Wall clock time and date at job start Tue Mar 31 2020 15:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 N 1.46494 * 109.47545 * 120.00479 * 2 1 3 5 5 N 1.40045 * 126.15435 * 307.95391 * 4 2 1 6 6 C 1.31016 * 108.87564 * 179.97438 * 5 4 2 7 7 C 1.39129 * 108.85193 * 0.02562 * 6 5 4 8 8 C 1.36852 * 126.16184 * 127.95950 * 4 2 1 9 9 C 1.46301 * 126.52214 * 0.02773 * 8 4 2 10 10 C 1.35503 * 120.00478 * 298.14233 * 9 8 4 11 11 C 1.41684 * 120.00026 * 354.87292 * 10 9 8 12 12 O 1.21817 * 119.99748 * 354.23644 * 11 10 9 13 13 C 1.47680 * 119.99928 * 174.23114 * 11 10 9 14 14 C 1.39803 * 120.07861 * 359.72965 * 13 11 10 15 15 C 1.37640 * 119.92327 * 179.78425 * 14 13 11 16 16 C 1.39161 * 120.07504 * 0.46672 * 15 14 13 17 17 O 1.35569 * 119.92189 * 179.76396 * 16 15 14 18 18 C 1.34780 * 116.99704 * 185.53386 * 17 16 15 19 19 H 1.08000 * 120.00068 * 5.93427 * 18 17 16 20 20 C 1.38747 * 119.99418 * 185.93780 * 18 17 16 21 21 N 1.31482 * 120.00335 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99498 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47018 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47044 * 119.99884 * 22 20 18 25 25 H 1.48505 * 109.46861 * 239.99787 * 22 20 18 26 26 C 1.39161 * 120.15557 * 359.78258 * 16 15 14 27 27 C 1.37644 * 120.07425 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.47255 * 305.26308 * 1 2 3 29 29 H 1.09001 * 109.47623 * 65.26813 * 1 2 3 30 30 H 1.09005 * 109.46998 * 185.27058 * 1 2 3 31 31 H 1.09008 * 109.46954 * 240.00869 * 2 1 3 32 32 H 1.08998 * 109.46881 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47033 * 300.00779 * 3 2 1 34 34 H 1.09007 * 109.46853 * 59.99905 * 3 2 1 35 35 H 1.07998 * 125.56873 * 179.97438 * 6 5 4 36 36 H 1.08006 * 126.17897 * 180.02562 * 7 6 5 37 37 H 1.08005 * 119.99271 * 118.14814 * 9 8 4 38 38 H 1.07995 * 120.00575 * 174.86823 * 10 9 8 39 39 H 1.08003 * 120.03529 * 0.02562 * 14 13 11 40 40 H 1.07995 * 119.96418 * 180.22854 * 15 14 13 41 41 H 0.97001 * 120.00177 * 179.97438 * 21 20 18 42 42 H 1.07998 * 119.96152 * 179.97438 * 26 16 15 43 43 H 1.08000 * 120.03838 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.6382 -0.4240 2.5172 6 6 2.2805 -1.2400 3.3160 7 6 3.0998 -2.0649 2.5519 8 6 2.9283 -1.7125 1.2235 9 6 3.5935 -2.3172 0.0693 10 6 2.8610 -2.9396 -0.8857 11 6 1.4638 -3.1005 -0.7143 12 8 0.9374 -2.7747 0.3349 13 6 0.6456 -3.6630 -1.8075 14 6 1.2472 -4.0320 -3.0143 15 6 0.4823 -4.5601 -4.0295 16 6 -0.8899 -4.7178 -3.8592 17 8 -1.6410 -5.2338 -4.8629 18 6 -2.9761 -5.2544 -4.6795 19 1 -3.4089 -4.7848 -3.8085 20 6 -3.7944 -5.8791 -5.6097 21 7 -3.2675 -6.4504 -6.6702 22 14 -5.6449 -5.9072 -5.3558 23 1 -5.9824 -5.1994 -4.0947 24 1 -6.3114 -5.2305 -6.4974 25 1 -6.1119 -7.3145 -5.2734 26 6 -1.4928 -4.3466 -2.6611 27 6 -0.7331 -3.8225 -1.6399 28 1 -0.3633 0.5933 0.8390 29 1 -0.3634 0.4299 -0.9334 30 1 -0.3633 -1.0234 0.0944 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 2.1895 -1.2672 4.3918 36 1 3.7513 -2.8405 2.9268 37 1 4.6686 -2.2675 -0.0215 38 1 3.3420 -3.3131 -1.7776 39 1 2.3115 -3.9065 -3.1484 40 1 0.9469 -4.8488 -4.9607 41 1 -3.8396 -6.8875 -7.3203 42 1 -2.5580 -4.4700 -2.5325 43 1 -1.2017 -3.5343 -0.7106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794935304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:26 Heat of formation + Delta-G solvation = 64.134891 kcal Electronic energy + Delta-G solvation = -26971.949168 eV Core-core repulsion = 23178.781451 eV Total energy + Delta-G solvation = -3793.167717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06977 -39.59415 -38.65572 -36.31375 -35.52608 -33.88006 -32.58716 -30.60863 -30.17370 -29.61907 -28.72174 -27.31621 -25.77077 -24.67407 -22.90136 -22.17826 -21.58160 -20.63923 -19.82848 -18.64331 -18.06491 -17.55253 -16.60835 -16.24039 -15.14778 -15.01777 -14.79052 -14.63995 -14.35165 -14.17200 -14.09606 -13.89344 -13.69708 -13.45644 -13.26499 -12.92683 -12.83673 -12.70384 -12.32119 -12.18997 -12.06516 -11.88881 -11.67054 -11.44362 -11.35217 -11.31728 -10.98233 -10.76680 -10.56905 -10.44735 -9.94938 -9.60714 -9.47200 -9.06904 -8.79403 -8.42831 -8.20768 -7.46810 -6.71768 -4.26902 0.55543 1.71436 2.09429 2.15300 2.63032 2.97263 3.00255 3.01881 3.07765 3.41468 3.77678 4.42179 4.43266 4.46898 4.53173 4.84566 4.88690 4.94233 4.97339 5.06557 5.18154 5.40869 5.42722 5.49832 5.55528 5.56681 5.59228 5.73415 5.76000 5.78378 5.90597 5.99270 6.01807 6.07935 6.12120 6.29577 6.33268 6.43251 6.69155 6.82978 6.85454 6.93621 7.15601 7.17165 7.19893 7.57340 7.74058 7.89311 7.99960 8.73233 9.38920 10.44627 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002722 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.880007 B =10284.355668 C =10706.120766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 C -0.161 4.161 4 N -0.331 5.331 5 N -0.290 5.290 6 C 0.038 3.962 7 C -0.261 4.261 8 C 0.120 3.880 9 C -0.027 4.027 10 C -0.197 4.197 11 C 0.409 3.591 12 O -0.461 6.461 13 C -0.269 4.269 14 C -0.031 4.031 15 C -0.204 4.204 16 C 0.174 3.826 17 O -0.159 6.159 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.043 3.957 21 N -0.849 5.849 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.248 4.248 27 C -0.008 4.008 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.176 0.824 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.275 0.725 42 H 0.131 0.869 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 9.704 10.671 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 C -0.219 4.219 4 N -0.114 5.114 5 N -0.112 5.112 6 C -0.146 4.146 7 C -0.291 4.291 8 C -0.008 4.008 9 C -0.047 4.047 10 C -0.218 4.218 11 C 0.294 3.706 12 O -0.342 6.342 13 C -0.272 4.272 14 C -0.049 4.049 15 C -0.224 4.224 16 C 0.117 3.883 17 O -0.059 6.059 18 C -0.468 4.468 19 H 0.116 0.884 20 C -0.164 4.164 21 N -0.481 5.481 22 Si 0.768 3.232 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.268 4.268 27 C -0.026 4.026 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.193 0.807 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.149 0.851 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.964 10.672 10.552 18.586 hybrid contribution -0.277 -1.019 -0.036 1.057 sum 10.687 9.653 10.515 17.832 Atomic orbital electron populations 1.22127 0.92724 1.04597 1.02352 1.21208 0.96399 0.92779 0.83803 1.22187 1.01357 0.95043 1.03324 1.49015 1.30683 1.26344 1.05358 1.77145 1.22225 1.24986 0.86865 1.23438 0.96312 0.95189 0.99637 1.21552 1.09915 1.07190 0.90408 1.19915 0.93291 0.92714 0.94862 1.21949 0.99414 0.93485 0.89901 1.23101 0.96854 1.01636 1.00166 1.19174 0.88397 0.76127 0.86882 1.90693 1.74938 1.41088 1.27465 1.19712 0.94710 1.15981 0.96749 1.20827 0.98247 0.94245 0.91628 1.20145 0.91472 1.09827 1.00907 1.19659 0.91132 0.90142 0.87351 1.83919 1.19673 1.66614 1.35684 1.21555 0.77861 1.37106 1.10306 0.88419 1.25418 1.01023 0.95162 0.94779 1.70005 1.36710 1.31743 1.09665 0.85584 0.79790 0.78728 0.79061 1.18776 1.19820 1.19826 1.21126 1.01169 1.10009 0.94455 1.20877 0.92389 0.92233 0.97139 0.91619 0.91314 0.90173 0.88968 0.92387 0.90711 0.91297 0.80722 0.84060 0.83601 0.84033 0.86339 0.85974 0.91524 0.85107 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.20 37.16 0.34 -1.78 16 2 C 0.16 1.99 2.66 -67.93 -0.18 1.81 16 3 C -0.16 -1.61 9.52 37.16 0.35 -1.26 16 4 N -0.33 -4.65 2.35 -50.88 -0.12 -4.77 16 5 N -0.29 -4.37 12.33 30.50 0.38 -3.99 16 6 C 0.04 0.49 11.96 -17.57 -0.21 0.28 16 7 C -0.26 -3.34 10.84 -39.15 -0.42 -3.77 16 8 C 0.12 1.59 4.47 -82.29 -0.37 1.22 16 9 C -0.03 -0.29 9.62 -37.32 -0.36 -0.65 16 10 C -0.20 -2.26 8.64 -39.24 -0.34 -2.60 16 11 C 0.41 6.23 5.79 -34.41 -0.20 6.03 16 12 O -0.46 -8.03 10.47 5.08 0.05 -7.98 16 13 C -0.27 -4.57 5.88 -104.87 -0.62 -5.19 16 14 C -0.03 -0.49 9.42 -39.21 -0.37 -0.86 16 15 C -0.20 -3.91 9.97 -39.46 -0.39 -4.30 16 16 C 0.17 3.93 6.66 -38.90 -0.26 3.67 16 17 O -0.16 -4.23 9.74 0.75 0.01 -4.22 16 18 C -0.39 -10.32 9.44 30.92 0.29 -10.03 16 19 H 0.10 2.38 5.28 -52.49 -0.28 2.11 16 20 C 0.04 1.11 5.50 -17.51 -0.10 1.01 16 21 N -0.85 -23.40 13.67 55.48 0.76 -22.65 16 22 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 26 C -0.25 -5.19 9.11 -39.46 -0.36 -5.55 16 27 C -0.01 -0.15 9.59 -39.21 -0.38 -0.52 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.28 6.13 -51.93 -0.32 0.96 16 31 H 0.09 1.12 6.11 -51.92 -0.32 0.80 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.14 1.24 6.25 -52.49 -0.33 0.91 16 39 H 0.12 1.42 6.21 -52.48 -0.33 1.09 16 40 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.13 2.74 5.69 -52.49 -0.30 2.44 16 43 H 0.12 2.09 7.64 -52.49 -0.40 1.69 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -31.29 362.27 -7.26 -38.55 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.21 Total: 7.72 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -3.56 Total: -22.48 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 1.02 Total: -31.40 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.06 Total: -12.20 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.29 -7.26 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794935304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.687 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds