Wall clock time and date at job start Tue Mar 31 2020 15:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00253 * 2 1 4 4 N 1.46497 * 109.47172 * 124.99850 * 3 2 1 5 5 C 1.46503 * 120.00417 * 270.00509 * 4 3 2 6 6 C 1.50702 * 109.47125 * 270.00041 * 5 4 3 7 7 H 1.08004 * 119.99667 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00075 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99862 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99851 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47066 * 60.00156 * 10 8 6 12 12 H 1.48504 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47334 * 299.99992 * 10 8 6 14 14 C 1.34778 * 120.00036 * 90.00253 * 4 3 2 15 15 O 1.21283 * 120.00369 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99769 * 359.97438 * 14 4 3 17 17 H 1.09002 * 115.56265 * 325.58565 * 16 14 4 18 18 C 1.53131 * 117.51307 * 111.33356 * 16 14 4 19 19 C 1.52335 * 59.82864 * 107.48238 * 18 16 14 20 20 C 1.50559 * 121.92086 * 111.22087 * 19 18 16 21 21 C 1.37678 * 133.32537 * 323.71877 * 20 19 18 22 22 C 1.38375 * 119.98784 * 179.97438 * 21 20 19 23 23 C 1.38297 * 119.83586 * 0.02562 * 22 21 20 24 24 C 1.37935 * 120.34619 * 359.97438 * 23 22 21 25 25 C 1.39091 * 105.97087 * 143.71976 * 20 19 18 26 26 N 1.39620 * 110.25358 * 359.97438 * 25 20 19 27 27 C 1.34602 * 112.21398 * 0.02562 * 26 25 20 28 28 O 1.21292 * 126.61375 * 179.97438 * 27 26 25 29 29 H 1.08000 * 119.99902 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99707 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99719 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46890 * 5.00317 * 3 2 1 33 33 H 1.08994 * 109.47270 * 244.99876 * 3 2 1 34 34 H 1.09004 * 109.46885 * 29.99733 * 5 4 3 35 35 H 1.08999 * 109.47294 * 149.99858 * 5 4 3 36 36 H 0.97002 * 119.99804 * 179.97438 * 9 8 6 37 37 H 1.09004 * 117.51450 * 214.92376 * 18 16 14 38 38 H 1.09006 * 117.52015 * 0.04507 * 18 16 14 39 39 H 1.08002 * 120.00730 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.07823 * 180.02562 * 22 21 20 41 41 H 1.07994 * 119.83255 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.90811 * 179.97438 * 24 23 22 43 43 H 0.96998 * 123.89525 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8368 1.6369 8 6 2.5185 4.0665 3.6084 9 7 1.9582 3.4659 4.6354 10 14 2.8729 5.8992 3.6775 11 1 2.1380 6.5870 2.5857 12 1 2.4320 6.4396 4.9886 13 1 4.3311 6.1281 3.5135 14 6 4.2497 0.8661 0.9824 15 8 5.0198 0.8878 1.9192 16 6 4.6969 0.3172 -0.3480 17 1 3.9327 -0.2078 -0.9211 18 6 5.7406 1.1201 -1.1297 19 6 6.1295 -0.1894 -0.4555 20 6 6.4811 -1.4196 -1.2492 21 6 6.0074 -1.9509 -2.4277 22 6 6.5435 -3.1274 -2.9208 23 6 7.5544 -3.7669 -2.2268 24 6 8.0317 -3.2378 -1.0457 25 6 7.4975 -2.0536 -0.5422 26 7 7.8068 -1.3312 0.6118 27 6 7.0505 -0.2249 0.7377 28 8 7.1001 0.5867 1.6377 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6214 1.4025 -0.9313 34 1 1.4888 1.6965 2.5460 35 1 3.0990 1.3601 3.2260 36 1 1.7294 3.9745 5.4291 37 1 5.6628 1.1231 -2.2169 38 1 6.1042 2.0447 -0.6812 39 1 5.2176 -1.4494 -2.9673 40 1 6.1733 -3.5452 -3.8453 41 1 7.9731 -4.6849 -2.6118 42 1 8.8210 -3.7433 -0.5093 43 1 8.4877 -1.5964 1.2498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820230066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:34 Heat of formation + Delta-G solvation = 34.018948 kcal Electronic energy + Delta-G solvation = -27577.674883 eV Core-core repulsion = 23783.201241 eV Total energy + Delta-G solvation = -3794.473642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69169 -39.16817 -38.15195 -36.16787 -35.58565 -35.22874 -33.11538 -31.98373 -30.98670 -29.30764 -27.85328 -25.97239 -25.40588 -24.13694 -22.66618 -22.00492 -21.55139 -20.11643 -19.75065 -18.24640 -17.74148 -17.19650 -16.41598 -16.06831 -15.84915 -15.56610 -15.14669 -14.68825 -14.54732 -14.44032 -14.27485 -14.06598 -13.87105 -13.44790 -13.02122 -12.85549 -12.61163 -12.20043 -12.13540 -11.93551 -11.60290 -11.42018 -11.24675 -11.03706 -11.00899 -10.86346 -10.74110 -10.52897 -10.46695 -10.14732 -9.87468 -9.58907 -9.16401 -8.98651 -8.62464 -8.36929 -8.00515 -7.59537 -5.97982 -4.02279 1.00053 1.13711 2.44292 2.52353 3.01015 3.28796 3.36060 3.40481 3.44632 3.64002 3.83190 4.12707 4.25376 4.30638 4.47768 4.52878 4.76955 4.84469 4.90415 5.10152 5.13137 5.26846 5.32711 5.36698 5.41726 5.44215 5.46909 5.58363 5.70331 5.73932 5.93868 6.01330 6.03797 6.21133 6.23024 6.29312 6.53298 6.81200 6.88258 6.93982 6.98013 7.14232 7.51731 7.62337 7.98600 8.28580 8.30832 8.47269 8.97376 9.19683 9.62447 11.10148 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003716 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.775841 B = 7533.192697 C = 8657.516102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.169 4.169 3 C 0.137 3.863 4 N -0.591 5.591 5 C 0.251 3.749 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.518 3.482 15 O -0.498 6.498 16 C -0.131 4.131 17 H 0.131 0.869 18 C -0.102 4.102 19 C -0.121 4.121 20 C -0.106 4.106 21 C -0.064 4.064 22 C -0.148 4.148 23 C -0.085 4.085 24 C -0.149 4.149 25 C 0.161 3.839 26 N -0.670 5.670 27 C 0.548 3.452 28 O -0.425 6.425 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -14.323 -18.586 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C 0.013 3.987 4 N -0.323 5.323 5 C 0.132 3.868 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.302 3.698 15 O -0.372 6.372 16 C -0.153 4.153 17 H 0.148 0.852 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.083 4.083 22 C -0.168 4.168 23 C -0.104 4.104 24 C -0.170 4.170 25 C 0.063 3.937 26 N -0.315 5.315 27 C 0.333 3.667 28 O -0.290 6.290 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.998 -13.631 -17.278 23.093 hybrid contribution 0.366 0.604 0.403 0.813 sum 7.364 -13.026 -16.874 22.554 Atomic orbital electron populations 1.23811 0.95850 1.01716 1.00683 1.23466 0.96425 0.99091 0.99813 1.20569 0.93098 0.95177 0.89903 1.48130 1.10029 1.60591 1.13502 1.19242 0.95229 0.93702 0.78654 1.21399 1.40320 0.93328 1.01243 0.92500 1.24922 0.95109 0.98696 0.95347 1.69927 1.42141 1.36208 1.05188 0.86576 0.78861 0.85013 0.77075 1.20271 1.21240 1.20170 1.19381 0.82817 0.79509 0.88065 1.90909 1.51044 1.54535 1.40676 1.22385 0.90288 1.03226 0.99407 0.85159 1.22945 0.98465 0.93111 0.99396 1.20047 0.98469 0.95863 0.98159 1.19034 0.99099 0.96120 0.96624 1.20249 0.98937 0.95405 0.93690 1.20975 0.98639 0.96157 1.00985 1.20833 0.96300 0.99343 0.93924 1.20333 1.03212 0.95125 0.98356 1.18231 0.95266 0.93033 0.87218 1.43757 1.39250 1.24985 1.23487 1.19234 0.80683 0.80709 0.86055 1.90986 1.64375 1.39760 1.33928 0.88277 0.88859 0.87900 0.89492 0.90762 0.95024 0.93999 0.92746 0.86605 0.86650 0.85563 0.85486 0.85445 0.85770 0.75053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 14.32 29.01 0.42 -1.95 16 2 C -0.17 -2.39 9.54 -36.03 -0.34 -2.74 16 3 C 0.14 2.22 5.49 -5.20 -0.03 2.19 16 4 N -0.59 -12.74 2.44 -176.43 -0.43 -13.17 16 5 C 0.25 6.74 5.16 -5.19 -0.03 6.71 16 6 C -0.52 -15.20 9.39 -34.44 -0.32 -15.53 16 7 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 10 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.52 11.16 7.45 -10.98 -0.08 11.07 16 15 O -0.50 -13.18 11.95 -19.62 -0.23 -13.42 16 16 C -0.13 -2.02 4.67 -92.04 -0.43 -2.45 16 17 H 0.13 1.61 6.97 -51.93 -0.36 1.24 16 18 C -0.10 -1.35 9.99 -27.00 -0.27 -1.62 16 19 C -0.12 -1.81 2.42 -157.52 -0.38 -2.19 16 20 C -0.11 -1.29 6.12 -104.58 -0.64 -1.93 16 21 C -0.06 -0.60 10.03 -39.74 -0.40 -1.00 16 22 C -0.15 -1.16 10.06 -39.51 -0.40 -1.56 16 23 C -0.09 -0.66 10.02 -39.67 -0.40 -1.06 16 24 C -0.15 -1.37 10.07 -39.29 -0.40 -1.76 16 25 C 0.16 1.93 7.12 -83.59 -0.59 1.34 16 26 N -0.67 -9.15 5.90 -9.79 -0.06 -9.21 16 27 C 0.55 9.79 7.77 -11.03 -0.09 9.71 16 28 O -0.42 -9.69 14.49 -19.63 -0.28 -9.98 16 29 H 0.10 1.27 7.84 -52.49 -0.41 0.85 16 30 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.10 1.39 8.03 -52.49 -0.42 0.97 16 32 H 0.09 1.48 7.72 -51.93 -0.40 1.07 16 33 H 0.07 0.99 6.64 -51.93 -0.35 0.64 16 34 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.41 4.62 8.96 -40.82 -0.37 4.26 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -37.21 368.33 -9.83 -47.04 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.62 Total: 3.41 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -4.48 Total: -1.07 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.25 Total: -48.96 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.52 Total: -23.39 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.21 -9.83 -47.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820230066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.062 kcal (2) G-P(sol) polarization free energy of solvation -37.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds