Wall clock time and date at job start Tue Mar 31 2020 14:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38385 * 120.00361 * 2 1 4 4 N 1.32118 * 120.00185 * 179.97438 * 3 2 1 5 5 C 1.32151 * 119.99861 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00215 * 179.97438 * 5 4 3 7 7 O 1.45198 * 109.47466 * 179.97438 * 6 5 4 8 8 C 1.34224 * 117.00245 * 180.02562 * 7 6 5 9 9 O 1.20824 * 120.00022 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99975 * 180.27819 * 8 7 6 11 11 C 1.52998 * 109.47062 * 179.72416 * 10 8 7 12 12 H 1.09005 * 109.46926 * 304.99682 * 11 10 8 13 13 C 1.50702 * 109.47382 * 64.99878 * 11 10 8 14 14 H 1.08000 * 119.99483 * 29.59727 * 13 11 10 15 15 C 1.37875 * 120.00170 * 209.59650 * 13 11 10 16 16 N 1.31515 * 120.00022 * 4.94237 * 15 13 11 17 17 Si 1.86798 * 120.00014 * 184.95223 * 15 13 11 18 18 H 1.48500 * 109.47437 * 59.99227 * 17 15 13 19 19 H 1.48491 * 109.47206 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46902 * 299.99970 * 17 15 13 21 21 C 1.50704 * 109.47497 * 185.00222 * 11 10 8 22 22 C 1.38240 * 119.99348 * 296.77769 * 21 11 10 23 23 C 1.38242 * 119.99501 * 179.80752 * 22 21 11 24 24 C 1.38238 * 119.99840 * 0.39530 * 23 22 21 25 25 C 1.38233 * 120.00125 * 359.85581 * 24 23 22 26 26 C 1.38227 * 120.00363 * 117.04262 * 21 11 10 27 27 C 1.38346 * 120.00429 * 0.25449 * 5 4 3 28 28 N 1.32125 * 120.00116 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47018 * 90.00201 * 1 2 3 30 30 H 1.09001 * 109.46908 * 210.00340 * 1 2 3 31 31 H 1.08999 * 109.47022 * 330.00017 * 1 2 3 32 32 H 1.08003 * 119.99823 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46907 * 60.00112 * 6 5 4 34 34 H 1.08994 * 109.46947 * 300.00625 * 6 5 4 35 35 H 1.09000 * 109.47133 * 299.72341 * 10 8 7 36 36 H 1.09005 * 109.47243 * 59.72833 * 10 8 7 37 37 H 0.97005 * 119.99831 * 179.97438 * 16 15 13 38 38 H 1.07991 * 120.00535 * 359.97438 * 22 21 11 39 39 H 1.07994 * 119.99599 * 180.22829 * 23 22 21 40 40 H 1.07996 * 119.99400 * 179.83413 * 24 23 22 41 41 H 1.08000 * 119.99581 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.00003 * 359.97438 * 26 21 11 43 43 H 1.07999 * 120.00432 * 179.72309 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6880 0.0537 0.0015 7 8 6.1719 -1.3152 0.0034 8 6 7.5026 -1.4912 0.0041 9 8 8.2387 -0.5331 0.0038 10 6 8.0785 -2.8838 -0.0003 11 6 9.6064 -2.8038 -0.0053 12 1 9.9355 -2.1947 -0.8473 13 6 10.0811 -2.1801 1.2819 14 1 9.5028 -2.3013 2.1859 15 6 11.2535 -1.4550 1.3053 16 7 11.9070 -1.2252 0.1874 17 14 11.9139 -0.7994 2.9250 18 1 12.1743 -1.9327 3.8486 19 1 13.1781 -0.0597 2.6809 20 1 10.9143 0.1150 3.5332 21 6 10.1817 -4.1908 -0.1336 22 6 9.9554 -5.1272 0.8578 23 6 10.4798 -6.4007 0.7382 24 6 11.2372 -6.7352 -0.3688 25 6 11.4677 -5.7971 -1.3576 26 6 10.9401 -4.5249 -1.2399 27 6 3.4892 -1.1442 -0.0033 28 7 2.1677 -1.1442 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6591 2.1338 -0.0004 33 1 6.0513 0.5683 0.8911 34 1 6.0513 0.5668 -0.8888 35 1 7.7455 -3.4175 0.8899 36 1 7.7395 -3.4143 -0.8901 37 1 12.7317 -0.7147 0.2039 38 1 9.3669 -4.8648 1.7243 39 1 10.3000 -7.1334 1.5110 40 1 11.6491 -7.7293 -0.4608 41 1 12.0598 -6.0584 -2.2222 42 1 11.1200 -3.7921 -2.0126 43 1 4.0292 -2.0796 -0.0069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795986901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:34 Heat of formation + Delta-G solvation = -36.598415 kcal Electronic energy + Delta-G solvation = -26246.010372 eV Core-core repulsion = 22448.474532 eV Total energy + Delta-G solvation = -3797.535841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28988 -41.32362 -39.87380 -37.72401 -35.85067 -35.74391 -34.03929 -33.46723 -31.49448 -31.10736 -30.20836 -27.79285 -26.58389 -25.79660 -24.64772 -23.20672 -23.04394 -22.12220 -20.96958 -19.02528 -18.58314 -18.14354 -18.00962 -17.55737 -17.23836 -16.77152 -16.52510 -16.21284 -16.15156 -15.60903 -15.46914 -14.90245 -14.60852 -14.32005 -14.03400 -13.77635 -13.70863 -13.54245 -13.48187 -13.39080 -13.16740 -13.15008 -12.81690 -12.66682 -12.58462 -12.52527 -12.24008 -11.84870 -11.81317 -11.71858 -11.39362 -11.23781 -10.96257 -10.47625 -10.14632 -10.05592 -9.52868 -9.21414 -8.06220 -6.10423 -0.33811 0.02861 0.79242 0.82638 1.38384 1.39895 1.44878 1.47483 1.52356 2.44951 2.54524 2.94466 3.17756 3.21247 3.34312 3.41996 3.68167 3.97782 4.01828 4.11947 4.13312 4.24957 4.36486 4.38472 4.45396 4.53856 4.54381 4.57870 4.72987 4.79075 4.86269 4.90650 4.96952 5.08591 5.13012 5.37794 5.40203 5.45681 5.54070 5.63241 5.76682 5.85260 5.95196 6.14856 6.19844 6.38248 6.46423 6.69599 6.96985 7.02776 7.53113 9.02664 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002949 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.111174 B = 9492.172615 C =10914.342912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.075 3.925 3 C 0.058 3.942 4 N -0.453 5.453 5 C 0.055 3.945 6 C 0.127 3.873 7 O -0.358 6.358 8 C 0.465 3.535 9 O -0.507 6.507 10 C -0.089 4.089 11 C 0.079 3.921 12 H 0.031 0.969 13 C -0.497 4.497 14 H 0.051 0.949 15 C 0.025 3.975 16 N -0.913 5.913 17 Si 0.934 3.066 18 H -0.267 1.267 19 H -0.290 1.290 20 H -0.279 1.279 21 C -0.048 4.048 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.141 4.141 27 C 0.071 3.929 28 N -0.458 5.458 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.210 0.790 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.255 0.745 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.279 -3.374 -1.449 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 C -0.104 4.104 4 N -0.169 5.169 5 C -0.084 4.084 6 C 0.052 3.948 7 O -0.276 6.276 8 C 0.308 3.692 9 O -0.393 6.393 10 C -0.126 4.126 11 C 0.060 3.940 12 H 0.050 0.950 13 C -0.535 4.535 14 H 0.069 0.931 15 C -0.174 4.174 16 N -0.552 5.552 17 Si 0.761 3.239 18 H -0.192 1.192 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.048 4.048 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.164 4.164 25 C -0.147 4.147 26 C -0.159 4.159 27 C -0.087 4.087 28 N -0.174 5.174 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.227 0.773 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.149 0.851 42 H 0.114 0.886 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.862 -2.980 -1.511 19.156 hybrid contribution 1.170 1.130 0.719 1.778 sum -17.693 -1.850 -0.792 17.807 Atomic orbital electron populations 1.20840 0.84515 1.05321 1.04788 1.23124 1.00549 0.89174 0.93838 1.24237 0.89032 1.01076 0.96039 1.67963 1.10627 1.28997 1.09348 1.21533 0.95798 0.91067 0.99958 1.21102 0.88218 0.81628 1.03874 1.86371 1.25614 1.30367 1.85247 1.24208 0.79084 0.93899 0.71986 1.90749 1.60435 1.43895 1.44179 1.21548 0.97044 0.88675 1.05333 1.17695 0.88571 0.89797 0.97958 0.95030 1.21013 1.06707 1.31154 0.94600 0.93096 1.25485 0.97795 0.96017 0.98112 1.70028 1.17107 1.40866 1.27246 0.85990 0.77514 0.78683 0.81732 1.19199 1.21551 1.20514 1.20452 0.96044 0.95383 0.92968 1.21080 1.01473 0.93419 0.98352 1.21381 0.98191 0.96360 0.98607 1.21277 1.00412 1.00073 0.94601 1.21285 1.00168 0.93223 1.00044 1.21111 0.99764 0.96628 0.98408 1.23700 0.90386 0.99881 0.94724 1.68459 1.08439 1.30511 1.09957 0.88439 0.90280 0.87316 0.77324 0.89781 0.89406 0.87045 0.87359 0.93594 0.86326 0.84174 0.83958 0.85059 0.88551 0.79891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.19 71.24 0.73 -0.12 16 2 C 0.07 1.33 6.79 42.55 0.29 1.62 16 3 C 0.06 1.04 10.88 84.68 0.92 1.96 16 4 N -0.45 -11.58 10.42 -183.29 -1.91 -13.49 16 5 C 0.05 1.49 6.79 42.54 0.29 1.78 16 6 C 0.13 3.92 6.02 71.24 0.43 4.35 16 7 O -0.36 -11.70 8.69 -51.36 -0.45 -12.14 16 8 C 0.47 18.64 7.71 71.23 0.55 19.19 16 9 O -0.51 -25.15 14.73 21.97 0.32 -24.83 16 10 C -0.09 -3.32 5.06 29.85 0.15 -3.17 16 11 C 0.08 3.72 1.69 -12.28 -0.02 3.70 16 12 H 0.03 1.76 6.95 -2.38 -0.02 1.74 16 13 C -0.50 -26.44 6.38 25.60 0.16 -26.28 16 14 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 15 C 0.03 1.43 5.45 84.65 0.46 1.89 16 16 N -0.91 -54.70 12.85 21.45 0.28 -54.42 16 17 Si 0.93 45.36 29.54 68.60 2.03 47.39 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 C -0.05 -2.06 4.77 -19.87 -0.09 -2.15 16 22 C -0.13 -4.70 8.86 22.27 0.20 -4.51 16 23 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 24 C -0.15 -4.39 10.05 22.27 0.22 -4.17 16 25 C -0.13 -4.39 10.05 22.27 0.22 -4.16 16 26 C -0.14 -5.83 9.67 22.27 0.22 -5.61 16 27 C 0.07 1.82 10.56 84.67 0.89 2.71 16 28 N -0.46 -10.86 10.42 -183.29 -1.91 -12.77 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.35 8.09 -2.39 -0.02 0.33 16 32 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.08 2.73 8.13 -2.39 -0.02 2.71 16 34 H 0.09 2.76 8.13 -2.39 -0.02 2.74 16 35 H 0.11 3.71 7.76 -2.39 -0.02 3.70 16 36 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 37 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 38 H 0.12 4.26 7.75 -2.92 -0.02 4.23 16 39 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 42 H 0.10 4.21 7.95 -2.91 -0.02 4.19 16 43 H 0.18 4.37 6.99 -2.91 -0.02 4.35 16 Total: -1.00 -72.36 373.47 5.22 -67.15 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 1.02 Total: 19.86 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.84 Total: -16.75 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.55 Total: -80.68 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.12 Total: -36.97 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.36 5.22 -67.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795986901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.550 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds