Wall clock time and date at job start Tue Mar 31 2020 15:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42906 * 109.46849 * 2 1 4 4 C 1.53003 * 109.46963 * 240.00494 * 2 1 3 5 5 C 1.50699 * 109.47435 * 59.99538 * 4 2 1 6 6 O 1.21277 * 119.99979 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99595 * 179.97438 * 5 4 2 8 8 C 1.39478 * 119.99413 * 174.97665 * 7 5 4 9 9 C 1.38602 * 119.57527 * 185.36720 * 8 7 5 10 10 C 1.40807 * 118.78975 * 180.02562 * 9 8 7 11 11 C 1.41552 * 120.99412 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99437 * 151.69618 * 11 10 9 13 13 C 1.40034 * 119.99769 * 331.70071 * 11 10 9 14 14 N 1.30740 * 119.99926 * 350.17632 * 13 11 10 15 15 Si 1.86794 * 119.99802 * 170.17853 * 13 11 10 16 16 H 1.48499 * 109.47426 * 89.99840 * 15 13 11 17 17 H 1.48503 * 109.47025 * 210.00034 * 15 13 11 18 18 H 1.48505 * 109.47002 * 329.99566 * 15 13 11 19 19 C 1.41170 * 118.01149 * 0.02562 * 10 9 8 20 20 C 1.37591 * 119.01676 * 359.97438 * 19 10 9 21 21 N 1.32084 * 121.10743 * 359.72212 * 20 19 10 22 22 C 1.50699 * 109.47422 * 120.00025 * 2 1 3 23 23 C 1.38236 * 120.00128 * 270.00448 * 22 2 1 24 24 C 1.38227 * 120.00286 * 180.02562 * 23 22 2 25 25 C 1.38239 * 119.99705 * 359.94757 * 24 23 22 26 26 C 1.38230 * 120.00229 * 0.28338 * 25 24 23 27 27 C 1.38234 * 120.00011 * 359.52900 * 26 25 24 28 28 H 1.09004 * 109.46684 * 299.99711 * 1 2 3 29 29 H 1.08992 * 109.47124 * 59.99927 * 1 2 3 30 30 H 1.09000 * 109.46512 * 180.02562 * 1 2 3 31 31 H 0.96701 * 113.99682 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46879 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.46633 * 299.99365 * 4 2 1 34 34 H 0.96993 * 120.00684 * 354.98344 * 7 5 4 35 35 H 1.07997 * 120.60080 * 0.03082 * 9 8 7 36 36 H 0.96996 * 119.99873 * 180.02562 * 14 13 11 37 37 H 1.08004 * 120.49442 * 179.97438 * 19 10 9 38 38 H 1.07995 * 119.44739 * 180.02562 * 20 19 10 39 39 H 1.08000 * 119.99507 * 359.97438 * 23 22 2 40 40 H 1.07995 * 120.00143 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.99875 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.00242 * 179.72448 * 26 25 24 43 43 H 1.07998 * 120.00479 * 180.21070 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 8 0.8407 0.9755 -2.3685 7 7 1.8637 -0.4710 -3.7038 8 6 1.3148 0.1220 -4.8407 9 6 1.5669 -0.4270 -6.0881 10 6 1.0049 0.1853 -7.2247 11 6 1.2324 -0.3358 -8.5210 12 1 0.4965 -0.1909 -9.2980 13 6 2.4117 -1.0393 -8.7957 14 7 3.3840 -1.0519 -7.9218 15 14 2.5955 -1.9594 -10.4109 16 1 3.1901 -1.0574 -11.4297 17 1 3.4813 -3.1347 -10.2129 18 1 1.2610 -2.4178 -10.8740 19 6 0.2087 1.3352 -7.0329 20 6 0.0148 1.8071 -5.7551 21 7 0.5551 1.1998 -4.7140 22 6 2.0325 -0.7104 1.2304 23 6 2.2628 0.0005 2.3934 24 6 2.7242 -0.6510 3.5218 25 6 2.9541 -2.0137 3.4877 26 6 2.7284 -2.7238 2.3234 27 6 2.2633 -2.0729 1.1960 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 2.9704 1.4237 -0.0004 32 1 3.1301 -0.7216 -1.2491 33 1 1.6767 -1.7489 -1.2493 34 1 2.4799 -1.2145 -3.7942 35 1 2.1831 -1.3085 -6.1864 36 1 4.2009 -1.5389 -8.1122 37 1 -0.2416 1.8370 -7.8766 38 1 -0.5935 2.6860 -5.6003 39 1 2.0831 1.0651 2.4200 40 1 2.9045 -0.0955 4.4303 41 1 3.3142 -2.5228 4.3695 42 1 2.9123 -3.7877 2.2955 43 1 2.0837 -2.6283 0.2874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780982786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:17 Heat of formation + Delta-G solvation = -38.788361 kcal Electronic energy + Delta-G solvation = -26691.944422 eV Core-core repulsion = 22894.313618 eV Total energy + Delta-G solvation = -3797.630804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56941 -40.59042 -39.46753 -37.80634 -36.05280 -35.39803 -33.83776 -32.44984 -31.77027 -31.11521 -30.29531 -28.73221 -27.87764 -24.58435 -23.84569 -23.58933 -23.03121 -21.52611 -20.86575 -19.42986 -19.03373 -17.92818 -17.44828 -17.14694 -16.88216 -16.57383 -16.07430 -15.97826 -15.77627 -15.59719 -15.34728 -14.94146 -14.82228 -14.39541 -14.36303 -14.25153 -14.02918 -13.55672 -13.23453 -13.20871 -12.97551 -12.86482 -12.75125 -12.66199 -12.49810 -12.09775 -11.99662 -11.90411 -11.68287 -11.39372 -11.13682 -11.06590 -10.68253 -9.89357 -9.79400 -9.66853 -9.53596 -8.83889 -8.57814 -6.56954 0.41910 0.52746 0.77032 1.00794 1.41533 1.52823 1.56727 1.96169 2.17425 2.21486 2.83924 2.88145 3.29678 3.51679 3.64855 3.74335 3.96443 4.03378 4.16034 4.19827 4.30792 4.35442 4.51376 4.64895 4.68714 4.74043 4.75475 4.86659 4.91514 4.94343 4.96368 5.10197 5.10795 5.19636 5.24232 5.37951 5.49084 5.59539 5.65456 5.68314 5.70657 5.93543 6.12866 6.17701 6.50908 6.65081 6.80363 6.85068 6.85509 7.42390 7.86408 8.30992 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.002602 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.503455 B =10758.529811 C =11753.636531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.198 3.802 3 O -0.557 6.557 4 C -0.156 4.156 5 C 0.492 3.508 6 O -0.498 6.498 7 N -0.657 5.657 8 C 0.335 3.665 9 C -0.255 4.255 10 C 0.113 3.887 11 C -0.487 4.487 12 H 0.082 0.918 13 C 0.037 3.963 14 N -0.820 5.820 15 Si 0.989 3.011 16 H -0.265 1.265 17 H -0.263 1.263 18 H -0.259 1.259 19 C -0.296 4.296 20 C 0.111 3.889 21 N -0.573 5.573 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.381 0.619 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.421 0.579 35 H 0.126 0.874 36 H 0.291 0.709 37 H 0.114 0.886 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -7.684 17.924 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.157 3.843 3 O -0.363 6.363 4 C -0.196 4.196 5 C 0.279 3.721 6 O -0.369 6.369 7 N -0.305 5.305 8 C 0.109 3.891 9 C -0.281 4.281 10 C 0.105 3.895 11 C -0.518 4.518 12 H 0.100 0.900 13 C -0.179 4.179 14 N -0.446 5.446 15 Si 0.809 3.191 16 H -0.189 1.189 17 H -0.187 1.187 18 H -0.183 1.183 19 C -0.320 4.320 20 C -0.043 4.043 21 N -0.293 5.293 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.139 4.139 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.229 0.771 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.258 0.742 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.165 0.835 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.867 -6.604 19.009 20.327 hybrid contribution 1.092 -0.766 -1.796 2.237 sum 3.960 -7.369 17.213 19.138 Atomic orbital electron populations 1.21944 0.92817 1.02505 1.03022 1.19543 0.94437 0.81260 0.89090 1.86693 1.27064 1.25818 1.96724 1.22545 1.04280 1.01948 0.90809 1.21343 0.81051 0.85108 0.84582 1.90754 1.35533 1.24936 1.85724 1.43588 1.46924 1.35948 1.04002 1.18487 0.93207 0.91335 0.86094 1.21585 1.11467 1.04874 0.90160 1.18034 0.88368 0.89228 0.93895 1.19833 1.04335 1.31536 0.96125 0.90021 1.26790 0.94065 0.94574 1.02450 1.69784 1.04841 1.33055 1.36906 0.85100 0.79370 0.77993 0.76619 1.18938 1.18746 1.18311 1.22119 1.11233 1.01004 0.97634 1.22211 0.96300 0.97808 0.88017 1.67375 1.16213 1.11604 1.34134 1.20418 1.01113 0.94970 0.95518 1.21100 0.99085 1.00476 0.92689 1.21413 0.99326 0.95339 0.98479 1.21525 0.99436 0.94324 0.98940 1.21469 0.98927 1.01101 0.92757 1.21351 0.99212 0.93431 0.99860 0.92539 0.91880 0.90400 0.77130 0.86123 0.85375 0.74151 0.85674 0.89829 0.86746 0.83514 0.86071 0.84447 0.83951 0.83820 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.50 71.98 0.61 -3.49 16 2 C 0.20 4.82 0.81 -11.54 -0.01 4.81 16 3 O -0.56 -15.73 10.86 -131.52 -1.43 -17.15 16 4 C -0.16 -3.55 4.26 29.85 0.13 -3.42 16 5 C 0.49 17.52 7.35 87.66 0.64 18.16 16 6 O -0.50 -22.36 11.22 14.44 0.16 -22.20 16 7 N -0.66 -24.92 5.39 -308.65 -1.66 -26.58 16 8 C 0.34 16.36 7.42 132.75 0.98 17.34 16 9 C -0.26 -13.15 8.59 22.99 0.20 -12.96 16 10 C 0.11 6.09 5.58 -21.11 -0.12 5.97 16 11 C -0.49 -25.39 9.13 23.52 0.21 -25.18 16 12 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 13 C 0.04 1.78 5.30 85.29 0.45 2.23 16 14 N -0.82 -40.14 10.83 21.84 0.24 -39.91 16 15 Si 0.99 36.03 29.57 68.60 2.03 38.06 16 16 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 17 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 19 C -0.30 -14.93 9.90 22.84 0.23 -14.70 16 20 C 0.11 5.43 11.15 84.50 0.94 6.38 16 21 N -0.57 -29.74 7.85 -193.52 -1.52 -31.26 16 22 C -0.12 -2.37 4.81 -19.86 -0.10 -2.47 16 23 C -0.12 -2.23 9.35 22.27 0.21 -2.02 16 24 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 25 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 26 C -0.12 -1.74 10.05 22.27 0.22 -1.51 16 27 C -0.12 -1.97 9.14 22.27 0.20 -1.76 16 28 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 2.29 5.51 -2.39 -0.01 2.28 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.38 8.10 9.04 -74.06 -0.67 7.43 16 32 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.13 2.20 6.51 -2.38 -0.02 2.19 16 34 H 0.42 12.80 8.70 -92.71 -0.81 11.99 16 35 H 0.13 6.38 6.27 -2.91 -0.02 6.36 16 36 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 37 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 38 H 0.15 6.27 8.06 -2.91 -0.02 6.25 16 39 H 0.12 2.45 7.48 -2.91 -0.02 2.43 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.14 1.79 6.17 -2.91 -0.02 1.77 16 Total: -1.00 -71.67 359.01 2.67 -69.00 By element: Atomic # 1 Polarization: 46.31 SS G_CDS: -0.41 Total: 45.90 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 5.26 Total: -15.86 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -2.95 Total: -97.75 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.27 Total: -39.35 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -71.67 2.67 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780982786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.211 kcal (2) G-P(sol) polarization free energy of solvation -71.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds