0.86225 0.79323 0.79234 0.81435 1.19413 1.20100 1.18458 1.21948 1.10758 1.00885 0.96903 1.21782 0.96493 0.97261 0.88229 1.67237 1.15251 1.10738 1.33646 1.20661 0.99706 0.94434 0.96409 1.21052 0.98278 1.00604 0.92070 1.21169 0.99804 0.94713 0.98343 1.21174 1.00397 0.94509 0.98057 1.21148 0.99765 0.99893 0.93144 1.21159 0.99292 0.94004 0.98763 0.92355 0.88096 0.92077 0.78480 0.88901 0.88274 0.75971 0.85365 0.90868 0.87976 0.85878 0.85280 0.86122 0.86280 0.86057 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.50 37.16 0.32 -1.74 16 2 C 0.20 2.46 0.81 -91.77 -0.07 2.39 16 3 O -0.53 -7.49 10.86 -53.49 -0.58 -8.07 16 4 C -0.17 -2.10 4.26 -27.88 -0.12 -2.22 16 5 C 0.50 8.89 7.35 -10.99 -0.08 8.81 16 6 O -0.46 -10.01 11.22 -12.70 -0.14 -10.15 16 7 N -0.66 -12.60 5.39 -11.49 -0.06 -12.67 16 8 C 0.34 8.06 7.42 -154.69 -1.15 6.91 16 9 C -0.24 -5.99 8.59 -38.48 -0.33 -6.32 16 10 C 0.14 3.75 5.58 -106.55 -0.59 3.16 16 11 C -0.46 -11.73 9.13 -37.65 -0.34 -12.08 16 12 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 13 C 0.08 1.83 5.30 -17.34 -0.09 1.73 16 14 N -0.80 -19.59 10.83 55.55 0.60 -18.98 16 15 Si 0.91 17.92 29.57 -169.99 -5.03 12.90 16 16 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 19 C -0.28 -6.91 9.90 -38.71 -0.38 -7.29 16 20 C 0.12 2.81 11.15 -17.68 -0.20 2.61 16 21 N -0.55 -13.93 7.85 -12.52 -0.10 -14.03 16 22 C -0.11 -1.20 4.81 -104.62 -0.50 -1.71 16 23 C -0.10 -1.05 9.35 -39.59 -0.37 -1.42 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 27 C -0.11 -1.10 9.14 -39.58 -0.36 -1.46 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.76 5.51 -51.93 -0.29 1.48 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.37 3.96 9.04 45.56 0.41 4.37 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.01 6.51 -51.93 -0.34 0.67 16 34 H 0.41 6.33 8.70 -40.82 -0.36 5.98 16 35 H 0.13 3.20 6.27 -52.49 -0.33 2.87 16 36 H 0.28 6.24 8.29 -40.82 -0.34 5.91 16 37 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 38 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 39 H 0.13 1.31 7.48 -52.49 -0.39 0.92 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 43 H 0.13 1.03 6.17 -52.49 -0.32 0.71 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -32.20 359.01 -9.91 -42.11 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -4.54 Total: 16.46 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -5.47 Total: -12.98 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.44 Total: -45.68 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.72 Total: -18.21 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.20 -9.91 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780982786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.422 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds