Wall clock time and date at job start Tue Mar 31 2020 15:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50690 * 119.99885 * 2 1 4 4 N 1.46498 * 109.47182 * 124.99993 * 3 2 1 5 5 C 1.34777 * 120.00134 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00181 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00036 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.46873 * 300.00093 * 7 5 4 9 9 C 1.47198 * 109.46962 * 60.00372 * 7 5 4 10 10 N 5.61742 * 155.51355 * 78.63606 * 2 1 3 11 11 C 1.50703 * 109.46984 * 180.02562 * 7 5 4 12 12 O 1.20754 * 120.00336 * 335.00004 * 11 7 5 13 13 C 1.50702 * 119.99436 * 154.99914 * 11 7 5 14 14 C 1.53005 * 109.46504 * 179.97438 * 13 11 7 15 15 H 1.08996 * 109.47499 * 305.00096 * 14 13 11 16 16 C 1.50701 * 109.46996 * 65.00547 * 14 13 11 17 17 H 1.08005 * 120.00108 * 29.58600 * 16 14 13 18 18 C 1.37874 * 119.99858 * 209.59305 * 16 14 13 19 19 N 1.31506 * 120.00296 * 4.94774 * 18 16 14 20 20 Si 1.86803 * 120.00008 * 184.94582 * 18 16 14 21 21 H 1.48503 * 109.47300 * 89.99634 * 20 18 16 22 22 H 1.48500 * 109.47488 * 209.99918 * 20 18 16 23 23 H 1.48505 * 109.47326 * 330.00243 * 20 18 16 24 24 C 1.50702 * 109.46825 * 185.00010 * 14 13 11 25 25 C 1.38237 * 119.99944 * 296.77701 * 24 14 13 26 26 C 1.38241 * 119.99704 * 179.78796 * 25 24 14 27 27 C 1.38230 * 119.99899 * 0.44383 * 26 25 24 28 28 C 1.38231 * 120.00225 * 359.81392 * 27 26 25 29 29 C 1.38238 * 119.99721 * 117.05602 * 24 14 13 30 30 H 1.08004 * 120.00152 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00299 * 0.02562 * 1 2 3 32 32 H 1.07995 * 119.99723 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47261 * 4.99934 * 3 2 1 34 34 H 1.09004 * 109.47363 * 245.00251 * 3 2 1 35 35 H 0.96998 * 120.00195 * 0.02562 * 4 3 2 36 36 H 1.08996 * 109.47627 * 299.99420 * 13 11 7 37 37 H 1.09004 * 109.47163 * 60.00420 * 13 11 7 38 38 H 0.97006 * 120.00454 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.00313 * 0.02562 * 25 24 14 40 40 H 1.08001 * 119.99856 * 180.27965 * 26 25 24 41 41 H 1.08004 * 120.00385 * 179.83475 * 27 26 25 42 42 H 1.08003 * 120.00676 * 179.97438 * 28 27 26 43 43 H 1.08000 * 120.00051 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7789 2.4086 1.3329 6 8 3.7151 3.3555 0.5777 7 6 4.7363 2.4359 2.4964 8 1 4.1787 2.3385 3.4280 9 6 5.6880 1.3195 2.3751 10 7 6.4222 0.4588 2.2827 11 6 5.4897 3.7411 2.4965 12 8 5.6339 4.3551 1.4668 13 6 6.0631 4.2800 3.7818 14 6 6.7735 5.6068 3.5064 15 1 7.5188 5.4644 2.7240 16 6 5.7649 6.6331 3.0586 17 1 4.7443 6.5752 3.4071 18 6 6.1450 7.6460 2.2039 19 7 7.3606 7.6617 1.7024 20 14 4.9333 8.9960 1.7581 21 1 5.0530 10.1102 2.7326 22 1 5.2318 9.4982 0.3929 23 1 3.5516 8.4530 1.7947 24 6 7.4512 6.0844 4.7649 25 6 6.6965 6.3990 5.8795 26 6 7.3186 6.8329 7.0353 27 6 8.6944 6.9608 7.0735 28 6 9.4486 6.6513 5.9572 29 6 8.8270 6.2132 4.8027 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 3.0451 0.5744 1.7351 36 1 5.2586 4.4404 4.4995 37 1 6.7767 3.5640 4.1897 38 1 7.6282 8.3745 1.1013 39 1 5.6214 6.3022 5.8487 40 1 6.7294 7.0744 7.9076 41 1 9.1803 7.3023 7.9756 42 1 10.5235 6.7516 5.9867 43 1 9.4162 5.9713 3.9305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796635511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:32 Heat of formation + Delta-G solvation = -13.939477 kcal Electronic energy + Delta-G solvation = -26654.585486 eV Core-core repulsion = 22858.032210 eV Total energy + Delta-G solvation = -3796.553276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67695 -40.11874 -39.41086 -37.79135 -36.79946 -35.77900 -34.02781 -33.43292 -32.52469 -31.46198 -30.24250 -27.75178 -26.86022 -24.57730 -23.12024 -22.28340 -21.80404 -21.15822 -20.75660 -19.37713 -18.49145 -17.94699 -17.77537 -17.25044 -16.54403 -16.48688 -16.41484 -15.92054 -15.52467 -15.41107 -15.20373 -15.02170 -14.93416 -14.25025 -14.16943 -14.14501 -13.98705 -13.89484 -13.57566 -13.42695 -13.37250 -13.22359 -13.12053 -12.80665 -12.49007 -12.42426 -12.04301 -11.80250 -11.65945 -11.32480 -11.24303 -10.93930 -10.61577 -10.49528 -10.23195 -10.07076 -9.50569 -9.15392 -8.01862 -6.04855 0.81497 0.86849 0.96064 1.07248 1.23500 1.38779 1.42212 1.48386 1.52163 1.64518 2.19385 2.48857 2.75496 3.05885 3.21893 3.39441 3.57439 3.86428 4.08604 4.17144 4.28682 4.37426 4.41158 4.46832 4.56500 4.60473 4.71828 4.76784 4.82016 4.97641 5.01274 5.05861 5.25865 5.32413 5.41746 5.55872 5.65806 5.70267 5.78468 5.81985 5.87541 5.99444 6.17251 6.20170 6.38083 6.44440 6.49908 6.84496 7.05297 7.11324 7.59243 9.07359 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.003571 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.403109 B = 7839.177334 C = 9200.930241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.183 4.183 3 C 0.143 3.857 4 N -0.708 5.708 5 C 0.521 3.479 6 O -0.538 6.538 7 C -0.052 4.052 8 H 0.223 0.777 9 C 0.240 3.760 10 N -0.426 5.426 11 C 0.356 3.644 12 O -0.412 6.412 13 C -0.144 4.144 14 C 0.073 3.927 15 H 0.020 0.980 16 C -0.486 4.486 17 H 0.057 0.943 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.269 1.269 24 C -0.046 4.046 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.149 4.149 28 C -0.132 4.132 29 C -0.147 4.147 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.418 0.582 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.252 0.748 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.127 0.873 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.972 -15.184 8.319 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.201 4.201 3 C 0.021 3.979 4 N -0.362 5.362 5 C 0.303 3.697 6 O -0.413 6.413 7 C -0.077 4.077 8 H 0.239 0.761 9 C -0.079 4.079 10 N -0.103 5.103 11 C 0.224 3.776 12 O -0.278 6.278 13 C -0.181 4.181 14 C 0.054 3.946 15 H 0.039 0.961 16 C -0.524 4.524 17 H 0.075 0.925 18 C -0.177 4.177 19 N -0.558 5.558 20 Si 0.758 3.242 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.193 1.193 24 C -0.046 4.046 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.167 4.167 28 C -0.150 4.150 29 C -0.165 4.165 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.145 0.855 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.740 -15.339 6.896 19.434 hybrid contribution -0.382 1.169 -0.816 1.476 sum -10.122 -14.169 6.080 18.444 Atomic orbital electron populations 1.24189 0.95458 1.03389 0.96128 1.22883 0.96421 0.97002 1.03788 1.20480 0.91472 0.97222 0.88764 1.45831 1.40083 1.19009 1.31273 1.19865 0.81316 0.83174 0.85295 1.90922 1.67623 1.36550 1.46155 1.19766 0.93410 0.89858 1.04653 0.76118 1.27633 0.93828 0.93077 0.93324 1.81237 1.08682 1.11854 1.08505 1.24272 0.77724 0.83962 0.91652 1.90609 1.45068 1.56115 1.36014 1.22160 1.02183 0.98296 0.95458 1.17708 0.94805 0.91550 0.90499 0.96127 1.21094 0.95304 1.09966 1.26051 0.92466 1.25490 0.96065 1.00162 0.95934 1.70049 1.19856 1.33126 1.32788 0.85980 0.80520 0.80787 0.76939 1.19969 1.22440 1.19312 1.20565 0.93007 0.95554 0.95513 1.21105 1.00089 1.00270 0.92632 1.21400 0.95061 0.99671 0.98279 1.21254 0.94373 1.02380 0.98655 1.21257 1.00174 1.00137 0.93400 1.21106 0.95198 1.02617 0.97576 0.85949 0.88133 0.85370 0.91336 0.92189 0.74443 0.85904 0.88277 0.93929 0.85602 0.83964 0.84132 0.85522 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 14.32 67.78 0.97 -0.52 16 2 C -0.18 -2.17 9.63 25.64 0.25 -1.92 16 3 C 0.14 2.66 6.11 85.63 0.52 3.18 16 4 N -0.71 -13.15 5.44 -466.79 -2.54 -15.69 16 5 C 0.52 14.38 7.08 87.66 0.62 15.00 16 6 O -0.54 -21.73 14.52 19.68 0.29 -21.44 16 7 C -0.05 -1.21 2.84 -14.09 -0.04 -1.25 16 8 H 0.22 2.22 8.14 -2.38 -0.02 2.20 16 9 C 0.24 5.91 14.39 89.45 1.29 7.19 16 10 N -0.43 -12.08 18.53 19.99 0.37 -11.71 16 11 C 0.36 12.78 5.89 29.10 0.17 12.95 16 12 O -0.41 -20.37 13.31 21.29 0.28 -20.08 16 13 C -0.14 -4.87 4.88 29.85 0.15 -4.73 16 14 C 0.07 3.41 1.69 -12.28 -0.02 3.39 16 15 H 0.02 1.16 6.95 -2.39 -0.02 1.14 16 16 C -0.49 -25.61 6.38 25.60 0.16 -25.45 16 17 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 18 C 0.02 1.27 5.45 84.66 0.46 1.73 16 19 N -0.92 -56.41 12.85 21.44 0.28 -56.14 16 20 Si 0.93 46.32 29.54 68.60 2.03 48.35 16 21 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 23 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 24 C -0.05 -1.96 4.77 -19.86 -0.09 -2.05 16 25 C -0.12 -4.46 8.86 22.27 0.20 -4.26 16 26 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 27 C -0.15 -4.51 10.05 22.27 0.22 -4.28 16 28 C -0.13 -4.59 10.05 22.27 0.22 -4.37 16 29 C -0.15 -6.21 9.67 22.27 0.22 -6.00 16 30 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 31 H 0.10 1.00 7.84 -2.91 -0.02 0.98 16 32 H 0.13 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.42 4.75 8.33 -92.71 -0.77 3.98 16 36 H 0.12 3.31 7.76 -2.39 -0.02 3.29 16 37 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 39 H 0.13 4.18 7.75 -2.91 -0.02 4.16 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.09 4.08 7.95 -2.91 -0.02 4.06 16 Total: -1.00 -82.63 382.84 6.48 -76.15 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.26 Total: 15.56 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.52 Total: -15.01 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -1.89 Total: -83.53 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: 0.57 Total: -41.53 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -82.63 6.48 -76.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796635511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.213 kcal (2) G-P(sol) polarization free energy of solvation -82.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds