Wall clock time and date at job start Tue Mar 31 2020 15:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 N 1.46494 * 109.47545 * 120.00479 * 2 1 3 5 5 N 1.40045 * 126.15435 * 307.95391 * 4 2 1 6 6 C 1.31016 * 108.87564 * 179.97438 * 5 4 2 7 7 C 1.39129 * 108.85193 * 0.02562 * 6 5 4 8 8 C 1.36852 * 126.16184 * 127.95950 * 4 2 1 9 9 C 1.46301 * 126.52214 * 0.02773 * 8 4 2 10 10 C 1.35503 * 120.00478 * 298.14233 * 9 8 4 11 11 C 1.41684 * 120.00026 * 354.87292 * 10 9 8 12 12 O 1.21817 * 119.99748 * 354.23644 * 11 10 9 13 13 C 1.47680 * 119.99928 * 174.23114 * 11 10 9 14 14 C 1.39803 * 120.07861 * 359.72965 * 13 11 10 15 15 C 1.37640 * 119.92327 * 179.78425 * 14 13 11 16 16 C 1.39161 * 120.07504 * 0.46672 * 15 14 13 17 17 O 1.35569 * 119.92189 * 179.76396 * 16 15 14 18 18 C 1.34780 * 116.99704 * 185.53386 * 17 16 15 19 19 H 1.08000 * 120.00068 * 5.93427 * 18 17 16 20 20 C 1.38747 * 119.99418 * 185.93780 * 18 17 16 21 21 N 1.31482 * 120.00335 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99498 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47018 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47044 * 119.99884 * 22 20 18 25 25 H 1.48505 * 109.46861 * 239.99787 * 22 20 18 26 26 C 1.39161 * 120.15557 * 359.78258 * 16 15 14 27 27 C 1.37644 * 120.07425 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.47255 * 305.26308 * 1 2 3 29 29 H 1.09001 * 109.47623 * 65.26813 * 1 2 3 30 30 H 1.09005 * 109.46998 * 185.27058 * 1 2 3 31 31 H 1.09008 * 109.46954 * 240.00869 * 2 1 3 32 32 H 1.08998 * 109.46881 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47033 * 300.00779 * 3 2 1 34 34 H 1.09007 * 109.46853 * 59.99905 * 3 2 1 35 35 H 1.07998 * 125.56873 * 179.97438 * 6 5 4 36 36 H 1.08006 * 126.17897 * 180.02562 * 7 6 5 37 37 H 1.08005 * 119.99271 * 118.14814 * 9 8 4 38 38 H 1.07995 * 120.00575 * 174.86823 * 10 9 8 39 39 H 1.08003 * 120.03529 * 0.02562 * 14 13 11 40 40 H 1.07995 * 119.96418 * 180.22854 * 15 14 13 41 41 H 0.97001 * 120.00177 * 179.97438 * 21 20 18 42 42 H 1.07998 * 119.96152 * 179.97438 * 26 16 15 43 43 H 1.08000 * 120.03838 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.6382 -0.4240 2.5172 6 6 2.2805 -1.2400 3.3160 7 6 3.0998 -2.0649 2.5519 8 6 2.9283 -1.7125 1.2235 9 6 3.5935 -2.3172 0.0693 10 6 2.8610 -2.9396 -0.8857 11 6 1.4638 -3.1005 -0.7143 12 8 0.9374 -2.7747 0.3349 13 6 0.6456 -3.6630 -1.8075 14 6 1.2472 -4.0320 -3.0143 15 6 0.4823 -4.5601 -4.0295 16 6 -0.8899 -4.7178 -3.8592 17 8 -1.6410 -5.2338 -4.8629 18 6 -2.9761 -5.2544 -4.6795 19 1 -3.4089 -4.7848 -3.8085 20 6 -3.7944 -5.8791 -5.6097 21 7 -3.2675 -6.4504 -6.6702 22 14 -5.6449 -5.9072 -5.3558 23 1 -5.9824 -5.1994 -4.0947 24 1 -6.3114 -5.2305 -6.4974 25 1 -6.1119 -7.3145 -5.2734 26 6 -1.4928 -4.3466 -2.6611 27 6 -0.7331 -3.8225 -1.6399 28 1 -0.3633 0.5933 0.8390 29 1 -0.3634 0.4299 -0.9334 30 1 -0.3633 -1.0234 0.0944 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 2.1895 -1.2672 4.3918 36 1 3.7513 -2.8405 2.9268 37 1 4.6686 -2.2675 -0.0215 38 1 3.3420 -3.3131 -1.7776 39 1 2.3115 -3.9065 -3.1484 40 1 0.9469 -4.8488 -4.9607 41 1 -3.8396 -6.8875 -7.3203 42 1 -2.5580 -4.4700 -2.5325 43 1 -1.2017 -3.5343 -0.7106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794935304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:26 Heat of formation + Delta-G solvation = 46.661454 kcal Electronic energy + Delta-G solvation = -26972.706873 eV Core-core repulsion = 23178.781451 eV Total energy + Delta-G solvation = -3793.925422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.08579 -41.05718 -40.11330 -37.89615 -36.48031 -34.86738 -34.42395 -32.04910 -31.58091 -30.68005 -29.86623 -28.24975 -27.57641 -25.90285 -23.97070 -23.66853 -22.86801 -21.70806 -20.94810 -20.10856 -19.44990 -18.96960 -17.97946 -17.39449 -16.49631 -16.28592 -16.20685 -15.91221 -15.67498 -15.54067 -15.44277 -15.11871 -14.87850 -14.63622 -14.46782 -14.28888 -14.11611 -13.74374 -13.60852 -13.30419 -13.17746 -13.13688 -13.07858 -12.96931 -12.54767 -12.35299 -12.33289 -12.28196 -12.14653 -11.43681 -11.32686 -10.97397 -10.89146 -10.60499 -9.94223 -9.81464 -9.23051 -9.10267 -8.57660 -6.24273 -0.51326 0.41155 0.54422 1.13107 1.33409 1.39596 1.50684 1.68398 1.99455 2.11296 2.18072 2.83274 3.14981 3.27682 3.41104 3.49519 3.62579 3.92991 3.98168 4.02550 4.04746 4.13964 4.33389 4.42149 4.54023 4.56751 4.59325 4.64574 4.69560 4.75119 4.80410 4.87341 4.91608 4.98461 5.04894 5.12767 5.14718 5.20734 5.21522 5.32823 5.42071 5.57805 5.63187 5.89309 5.91839 6.03255 6.22193 6.76139 6.87084 6.90621 7.61489 8.64185 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002722 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.880007 B =10284.355668 C =10706.120766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 C -0.153 4.153 4 N -0.338 5.338 5 N -0.327 5.327 6 C 0.029 3.971 7 C -0.271 4.271 8 C 0.100 3.900 9 C 0.002 3.998 10 C -0.213 4.213 11 C 0.413 3.587 12 O -0.482 6.482 13 C -0.252 4.252 14 C -0.009 4.009 15 C -0.209 4.209 16 C 0.145 3.855 17 O -0.212 6.212 18 C -0.418 4.418 19 H 0.101 0.899 20 C -0.013 4.013 21 N -0.908 5.908 22 Si 1.015 2.985 23 H -0.255 1.255 24 H -0.265 1.265 25 H -0.267 1.267 26 C -0.257 4.257 27 C -0.018 4.018 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.199 0.801 36 H 0.163 0.837 37 H 0.194 0.806 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.133 0.867 41 H 0.277 0.723 42 H 0.118 0.882 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.461 10.918 12.073 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 C -0.211 4.211 4 N -0.122 5.122 5 N -0.150 5.150 6 C -0.154 4.154 7 C -0.300 4.300 8 C -0.028 4.028 9 C -0.018 4.018 10 C -0.232 4.232 11 C 0.299 3.701 12 O -0.364 6.364 13 C -0.254 4.254 14 C -0.027 4.027 15 C -0.228 4.228 16 C 0.092 3.908 17 O -0.116 6.116 18 C -0.494 4.494 19 H 0.119 0.881 20 C -0.212 4.212 21 N -0.544 5.544 22 Si 0.835 3.165 23 H -0.179 1.179 24 H -0.190 1.190 25 H -0.191 1.191 26 C -0.276 4.276 27 C -0.036 4.036 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.216 0.784 36 H 0.181 0.819 37 H 0.211 0.789 38 H 0.197 0.803 39 H 0.194 0.806 40 H 0.151 0.849 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.261 11.917 12.004 22.124 hybrid contribution -0.923 -1.175 -0.043 1.495 sum 13.337 10.742 11.961 20.889 Atomic orbital electron populations 1.22057 0.93952 1.02482 1.02808 1.21352 0.95471 0.94219 0.83663 1.22126 1.01813 0.93441 1.03679 1.49160 1.30907 1.26834 1.05263 1.77097 1.23601 1.26497 0.87814 1.23969 0.95810 0.94726 1.00882 1.21936 1.10122 1.07529 0.90399 1.20556 0.93287 0.92673 0.96268 1.22468 1.01417 0.90486 0.87429 1.23080 0.94108 1.03678 1.02375 1.19462 0.90139 0.74945 0.85530 1.90727 1.75871 1.41597 1.28193 1.20228 0.94102 1.13216 0.97870 1.21345 1.00614 0.91225 0.89507 1.20519 0.90257 1.09655 1.02417 1.20239 0.92601 0.90467 0.87482 1.83899 1.19899 1.70057 1.37739 1.21881 0.78563 1.38074 1.10874 0.88141 1.26552 1.05823 0.94577 0.94290 1.70118 1.38485 1.34498 1.11285 0.84574 0.73633 0.78994 0.79341 1.17862 1.18971 1.19140 1.21131 1.00981 1.10644 0.94884 1.20987 0.93646 0.92383 0.96605 0.92422 0.89840 0.93211 0.88311 0.91486 0.88770 0.92525 0.78412 0.81945 0.78889 0.80253 0.80622 0.84940 0.91375 0.86388 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.20 71.98 0.66 -3.33 16 2 C 0.15 3.49 2.66 44.99 0.12 3.61 16 3 C -0.15 -2.68 9.52 71.98 0.69 -2.00 16 4 N -0.34 -8.76 2.35 -314.87 -0.74 -9.50 16 5 N -0.33 -9.48 12.33 -57.42 -0.71 -10.19 16 6 C 0.03 0.70 11.96 85.03 1.02 1.72 16 7 C -0.27 -6.10 10.84 22.55 0.24 -5.85 16 8 C 0.10 2.30 4.47 40.52 0.18 2.48 16 9 C 0.00 0.02 9.62 23.74 0.23 0.25 16 10 C -0.21 -3.63 8.64 22.49 0.19 -3.44 16 11 C 0.41 11.12 5.79 25.62 0.15 11.27 16 12 O -0.48 -15.80 10.47 -4.72 -0.05 -15.85 16 13 C -0.25 -7.88 5.88 -20.03 -0.12 -7.99 16 14 C -0.01 -0.26 9.42 22.51 0.21 -0.04 16 15 C -0.21 -7.77 9.97 22.35 0.22 -7.55 16 16 C 0.15 6.77 6.66 22.71 0.15 6.92 16 17 O -0.21 -12.00 9.74 -20.24 -0.20 -12.20 16 18 C -0.42 -23.41 9.44 67.94 0.64 -22.77 16 19 H 0.10 5.26 5.28 -2.91 -0.02 5.24 16 20 C -0.01 -0.69 5.50 84.87 0.47 -0.22 16 21 N -0.91 -53.05 13.67 21.63 0.30 -52.76 16 22 Si 1.02 41.40 29.55 68.60 2.03 43.43 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 25 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 26 C -0.26 -11.15 9.11 22.35 0.20 -10.94 16 27 C -0.02 -0.66 9.59 22.51 0.22 -0.45 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.58 6.13 -2.38 -0.01 1.57 16 31 H 0.10 2.06 6.11 -2.38 -0.01 2.05 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.20 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.18 1.70 6.25 -2.91 -0.02 1.68 16 39 H 0.18 2.96 6.21 -2.91 -0.02 2.94 16 40 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 41 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.12 5.31 5.69 -2.91 -0.02 5.29 16 43 H 0.12 4.31 7.64 -2.91 -0.02 4.28 16 Total: -1.00 -75.26 362.27 7.14 -68.11 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 1.04 Total: 27.29 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 5.48 Total: -38.34 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.15 Total: -72.45 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.25 Total: -28.04 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -75.26 7.14 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794935304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.776 kcal (2) G-P(sol) polarization free energy of solvation -75.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds