Wall clock time and date at job start Tue Mar 31 2020 15:12:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50696 * 120.00230 * 2 1
4 4 N 1.46502 * 109.47273 * 124.99845 * 3 2 1
5 5 C 1.46496 * 120.00208 * 269.99993 * 4 3 2
6 6 C 1.50695 * 109.47138 * 270.00307 * 5 4 3
7 7 H 1.08000 * 120.00211 * 359.97438 * 6 5 4
8 8 C 1.37883 * 119.99749 * 180.02562 * 6 5 4
9 9 N 1.31519 * 119.99752 * 179.97438 * 8 6 5
10 10 Si 1.86797 * 120.00270 * 359.97438 * 8 6 5
11 11 H 1.48503 * 109.47124 * 89.99798 * 10 8 6
12 12 H 1.48498 * 109.47290 * 210.00173 * 10 8 6
13 13 H 1.48504 * 109.46948 * 329.99918 * 10 8 6
14 14 C 1.34781 * 119.99997 * 90.00044 * 4 3 2
15 15 O 1.21274 * 120.00182 * 180.27469 * 14 4 3
16 16 C 1.50706 * 119.99720 * 0.02562 * 14 4 3
17 17 H 1.09000 * 115.56223 * 42.10799 * 16 14 4
18 18 C 1.53137 * 117.51200 * 187.85491 * 16 14 4
19 19 C 1.52338 * 117.51256 * 256.28204 * 16 14 4
20 20 C 1.50543 * 121.91373 * 3.80461 * 19 16 14
21 21 C 1.37679 * 133.32126 * 323.63024 * 20 19 16
22 22 C 1.38371 * 119.99276 * 180.02562 * 21 20 19
23 23 C 1.38307 * 119.82826 * 359.97438 * 22 21 20
24 24 C 1.37930 * 120.34863 * 0.02562 * 23 22 21
25 25 C 1.39088 * 105.97551 * 143.65651 * 20 19 16
26 26 N 1.39614 * 110.25129 * 0.02562 * 25 20 19
27 27 C 1.34604 * 112.21717 * 0.02562 * 26 25 20
28 28 O 1.21284 * 126.61991 * 180.02562 * 27 26 25
29 29 H 1.07999 * 119.99774 * 0.02562 * 1 2 3
30 30 H 1.08001 * 120.00008 * 179.97438 * 1 2 3
31 31 H 1.08011 * 120.00088 * 180.02562 * 2 1 3
32 32 H 1.08997 * 109.47184 * 4.99834 * 3 2 1
33 33 H 1.09005 * 109.47258 * 245.00040 * 3 2 1
34 34 H 1.09006 * 109.46629 * 29.99872 * 5 4 3
35 35 H 1.08996 * 109.47271 * 149.99538 * 5 4 3
36 36 H 0.97003 * 119.99608 * 179.97438 * 9 8 6
37 37 H 1.09005 * 117.51473 * 214.87836 * 18 16 14
38 38 H 1.08996 * 117.51753 * 359.97438 * 18 16 14
39 39 H 1.08004 * 120.00410 * 0.02562 * 21 20 19
40 40 H 1.08001 * 120.08928 * 179.97438 * 22 21 20
41 41 H 1.07995 * 119.82297 * 180.02562 * 23 22 21
42 42 H 1.08006 * 119.90557 * 179.97438 * 24 23 22
43 43 H 0.97000 * 123.89469 * 179.97438 * 26 25 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3050 0.0000
4 7 2.9938 1.3318 1.1315
5 6 2.5589 1.8649 2.4248
6 6 2.8443 3.3436 2.4803
7 1 3.3040 3.8369 1.6367
8 6 2.5194 4.0665 3.6086
9 7 2.7689 5.3569 3.6572
10 14 1.7249 3.2132 5.0680
11 1 2.7810 2.7220 5.9893
12 1 0.8489 4.1734 5.7862
13 1 0.9132 2.0657 4.5888
14 6 4.2497 0.8661 0.9824
15 8 5.0183 0.8836 1.9204
16 6 4.6973 0.3182 -0.3483
17 1 4.3788 0.8867 -1.2221
18 6 6.0676 -0.3628 -0.4082
19 6 4.7945 -1.1955 -0.4894
20 6 4.3801 -2.1263 0.6188
21 6 4.4731 -2.0618 1.9910
22 6 3.9905 -3.1011 2.7666
23 6 3.4151 -4.2027 2.1598
24 6 3.3201 -4.2710 0.7854
25 6 3.8040 -3.2291 -0.0028
26 7 3.8241 -3.0674 -1.3894
27 6 4.3887 -1.9024 -1.7579
28 8 4.5401 -1.4984 -2.8914
29 1 -0.5400 0.9353 -0.0004
30 1 -0.5400 -0.9353 -0.0004
31 1 1.8501 -0.9354 -0.0004
32 1 1.3587 2.1316 0.0895
33 1 2.6213 1.4025 -0.9314
34 1 1.4888 1.6966 2.5458
35 1 3.0989 1.3603 3.2259
36 1 2.5400 5.8655 4.4508
37 1 6.6500 -0.2428 -1.3218
38 1 6.6452 -0.4140 0.5146
39 1 4.9227 -1.2001 2.4619
40 1 4.0631 -3.0523 3.8431
41 1 3.0381 -5.0136 2.7652
42 1 2.8697 -5.1348 0.3191
43 1 3.4725 -3.7198 -2.0153
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000820230065.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:12:32
Heat of formation + Delta-G solvation = 30.341974 kcal
Electronic energy + Delta-G solvation = -28395.597399 eV
Core-core repulsion = 24600.964311 eV
Total energy + Delta-G solvation = -3794.633088 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.92225 -39.34563 -38.54938 -36.38252 -35.80890 -35.46424 -33.19095 -32.14522
-30.93083 -29.36623 -28.58904 -26.17529 -25.62704 -24.21719 -22.71685 -21.72089
-21.59255 -20.15279 -20.01510 -18.44805 -17.78553 -17.35767 -16.92261 -16.55956
-15.99862 -15.72395 -15.49470 -15.22147 -14.66850 -14.36390 -14.33257 -14.08858
-13.89552 -13.34274 -13.15361 -12.94217 -12.88660 -12.44962 -12.19994 -12.00556
-11.78923 -11.70273 -11.36091 -11.30850 -11.07725 -10.98391 -10.94515 -10.62093
-10.52291 -10.20297 -10.16948 -9.58829 -9.28280 -9.18153 -8.86510 -8.61179
-8.16397 -7.81871 -6.10936 -4.10059 0.94388 1.21965 2.12779 2.36301
2.70302 3.08503 3.27065 3.33138 3.34637 3.58644 3.65060 3.99121
4.02212 4.24465 4.37198 4.38059 4.74874 4.79168 4.97162 4.97897
5.15882 5.18084 5.22855 5.34344 5.36227 5.40859 5.44756 5.62521
5.65685 5.90151 5.94271 5.97157 5.99803 6.12592 6.28568 6.43553
6.48846 6.60084 6.65843 6.72708 6.83838 6.88827 6.89554 7.27738
7.57430 7.77456 8.13184 8.42985 8.82022 8.93388 9.48931 11.02321
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.013649 B = 0.004643 C = 0.004332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2051.001762 B = 6029.506740 C = 6462.039420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.165 4.165
3 C 0.135 3.865
4 N -0.577 5.577
5 C 0.219 3.781
6 C -0.530 4.530
7 H 0.076 0.924
8 C 0.074 3.926
9 N -0.896 5.896
10 Si 0.873 3.127
11 H -0.273 1.273
12 H -0.285 1.285
13 H -0.265 1.265
14 C 0.543 3.457
15 O -0.531 6.531
16 C -0.130 4.130
17 H 0.136 0.864
18 C -0.092 4.092
19 C -0.131 4.131
20 C -0.099 4.099
21 C -0.060 4.060
22 C -0.136 4.136
23 C -0.087 4.087
24 C -0.144 4.144
25 C 0.139 3.861
26 N -0.657 5.657
27 C 0.565 3.435
28 O -0.498 6.498
29 H 0.100 0.900
30 H 0.093 0.907
31 H 0.102 0.898
32 H 0.091 0.909
33 H 0.077 0.923
34 H 0.031 0.969
35 H 0.037 0.963
36 H 0.265 0.735
37 H 0.116 0.884
38 H 0.124 0.876
39 H 0.146 0.854
40 H 0.130 0.870
41 H 0.129 0.871
42 H 0.124 0.876
43 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.471 -20.014 -7.580 21.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.184 4.184
3 C 0.011 3.989
4 N -0.306 5.306
5 C 0.099 3.901
6 C -0.568 4.568
7 H 0.094 0.906
8 C -0.128 4.128
9 N -0.534 5.534
10 Si 0.700 3.300
11 H -0.199 1.199
12 H -0.211 1.211
13 H -0.190 1.190
14 C 0.329 3.671
15 O -0.409 6.409
16 C -0.151 4.151
17 H 0.153 0.847
18 C -0.130 4.130
19 C -0.135 4.135
20 C -0.102 4.102
21 C -0.078 4.078
22 C -0.155 4.155
23 C -0.105 4.105
24 C -0.165 4.165
25 C 0.043 3.957
26 N -0.300 5.300
27 C 0.353 3.647
28 O -0.372 6.372
29 H 0.119 0.881
30 H 0.111 0.889
31 H 0.120 0.880
32 H 0.110 0.890
33 H 0.096 0.904
34 H 0.049 0.951
35 H 0.055 0.945
36 H 0.075 0.925
37 H 0.135 0.865
38 H 0.142 0.858
39 H 0.164 0.836
40 H 0.148 0.852
41 H 0.147 0.853
42 H 0.142 0.858
43 H 0.252 0.748
Dipole moment (debyes) X Y Z Total
from point charges 0.034 -19.474 -7.582 20.898
hybrid contribution -0.871 -0.717 0.387 1.192
sum -0.837 -20.191 -7.195 21.451
Atomic orbital electron populations
1.23812 0.95768 1.01756 1.00766 1.23403 0.96348 0.98955 0.99688
1.20645 0.93132 0.95426 0.89662 1.47797 1.10222 1.59487 1.13072
1.19680 0.94997 0.95177 0.80278 1.21315 1.41301 0.91049 1.03160
0.90640 1.24837 0.95227 0.94700 0.98083 1.69897 1.47657 1.06602
1.29269 0.86890 0.79926 0.79745 0.83413 1.19851 1.21057 1.19011
1.19082 0.82271 0.78192 0.87603 1.90628 1.52610 1.56662 1.40981
1.22379 1.02418 0.90247 1.00080 0.84681 1.22991 0.88584 0.95846
1.05539 1.20125 1.07704 0.92361 0.93309 1.18916 1.03724 0.94406
0.93169 1.20852 0.96564 0.99152 0.91273 1.21127 1.00315 0.93845
1.00225 1.20875 0.98050 0.98210 0.93403 1.20264 1.04934 0.97888
0.93370 1.18143 0.98968 0.96153 0.82452 1.43507 1.58994 1.21393
1.06116 1.19345 0.76036 0.80591 0.88716 1.90793 1.55042 1.69373
1.22018 0.88146 0.88860 0.88044 0.89022 0.90447 0.95136 0.94480
0.92535 0.86538 0.85768 0.83598 0.85249 0.85335 0.85828 0.74818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.37 14.32 29.01 0.42 -1.96 16
2 C -0.16 -2.39 9.85 -36.03 -0.35 -2.75 16
3 C 0.13 2.21 5.67 -5.19 -0.03 2.18 16
4 N -0.58 -11.54 2.44 -176.44 -0.43 -11.97 16
5 C 0.22 5.20 4.23 -5.20 -0.02 5.18 16
6 C -0.53 -14.86 9.94 -34.44 -0.34 -15.20 16
7 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16
8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
9 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16
10 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16
11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
13 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16
14 C 0.54 10.50 6.14 -10.98 -0.07 10.43 16
15 O -0.53 -11.83 13.79 5.56 0.08 -11.75 16
16 C -0.13 -1.98 4.98 -92.04 -0.46 -2.44 16
17 H 0.14 1.92 6.76 -51.93 -0.35 1.57 16
18 C -0.09 -1.22 9.79 -27.00 -0.26 -1.49 16
19 C -0.13 -1.80 2.41 -157.52 -0.38 -2.19 16
20 C -0.10 -1.35 5.57 -104.59 -0.58 -1.93 16
21 C -0.06 -0.85 9.26 -39.74 -0.37 -1.22 16
22 C -0.14 -1.58 10.07 -39.51 -0.40 -1.98 16
23 C -0.09 -0.83 10.02 -39.67 -0.40 -1.23 16
24 C -0.14 -1.37 10.07 -39.29 -0.40 -1.77 16
25 C 0.14 1.60 7.12 -83.60 -0.59 1.01 16
26 N -0.66 -7.07 5.90 -9.79 -0.06 -7.13 16
27 C 0.57 7.58 8.47 -11.02 -0.09 7.49 16
28 O -0.50 -7.79 18.03 5.55 0.10 -7.69 16
29 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16
30 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16
31 H 0.10 1.50 7.90 -52.48 -0.41 1.09 16
32 H 0.09 1.54 7.72 -51.93 -0.40 1.14 16
33 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16
34 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16
35 H 0.04 0.93 6.84 -51.93 -0.36 0.57 16
36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
37 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16
38 H 0.12 1.69 7.69 -51.93 -0.40 1.29 16
39 H 0.15 2.40 5.70 -52.48 -0.30 2.10 16
40 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16
41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16
42 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16
43 H 0.41 3.29 8.96 -40.82 -0.37 2.93 16
LS Contribution 365.14 15.07 5.50 5.50
Total: -1.00 -33.60 365.14 -8.53 -42.13
By element:
Atomic # 1 Polarization: 12.12 SS G_CDS: -5.39 Total: 6.73 kcal
Atomic # 6 Polarization: -1.42 SS G_CDS: -4.43 Total: -5.85 kcal
Atomic # 7 Polarization: -45.86 SS G_CDS: 0.29 Total: -45.57 kcal
Atomic # 8 Polarization: -19.62 SS G_CDS: 0.18 Total: -19.44 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -33.60 -8.53 -42.13 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000820230065.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.467 kcal
(2) G-P(sol) polarization free energy of solvation -33.600 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.867 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.342 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds