Wall clock time and date at job start Tue Mar 31 2020 15:12:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50696 * 120.00230 * 2 1
4 4 N 1.46502 * 109.47273 * 124.99845 * 3 2 1
5 5 C 1.46496 * 120.00208 * 269.99993 * 4 3 2
6 6 C 1.50695 * 109.47138 * 270.00307 * 5 4 3
7 7 H 1.08000 * 120.00211 * 359.97438 * 6 5 4
8 8 C 1.37883 * 119.99749 * 180.02562 * 6 5 4
9 9 N 1.31519 * 119.99752 * 179.97438 * 8 6 5
10 10 Si 1.86797 * 120.00270 * 359.97438 * 8 6 5
11 11 H 1.48503 * 109.47124 * 89.99798 * 10 8 6
12 12 H 1.48498 * 109.47290 * 210.00173 * 10 8 6
13 13 H 1.48504 * 109.46948 * 329.99918 * 10 8 6
14 14 C 1.34781 * 119.99997 * 90.00044 * 4 3 2
15 15 O 1.21274 * 120.00182 * 180.27469 * 14 4 3
16 16 C 1.50706 * 119.99720 * 0.02562 * 14 4 3
17 17 H 1.09000 * 115.56223 * 42.10799 * 16 14 4
18 18 C 1.53137 * 117.51200 * 187.85491 * 16 14 4
19 19 C 1.52338 * 117.51256 * 256.28204 * 16 14 4
20 20 C 1.50543 * 121.91373 * 3.80461 * 19 16 14
21 21 C 1.37679 * 133.32126 * 323.63024 * 20 19 16
22 22 C 1.38371 * 119.99276 * 180.02562 * 21 20 19
23 23 C 1.38307 * 119.82826 * 359.97438 * 22 21 20
24 24 C 1.37930 * 120.34863 * 0.02562 * 23 22 21
25 25 C 1.39088 * 105.97551 * 143.65651 * 20 19 16
26 26 N 1.39614 * 110.25129 * 0.02562 * 25 20 19
27 27 C 1.34604 * 112.21717 * 0.02562 * 26 25 20
28 28 O 1.21284 * 126.61991 * 180.02562 * 27 26 25
29 29 H 1.07999 * 119.99774 * 0.02562 * 1 2 3
30 30 H 1.08001 * 120.00008 * 179.97438 * 1 2 3
31 31 H 1.08011 * 120.00088 * 180.02562 * 2 1 3
32 32 H 1.08997 * 109.47184 * 4.99834 * 3 2 1
33 33 H 1.09005 * 109.47258 * 245.00040 * 3 2 1
34 34 H 1.09006 * 109.46629 * 29.99872 * 5 4 3
35 35 H 1.08996 * 109.47271 * 149.99538 * 5 4 3
36 36 H 0.97003 * 119.99608 * 179.97438 * 9 8 6
37 37 H 1.09005 * 117.51473 * 214.87836 * 18 16 14
38 38 H 1.08996 * 117.51753 * 359.97438 * 18 16 14
39 39 H 1.08004 * 120.00410 * 0.02562 * 21 20 19
40 40 H 1.08001 * 120.08928 * 179.97438 * 22 21 20
41 41 H 1.07995 * 119.82297 * 180.02562 * 23 22 21
42 42 H 1.08006 * 119.90557 * 179.97438 * 24 23 22
43 43 H 0.97000 * 123.89469 * 179.97438 * 26 25 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3050 0.0000
4 7 2.9938 1.3318 1.1315
5 6 2.5589 1.8649 2.4248
6 6 2.8443 3.3436 2.4803
7 1 3.3040 3.8369 1.6367
8 6 2.5194 4.0665 3.6086
9 7 2.7689 5.3569 3.6572
10 14 1.7249 3.2132 5.0680
11 1 2.7810 2.7220 5.9893
12 1 0.8489 4.1734 5.7862
13 1 0.9132 2.0657 4.5888
14 6 4.2497 0.8661 0.9824
15 8 5.0183 0.8836 1.9204
16 6 4.6973 0.3182 -0.3483
17 1 4.3788 0.8867 -1.2221
18 6 6.0676 -0.3628 -0.4082
19 6 4.7945 -1.1955 -0.4894
20 6 4.3801 -2.1263 0.6188
21 6 4.4731 -2.0618 1.9910
22 6 3.9905 -3.1011 2.7666
23 6 3.4151 -4.2027 2.1598
24 6 3.3201 -4.2710 0.7854
25 6 3.8040 -3.2291 -0.0028
26 7 3.8241 -3.0674 -1.3894
27 6 4.3887 -1.9024 -1.7579
28 8 4.5401 -1.4984 -2.8914
29 1 -0.5400 0.9353 -0.0004
30 1 -0.5400 -0.9353 -0.0004
31 1 1.8501 -0.9354 -0.0004
32 1 1.3587 2.1316 0.0895
33 1 2.6213 1.4025 -0.9314
34 1 1.4888 1.6966 2.5458
35 1 3.0989 1.3603 3.2259
36 1 2.5400 5.8655 4.4508
37 1 6.6500 -0.2428 -1.3218
38 1 6.6452 -0.4140 0.5146
39 1 4.9227 -1.2001 2.4619
40 1 4.0631 -3.0523 3.8431
41 1 3.0381 -5.0136 2.7652
42 1 2.8697 -5.1348 0.3191
43 1 3.4725 -3.7198 -2.0153
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000820230065.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:12:31
Heat of formation + Delta-G solvation = 9.050288 kcal
Electronic energy + Delta-G solvation = -28396.520675 eV
Core-core repulsion = 24600.964311 eV
Total energy + Delta-G solvation = -3795.556365 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.94330 -40.78702 -39.52282 -37.67901 -37.02804 -36.57837 -35.03618 -33.80314
-31.83823 -30.51304 -30.20492 -27.30464 -26.94199 -25.79490 -23.60769 -23.34049
-22.59202 -21.25003 -21.16257 -19.75208 -19.10349 -18.80896 -18.47962 -17.72434
-17.44620 -16.82184 -16.54957 -16.45958 -16.21433 -15.79568 -15.40009 -15.26228
-15.02126 -14.75986 -14.41086 -14.23615 -14.09627 -14.01694 -13.58597 -13.35568
-13.07978 -13.06060 -12.91778 -12.54182 -12.40522 -12.28056 -12.14610 -11.96890
-11.90041 -11.74335 -11.60745 -11.31470 -10.82948 -10.75197 -10.39112 -9.77472
-9.48604 -9.05973 -8.33472 -6.38771 -0.00588 0.34237 1.09346 1.24561
1.33530 1.36258 1.45152 1.63052 1.86435 2.23347 2.31062 2.65852
2.91320 2.94212 3.00894 3.20218 3.30674 3.58563 3.69879 3.95423
4.02213 4.13860 4.16951 4.24053 4.39830 4.42019 4.52849 4.56667
4.63888 4.73168 4.79729 4.83576 4.93302 5.00329 5.05452 5.12326
5.41270 5.43673 5.48562 5.53546 5.60318 5.64910 5.72333 5.84769
6.02523 6.22944 6.58189 6.63010 6.85323 7.18989 7.33166 8.83421
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.013649 B = 0.004643 C = 0.004332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2051.001762 B = 6029.506740 C = 6462.039420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.180 4.180
3 C 0.133 3.867
4 N -0.585 5.585
5 C 0.233 3.767
6 C -0.536 4.536
7 H 0.029 0.971
8 C 0.014 3.986
9 N -0.944 5.944
10 Si 0.944 3.056
11 H -0.273 1.273
12 H -0.276 1.276
13 H -0.240 1.240
14 C 0.540 3.460
15 O -0.570 6.570
16 C -0.141 4.141
17 H 0.145 0.855
18 C -0.086 4.086
19 C -0.122 4.122
20 C -0.122 4.122
21 C -0.085 4.085
22 C -0.143 4.143
23 C -0.077 4.077
24 C -0.129 4.129
25 C 0.135 3.865
26 N -0.639 5.639
27 C 0.569 3.431
28 O -0.522 6.522
29 H 0.104 0.896
30 H 0.118 0.882
31 H 0.101 0.899
32 H 0.082 0.918
33 H 0.090 0.910
34 H 0.044 0.956
35 H 0.023 0.977
36 H 0.268 0.732
37 H 0.138 0.862
38 H 0.115 0.885
39 H 0.111 0.889
40 H 0.138 0.862
41 H 0.166 0.834
42 H 0.162 0.838
43 H 0.430 0.570
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.581 -24.001 -7.772 25.360
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.199 4.199
3 C 0.010 3.990
4 N -0.314 5.314
5 C 0.111 3.889
6 C -0.574 4.574
7 H 0.048 0.952
8 C -0.184 4.184
9 N -0.584 5.584
10 Si 0.767 3.233
11 H -0.198 1.198
12 H -0.201 1.201
13 H -0.163 1.163
14 C 0.328 3.672
15 O -0.450 6.450
16 C -0.163 4.163
17 H 0.162 0.838
18 C -0.124 4.124
19 C -0.126 4.126
20 C -0.125 4.125
21 C -0.104 4.104
22 C -0.162 4.162
23 C -0.095 4.095
24 C -0.149 4.149
25 C 0.039 3.961
26 N -0.283 5.283
27 C 0.356 3.644
28 O -0.399 6.399
29 H 0.122 0.878
30 H 0.136 0.864
31 H 0.119 0.881
32 H 0.101 0.899
33 H 0.108 0.892
34 H 0.062 0.938
35 H 0.041 0.959
36 H 0.077 0.923
37 H 0.156 0.844
38 H 0.133 0.867
39 H 0.129 0.871
40 H 0.156 0.844
41 H 0.183 0.817
42 H 0.179 0.821
43 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges -2.102 -23.507 -7.814 24.860
hybrid contribution -0.190 0.522 0.432 0.704
sum -2.292 -22.985 -7.382 24.250
Atomic orbital electron populations
1.24057 0.95128 1.03120 0.97770 1.23165 0.96781 0.97586 1.02378
1.20796 0.92719 0.96585 0.88853 1.47824 1.11333 1.59371 1.12823
1.19278 0.95342 0.92146 0.82173 1.21532 1.40664 0.93379 1.01867
0.95225 1.25804 0.95852 0.95305 1.01426 1.70052 1.49328 1.08510
1.30516 0.85770 0.79182 0.79388 0.79006 1.19803 1.20081 1.16273
1.19673 0.81547 0.77306 0.88655 1.90598 1.53585 1.58086 1.42736
1.22165 1.04379 0.91971 0.97744 0.83794 1.23078 0.88208 0.94993
1.06095 1.20176 1.07031 0.91156 0.94265 1.18932 1.05154 0.95443
0.92943 1.20701 0.98437 0.99309 0.91951 1.21341 1.00181 0.93934
1.00720 1.21285 0.96391 0.97989 0.93854 1.20713 1.03053 0.97951
0.93208 1.18276 0.99170 0.96172 0.82482 1.43271 1.58010 1.20785
1.06259 1.19170 0.76086 0.81215 0.87918 1.90784 1.56246 1.70162
1.22677 0.87807 0.86379 0.88072 0.89943 0.89165 0.93780 0.95857
0.92263 0.84373 0.86694 0.87057 0.84375 0.81700 0.82068 0.72861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.76 14.32 67.78 0.97 -2.79 16
2 C -0.18 -4.95 9.85 25.65 0.25 -4.70 16
3 C 0.13 4.37 5.67 85.63 0.49 4.86 16
4 N -0.58 -24.15 2.44 -830.51 -2.03 -26.17 16
5 C 0.23 11.28 4.23 85.63 0.36 11.65 16
6 C -0.54 -31.38 9.94 25.60 0.25 -31.13 16
7 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16
8 C 0.01 0.84 5.47 84.66 0.46 1.30 16
9 N -0.94 -59.50 13.96 21.45 0.30 -59.20 16
10 Si 0.94 43.98 27.47 68.60 1.88 45.87 16
11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16
12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
13 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16
14 C 0.54 21.90 6.14 87.66 0.54 22.44 16
15 O -0.57 -27.05 13.79 -3.01 -0.04 -27.09 16
16 C -0.14 -4.44 4.98 -11.71 -0.06 -4.50 16
17 H 0.14 4.18 6.76 -2.39 -0.02 4.17 16
18 C -0.09 -2.35 9.79 30.42 0.30 -2.05 16
19 C -0.12 -3.33 2.41 -54.14 -0.13 -3.46 16
20 C -0.12 -3.22 5.57 -19.84 -0.11 -3.33 16
21 C -0.09 -2.43 9.26 22.17 0.21 -2.23 16
22 C -0.14 -3.09 10.07 22.32 0.22 -2.86 16
23 C -0.08 -1.16 10.02 22.21 0.22 -0.94 16
24 C -0.13 -1.88 10.07 22.46 0.23 -1.65 16
25 C 0.14 2.73 7.12 38.37 0.27 3.00 16
26 N -0.64 -11.98 5.90 -303.38 -1.79 -13.77 16
27 C 0.57 14.39 8.47 87.71 0.74 15.13 16
28 O -0.52 -15.66 18.03 -3.04 -0.05 -15.71 16
29 H 0.10 2.33 7.84 -2.91 -0.02 2.31 16
30 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16
31 H 0.10 2.82 7.90 -2.90 -0.02 2.80 16
32 H 0.08 2.82 7.72 -2.39 -0.02 2.80 16
33 H 0.09 2.67 6.13 -2.38 -0.01 2.65 16
34 H 0.04 2.01 7.13 -2.38 -0.02 2.00 16
35 H 0.02 1.20 6.84 -2.39 -0.02 1.18 16
36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16
37 H 0.14 3.08 8.14 -2.38 -0.02 3.06 16
38 H 0.11 3.33 7.69 -2.39 -0.02 3.31 16
39 H 0.11 3.94 5.70 -2.91 -0.02 3.92 16
40 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16
41 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16
42 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16
43 H 0.43 5.32 8.96 -92.71 -0.83 4.49 16
Total: -1.00 -77.26 365.14 3.66 -73.61
By element:
Atomic # 1 Polarization: 23.59 SS G_CDS: 0.16 Total: 23.75 kcal
Atomic # 6 Polarization: -6.49 SS G_CDS: 5.22 Total: -1.27 kcal
Atomic # 7 Polarization: -95.63 SS G_CDS: -3.52 Total: -99.15 kcal
Atomic # 8 Polarization: -42.71 SS G_CDS: -0.10 Total: -42.81 kcal
Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal
Total: -77.26 3.66 -73.61 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000820230065.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.657 kcal
(2) G-P(sol) polarization free energy of solvation -77.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.607 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.050 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds