Wall clock time and date at job start Tue Mar 31 2020 15:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00253 * 2 1 4 4 N 1.46497 * 109.47172 * 124.99850 * 3 2 1 5 5 C 1.46503 * 120.00417 * 270.00509 * 4 3 2 6 6 C 1.50702 * 109.47125 * 270.00041 * 5 4 3 7 7 H 1.08004 * 119.99667 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00075 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99862 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99851 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47066 * 60.00156 * 10 8 6 12 12 H 1.48504 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47334 * 299.99992 * 10 8 6 14 14 C 1.34778 * 120.00036 * 90.00253 * 4 3 2 15 15 O 1.21283 * 120.00369 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99769 * 359.97438 * 14 4 3 17 17 H 1.09002 * 115.56265 * 325.58565 * 16 14 4 18 18 C 1.53131 * 117.51307 * 111.33356 * 16 14 4 19 19 C 1.52335 * 59.82864 * 107.48238 * 18 16 14 20 20 C 1.50559 * 121.92086 * 111.22087 * 19 18 16 21 21 C 1.37678 * 133.32537 * 323.71877 * 20 19 18 22 22 C 1.38375 * 119.98784 * 179.97438 * 21 20 19 23 23 C 1.38297 * 119.83586 * 0.02562 * 22 21 20 24 24 C 1.37935 * 120.34619 * 359.97438 * 23 22 21 25 25 C 1.39091 * 105.97087 * 143.71976 * 20 19 18 26 26 N 1.39620 * 110.25358 * 359.97438 * 25 20 19 27 27 C 1.34602 * 112.21398 * 0.02562 * 26 25 20 28 28 O 1.21292 * 126.61375 * 179.97438 * 27 26 25 29 29 H 1.08000 * 119.99902 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99707 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99719 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46890 * 5.00317 * 3 2 1 33 33 H 1.08994 * 109.47270 * 244.99876 * 3 2 1 34 34 H 1.09004 * 109.46885 * 29.99733 * 5 4 3 35 35 H 1.08999 * 109.47294 * 149.99858 * 5 4 3 36 36 H 0.97002 * 119.99804 * 179.97438 * 9 8 6 37 37 H 1.09004 * 117.51450 * 214.92376 * 18 16 14 38 38 H 1.09006 * 117.52015 * 0.04507 * 18 16 14 39 39 H 1.08002 * 120.00730 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.07823 * 180.02562 * 22 21 20 41 41 H 1.07994 * 119.83255 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.90811 * 179.97438 * 24 23 22 43 43 H 0.96998 * 123.89525 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8368 1.6369 8 6 2.5185 4.0665 3.6084 9 7 1.9582 3.4659 4.6354 10 14 2.8729 5.8992 3.6775 11 1 2.1380 6.5870 2.5857 12 1 2.4320 6.4396 4.9886 13 1 4.3311 6.1281 3.5135 14 6 4.2497 0.8661 0.9824 15 8 5.0198 0.8878 1.9192 16 6 4.6969 0.3172 -0.3480 17 1 3.9327 -0.2078 -0.9211 18 6 5.7406 1.1201 -1.1297 19 6 6.1295 -0.1894 -0.4555 20 6 6.4811 -1.4196 -1.2492 21 6 6.0074 -1.9509 -2.4277 22 6 6.5435 -3.1274 -2.9208 23 6 7.5544 -3.7669 -2.2268 24 6 8.0317 -3.2378 -1.0457 25 6 7.4975 -2.0536 -0.5422 26 7 7.8068 -1.3312 0.6118 27 6 7.0505 -0.2249 0.7377 28 8 7.1001 0.5867 1.6377 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6214 1.4025 -0.9313 34 1 1.4888 1.6965 2.5460 35 1 3.0990 1.3601 3.2260 36 1 1.7294 3.9745 5.4291 37 1 5.6628 1.1231 -2.2169 38 1 6.1042 2.0447 -0.6812 39 1 5.2176 -1.4494 -2.9673 40 1 6.1733 -3.5452 -3.8453 41 1 7.9731 -4.6849 -2.6118 42 1 8.8210 -3.7433 -0.5093 43 1 8.4877 -1.5964 1.2498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820230066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:34 Heat of formation + Delta-G solvation = 10.092436 kcal Electronic energy + Delta-G solvation = -27578.712414 eV Core-core repulsion = 23783.201241 eV Total energy + Delta-G solvation = -3795.511174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.75534 -40.63554 -39.28265 -37.49280 -36.96006 -36.41824 -35.08559 -33.62801 -31.75113 -30.19088 -29.76446 -27.11881 -26.80331 -25.83647 -23.69216 -23.44872 -22.44638 -21.33273 -20.88227 -19.61947 -18.75468 -18.63009 -18.39718 -17.43094 -17.11366 -16.78774 -16.38537 -16.32372 -16.03338 -15.63125 -15.42489 -15.08090 -14.81754 -14.73819 -14.26931 -14.22512 -14.08335 -13.75367 -13.36642 -13.26429 -12.99247 -12.86466 -12.81183 -12.61438 -12.27598 -12.22803 -12.10798 -12.04593 -11.73973 -11.70314 -11.52911 -11.24236 -10.65993 -10.30210 -10.28750 -9.67732 -9.41417 -8.91651 -8.23288 -6.38084 0.16818 0.44842 1.30914 1.32615 1.38768 1.39941 1.45652 1.78657 2.01543 2.30191 2.42800 2.80810 3.03352 3.05865 3.17027 3.29541 3.38291 3.73788 3.83673 4.04907 4.14893 4.25980 4.29838 4.36392 4.48109 4.49736 4.59570 4.63208 4.75762 4.82534 4.89066 5.01885 5.08568 5.11549 5.21533 5.24450 5.52951 5.54182 5.64470 5.72587 5.73569 5.77499 5.90694 5.99427 6.06459 6.15804 6.69074 6.79681 7.07860 7.28624 7.56749 8.83708 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003716 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.775841 B = 7533.192697 C = 8657.516102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.596 5.596 5 C 0.269 3.731 6 C -0.541 4.541 7 H 0.053 0.947 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.967 3.033 11 H -0.254 1.254 12 H -0.277 1.277 13 H -0.282 1.282 14 C 0.503 3.497 15 O -0.559 6.559 16 C -0.130 4.130 17 H 0.172 0.828 18 C -0.082 4.082 19 C -0.126 4.126 20 C -0.117 4.117 21 C -0.064 4.064 22 C -0.136 4.136 23 C -0.082 4.082 24 C -0.146 4.146 25 C 0.125 3.875 26 N -0.664 5.664 27 C 0.530 3.470 28 O -0.498 6.498 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.022 0.978 35 H -0.013 1.013 36 H 0.267 0.733 37 H 0.171 0.829 38 H 0.086 0.914 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.141 0.859 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 -15.940 -23.284 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.148 3.852 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.791 3.209 11 H -0.179 1.179 12 H -0.202 1.202 13 H -0.208 1.208 14 C 0.291 3.709 15 O -0.437 6.437 16 C -0.151 4.151 17 H 0.189 0.811 18 C -0.119 4.119 19 C -0.130 4.130 20 C -0.120 4.120 21 C -0.082 4.082 22 C -0.155 4.155 23 C -0.100 4.100 24 C -0.167 4.167 25 C 0.028 3.972 26 N -0.309 5.309 27 C 0.317 3.683 28 O -0.370 6.370 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.040 0.960 35 H 0.005 0.995 36 H 0.075 0.925 37 H 0.188 0.812 38 H 0.105 0.895 39 H 0.172 0.828 40 H 0.179 0.821 41 H 0.178 0.822 42 H 0.159 0.841 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 6.475 -15.314 -22.076 27.637 hybrid contribution 0.542 0.936 1.813 2.111 sum 7.017 -14.378 -20.264 25.818 Atomic orbital electron populations 1.24041 0.95537 1.02822 0.98328 1.23344 0.96796 0.98248 1.01861 1.20848 0.92600 0.96234 0.89217 1.48112 1.11366 1.60205 1.13018 1.18605 0.93545 0.92604 0.80433 1.21687 1.40341 0.94435 1.01467 0.92845 1.25883 0.94675 1.03910 0.94825 1.70057 1.42938 1.38200 1.05783 0.85480 0.78309 0.78985 0.78108 1.17865 1.20220 1.20801 1.20471 0.81930 0.78535 0.89969 1.90904 1.52576 1.56782 1.43404 1.22254 0.91683 1.04771 0.96436 0.81102 1.23144 0.95726 0.91309 1.01742 1.20072 0.97024 0.98183 0.97719 1.19028 0.99961 0.95109 0.97936 1.20610 0.99296 0.95859 0.92426 1.21456 0.97455 0.94993 1.01611 1.21307 0.95770 1.00126 0.92816 1.20670 1.03226 0.93885 0.98935 1.18589 0.97021 0.94612 0.86969 1.43634 1.38627 1.24221 1.24416 1.19898 0.81331 0.80786 0.86247 1.90934 1.66808 1.42526 1.36689 0.88385 0.86553 0.86842 0.90634 0.87081 0.96047 0.99466 0.92465 0.81191 0.89534 0.82810 0.82074 0.82180 0.84131 0.74510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 14.32 67.78 0.97 -3.07 16 2 C -0.18 -4.90 9.54 25.64 0.24 -4.66 16 3 C 0.13 4.23 5.49 85.63 0.47 4.70 16 4 N -0.60 -26.80 2.44 -830.50 -2.03 -28.82 16 5 C 0.27 15.50 5.16 85.63 0.44 15.94 16 6 C -0.54 -32.89 9.39 25.60 0.24 -32.65 16 7 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 8 C 0.01 0.35 5.46 84.65 0.46 0.81 16 9 N -0.93 -59.04 13.29 21.45 0.28 -58.76 16 10 Si 0.97 47.16 29.54 68.60 2.03 49.19 16 11 H -0.25 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 14 C 0.50 22.81 7.45 87.66 0.65 23.46 16 15 O -0.56 -32.29 11.95 21.03 0.25 -32.04 16 16 C -0.13 -3.91 4.67 -11.71 -0.05 -3.97 16 17 H 0.17 3.62 6.97 -2.39 -0.02 3.61 16 18 C -0.08 -2.07 9.99 30.42 0.30 -1.77 16 19 C -0.13 -3.73 2.42 -54.13 -0.13 -3.86 16 20 C -0.12 -2.59 6.12 -19.84 -0.12 -2.71 16 21 C -0.06 -0.88 10.03 22.17 0.22 -0.66 16 22 C -0.14 -1.35 10.06 22.32 0.22 -1.13 16 23 C -0.08 -0.87 10.02 22.21 0.22 -0.64 16 24 C -0.15 -2.28 10.07 22.46 0.23 -2.05 16 25 C 0.12 2.86 7.12 38.37 0.27 3.13 16 26 N -0.66 -19.16 5.90 -303.37 -1.79 -20.95 16 27 C 0.53 20.37 7.77 87.71 0.68 21.05 16 28 O -0.50 -25.20 14.49 21.00 0.30 -24.90 16 29 H 0.10 2.35 7.84 -2.91 -0.02 2.33 16 30 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.11 2.81 8.03 -2.91 -0.02 2.78 16 32 H 0.08 2.56 7.72 -2.39 -0.02 2.54 16 33 H 0.11 2.66 6.64 -2.39 -0.02 2.65 16 34 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16 35 H -0.01 -0.86 7.42 -2.39 -0.02 -0.88 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.17 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 39 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 42 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.42 10.27 8.96 -92.71 -0.83 9.44 16 Total: -1.00 -91.91 368.33 4.59 -87.33 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.21 Total: 17.03 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.33 Total: 11.93 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.53 Total: -108.53 kcal Atomic # 8 Polarization: -57.49 SS G_CDS: 0.56 Total: -56.94 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -91.91 4.59 -87.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820230066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.420 kcal (2) G-P(sol) polarization free energy of solvation -91.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds