Wall clock time and date at job start Tue Mar 31 2020 15:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50690 * 119.99885 * 2 1 4 4 N 1.46498 * 109.47182 * 124.99993 * 3 2 1 5 5 C 1.34777 * 120.00134 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00181 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00036 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.46873 * 300.00093 * 7 5 4 9 9 C 1.47198 * 109.46962 * 60.00372 * 7 5 4 10 10 N 5.61742 * 155.51355 * 78.63606 * 2 1 3 11 11 C 1.50703 * 109.46984 * 180.02562 * 7 5 4 12 12 O 1.20754 * 120.00336 * 335.00004 * 11 7 5 13 13 C 1.50702 * 119.99436 * 154.99914 * 11 7 5 14 14 C 1.53005 * 109.46504 * 179.97438 * 13 11 7 15 15 H 1.08996 * 109.47499 * 305.00096 * 14 13 11 16 16 C 1.50701 * 109.46996 * 65.00547 * 14 13 11 17 17 H 1.08005 * 120.00108 * 29.58600 * 16 14 13 18 18 C 1.37874 * 119.99858 * 209.59305 * 16 14 13 19 19 N 1.31506 * 120.00296 * 4.94774 * 18 16 14 20 20 Si 1.86803 * 120.00008 * 184.94582 * 18 16 14 21 21 H 1.48503 * 109.47300 * 89.99634 * 20 18 16 22 22 H 1.48500 * 109.47488 * 209.99918 * 20 18 16 23 23 H 1.48505 * 109.47326 * 330.00243 * 20 18 16 24 24 C 1.50702 * 109.46825 * 185.00010 * 14 13 11 25 25 C 1.38237 * 119.99944 * 296.77701 * 24 14 13 26 26 C 1.38241 * 119.99704 * 179.78796 * 25 24 14 27 27 C 1.38230 * 119.99899 * 0.44383 * 26 25 24 28 28 C 1.38231 * 120.00225 * 359.81392 * 27 26 25 29 29 C 1.38238 * 119.99721 * 117.05602 * 24 14 13 30 30 H 1.08004 * 120.00152 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00299 * 0.02562 * 1 2 3 32 32 H 1.07995 * 119.99723 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47261 * 4.99934 * 3 2 1 34 34 H 1.09004 * 109.47363 * 245.00251 * 3 2 1 35 35 H 0.96998 * 120.00195 * 0.02562 * 4 3 2 36 36 H 1.08996 * 109.47627 * 299.99420 * 13 11 7 37 37 H 1.09004 * 109.47163 * 60.00420 * 13 11 7 38 38 H 0.97006 * 120.00454 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.00313 * 0.02562 * 25 24 14 40 40 H 1.08001 * 119.99856 * 180.27965 * 26 25 24 41 41 H 1.08004 * 120.00385 * 179.83475 * 27 26 25 42 42 H 1.08003 * 120.00676 * 179.97438 * 28 27 26 43 43 H 1.08000 * 120.00051 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7789 2.4086 1.3329 6 8 3.7151 3.3555 0.5777 7 6 4.7363 2.4359 2.4964 8 1 4.1787 2.3385 3.4280 9 6 5.6880 1.3195 2.3751 10 7 6.4222 0.4588 2.2827 11 6 5.4897 3.7411 2.4965 12 8 5.6339 4.3551 1.4668 13 6 6.0631 4.2800 3.7818 14 6 6.7735 5.6068 3.5064 15 1 7.5188 5.4644 2.7240 16 6 5.7649 6.6331 3.0586 17 1 4.7443 6.5752 3.4071 18 6 6.1450 7.6460 2.2039 19 7 7.3606 7.6617 1.7024 20 14 4.9333 8.9960 1.7581 21 1 5.0530 10.1102 2.7326 22 1 5.2318 9.4982 0.3929 23 1 3.5516 8.4530 1.7947 24 6 7.4512 6.0844 4.7649 25 6 6.6965 6.3990 5.8795 26 6 7.3186 6.8329 7.0353 27 6 8.6944 6.9608 7.0735 28 6 9.4486 6.6513 5.9572 29 6 8.8270 6.2132 4.8027 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 3.0451 0.5744 1.7351 36 1 5.2586 4.4404 4.4995 37 1 6.7767 3.5640 4.1897 38 1 7.6282 8.3745 1.1013 39 1 5.6214 6.3022 5.8487 40 1 6.7294 7.0744 7.9076 41 1 9.1803 7.3023 7.9756 42 1 10.5235 6.7516 5.9867 43 1 9.4162 5.9713 3.9305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796635511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:32 Heat of formation + Delta-G solvation = 6.567953 kcal Electronic energy + Delta-G solvation = -26653.696217 eV Core-core repulsion = 22858.032210 eV Total energy + Delta-G solvation = -3795.664007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43578 -38.69929 -38.00992 -36.61126 -35.91401 -34.05365 -33.12120 -31.74431 -31.21963 -30.01823 -28.82912 -26.48838 -25.44344 -22.93287 -21.66521 -21.18088 -20.58563 -20.33267 -19.25934 -18.28313 -16.94854 -16.72112 -16.42440 -15.90613 -15.56273 -15.27779 -14.75112 -14.36136 -14.22385 -14.11453 -13.88368 -13.77801 -13.56467 -13.42347 -12.90354 -12.88076 -12.58871 -12.53302 -12.34487 -12.08362 -11.97317 -11.68617 -11.62497 -11.49038 -10.86620 -10.75072 -10.56643 -10.27666 -10.24741 -10.08242 -9.84955 -9.45717 -9.21997 -9.14701 -8.80428 -8.34929 -8.05533 -7.63293 -5.95224 -3.96363 1.70558 2.21301 2.27614 2.28542 2.33596 2.62546 2.85529 3.14229 3.38914 3.45587 3.48136 3.87807 4.32114 4.43044 4.51667 4.57542 4.73740 4.75020 4.96015 5.27230 5.39964 5.47777 5.52384 5.65537 5.71500 5.82784 5.85234 6.04470 6.10347 6.11236 6.16462 6.26940 6.35220 6.40355 6.51868 6.79248 6.89685 7.02714 7.23747 7.28694 7.30253 7.41419 7.50568 7.85050 7.92667 8.02422 8.05963 8.25043 8.34954 9.04103 9.66782 11.14436 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.003571 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.403109 B = 7839.177334 C = 9200.930241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C 0.146 3.854 4 N -0.731 5.731 5 C 0.522 3.478 6 O -0.476 6.476 7 C -0.068 4.068 8 H 0.159 0.841 9 C 0.220 3.780 10 N -0.402 5.402 11 C 0.355 3.645 12 O -0.345 6.345 13 C -0.144 4.144 14 C 0.073 3.927 15 H 0.072 0.928 16 C -0.501 4.501 17 H 0.054 0.946 18 C 0.079 3.921 19 N -0.879 5.879 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.023 4.023 25 C -0.114 4.114 26 C -0.132 4.132 27 C -0.155 4.155 28 C -0.128 4.128 29 C -0.119 4.119 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -13.636 4.775 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.024 3.976 4 N -0.385 5.385 5 C 0.304 3.696 6 O -0.346 6.346 7 C -0.094 4.094 8 H 0.176 0.824 9 C -0.098 4.098 10 N -0.079 5.079 11 C 0.219 3.781 12 O -0.207 6.207 13 C -0.182 4.182 14 C 0.055 3.945 15 H 0.090 0.910 16 C -0.538 4.538 17 H 0.072 0.928 18 C -0.125 4.125 19 N -0.516 5.516 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.024 4.024 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.173 4.173 28 C -0.147 4.147 29 C -0.137 4.137 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.815 -13.717 3.297 16.128 hybrid contribution -0.959 0.769 0.209 1.247 sum -8.774 -12.948 3.507 16.029 Atomic orbital electron populations 1.23988 0.95753 1.02453 0.98187 1.23007 0.96243 0.98109 1.02028 1.20435 0.91789 0.95637 0.89787 1.45962 1.41511 1.19761 1.31278 1.19648 0.81105 0.83191 0.85664 1.90929 1.65578 1.34041 1.44032 1.19884 0.94051 0.93298 1.02198 0.82383 1.27748 0.94358 0.93517 0.94212 1.81201 1.08352 1.10835 1.07518 1.23749 0.78997 0.82759 0.92638 1.90602 1.42596 1.53460 1.34014 1.22162 1.00955 1.00392 0.94698 1.17897 0.96217 0.89509 0.90894 0.91035 1.20726 0.94738 1.10510 1.27818 0.92768 1.24818 0.94960 0.97838 0.94876 1.69891 1.18149 1.32449 1.31087 0.86695 0.81921 0.82373 0.77646 1.20885 1.21314 1.19824 1.20716 0.92599 0.93838 0.95222 1.20953 0.99604 1.00020 0.92625 1.20983 0.94534 1.01527 0.97996 1.20802 0.94262 1.04153 0.98065 1.20988 0.98764 1.00949 0.93953 1.21105 0.95021 1.00624 0.96990 0.87937 0.88019 0.86744 0.90594 0.90413 0.76585 0.89364 0.90868 0.93017 0.86700 0.87629 0.87815 0.87659 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 14.32 29.01 0.42 -0.59 16 2 C -0.18 -1.21 9.63 -36.03 -0.35 -1.56 16 3 C 0.15 1.39 6.11 -5.20 -0.03 1.36 16 4 N -0.73 -7.33 5.44 -61.47 -0.33 -7.67 16 5 C 0.52 7.37 7.08 -10.98 -0.08 7.30 16 6 O -0.48 -9.27 14.52 -18.21 -0.26 -9.54 16 7 C -0.07 -0.86 2.84 -95.71 -0.27 -1.14 16 8 H 0.16 1.18 8.14 -51.93 -0.42 0.76 16 9 C 0.22 2.91 14.39 -20.79 -0.30 2.61 16 10 N -0.40 -5.98 18.53 42.12 0.78 -5.20 16 11 C 0.36 6.39 5.89 -29.03 -0.17 6.22 16 12 O -0.34 -8.12 13.31 -17.76 -0.24 -8.35 16 13 C -0.14 -2.52 4.88 -27.88 -0.14 -2.66 16 14 C 0.07 1.67 1.69 -92.92 -0.16 1.51 16 15 H 0.07 1.88 6.95 -51.93 -0.36 1.52 16 16 C -0.50 -12.90 6.38 -34.44 -0.22 -13.12 16 17 H 0.05 1.38 7.82 -52.48 -0.41 0.97 16 18 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 19 N -0.88 -25.45 12.85 55.43 0.71 -24.74 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 25 C -0.11 -2.19 8.86 -39.58 -0.35 -2.55 16 26 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 27 C -0.15 -2.63 10.05 -39.59 -0.40 -3.03 16 28 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 29 C -0.12 -2.47 9.67 -39.58 -0.38 -2.85 16 30 H 0.10 0.48 8.06 -52.48 -0.42 0.06 16 31 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 32 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 2.84 8.33 -40.82 -0.34 2.50 16 36 H 0.09 1.33 7.76 -51.93 -0.40 0.93 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.11 2.08 7.75 -52.49 -0.41 1.67 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.10 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.11 2.39 7.95 -52.49 -0.42 1.97 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -34.51 382.84 -8.09 -42.59 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.67 Total: 3.03 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.82 Total: -12.82 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 1.16 Total: -37.61 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.50 Total: -17.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.51 -8.09 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796635511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.162 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds