Wall clock time and date at job start Tue Mar 31 2020 15:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 H 1.09003 * 109.47501 * 305.00145 * 3 2 1 5 5 C 1.53001 * 109.46886 * 185.00316 * 3 2 1 6 6 O 1.42907 * 109.47191 * 306.21429 * 5 3 2 7 7 N 1.46504 * 109.46929 * 65.00362 * 3 2 1 8 8 C 1.46496 * 119.99712 * 53.46018 * 7 3 2 9 9 C 1.34777 * 119.99820 * 233.45291 * 7 3 2 10 10 O 1.21591 * 119.99846 * 0.02562 * 9 7 3 11 11 N 1.34777 * 119.99573 * 180.02562 * 9 7 3 12 12 C 1.40139 * 119.99732 * 183.69535 * 11 9 7 13 13 C 1.38699 * 120.07164 * 328.90505 * 12 11 9 14 14 C 1.38197 * 120.02087 * 179.70261 * 13 12 11 15 15 C 1.38546 * 120.17223 * 0.59945 * 14 13 12 16 16 F 1.35103 * 119.92489 * 179.70261 * 15 14 13 17 17 C 1.38346 * 120.15025 * 359.67709 * 15 14 13 18 18 C 1.38742 * 119.97962 * 0.02562 * 17 15 14 19 19 O 1.35773 * 120.08679 * 179.97438 * 18 17 15 20 20 C 1.34806 * 117.00178 * 7.08366 * 19 18 17 21 21 H 1.07997 * 120.00173 * 354.76236 * 20 19 18 22 22 C 1.38642 * 120.00037 * 174.75177 * 20 19 18 23 23 N 1.31575 * 119.99619 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47391 * 120.00042 * 24 22 20 27 27 H 1.48505 * 109.46815 * 239.99956 * 24 22 20 28 28 H 1.09004 * 109.46570 * 299.99902 * 1 2 3 29 29 H 1.08998 * 109.47131 * 59.99642 * 1 2 3 30 30 H 1.08996 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46933 * 240.00497 * 2 1 3 32 32 H 1.08998 * 109.47131 * 120.00358 * 2 1 3 33 33 H 1.08999 * 109.47352 * 66.21301 * 5 3 2 34 34 H 1.09001 * 109.46787 * 186.21691 * 5 3 2 35 35 H 0.96698 * 113.99611 * 179.97438 * 6 5 3 36 36 H 1.09009 * 109.47137 * 275.62269 * 8 7 3 37 37 H 1.09000 * 109.47860 * 35.62583 * 8 7 3 38 38 H 1.09007 * 109.46953 * 155.62905 * 8 7 3 39 39 H 0.96997 * 120.00514 * 3.41228 * 11 9 7 40 40 H 1.08004 * 119.99196 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.91654 * 180.27831 * 14 13 12 42 42 H 1.08007 * 120.01506 * 180.02562 * 17 15 14 43 43 H 0.97002 * 119.99464 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 4.1280 0.6176 0.8948 7 7 1.6525 2.0974 1.2519 8 6 1.9921 1.4809 2.5367 9 6 0.9837 3.2672 1.2215 10 8 0.7015 3.7786 0.1551 11 7 0.6276 3.8699 2.3732 12 6 -0.1346 5.0454 2.3423 13 6 -0.0017 5.9323 1.2842 14 6 -0.7584 7.0882 1.2517 15 6 -1.6421 7.3712 2.2805 16 9 -2.3750 8.5056 2.2466 17 6 -1.7762 6.4944 3.3422 18 6 -1.0241 5.3290 3.3782 19 8 -1.1536 4.4672 4.4193 20 6 -2.1320 4.7259 5.3099 21 1 -2.7144 5.6314 5.2245 22 6 -2.3907 3.8295 6.3354 23 7 -1.6809 2.7265 6.4396 24 14 -3.7469 4.1875 7.5690 25 1 -4.3910 5.4830 7.2343 26 1 -4.7600 3.1030 7.5196 27 1 -3.1672 4.2615 8.9342 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8491 1.0578 -1.1045 34 1 3.9373 2.4627 -0.0151 35 1 5.0937 0.5716 0.8753 36 1 1.2328 0.7436 2.7979 37 1 2.9628 0.9911 2.4595 38 1 2.0332 2.2493 3.3088 39 1 0.8955 3.4878 3.2236 40 1 0.6902 5.7173 0.4832 41 1 -0.6568 7.7754 0.4248 42 1 -2.4661 6.7169 4.1429 43 1 -1.8617 2.0995 7.1573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836457118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:12 Heat of formation + Delta-G solvation = -113.231685 kcal Electronic energy + Delta-G solvation = -28571.746213 eV Core-core repulsion = 24340.118079 eV Total energy + Delta-G solvation = -4231.628134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.20848 -40.49447 -39.04663 -37.69942 -36.32090 -35.30736 -34.22735 -32.57621 -32.35693 -29.40934 -29.14283 -28.00264 -26.34222 -25.46898 -23.67853 -22.61630 -21.80264 -20.75168 -19.21189 -18.52698 -18.30744 -17.60176 -17.14048 -16.68125 -15.94929 -15.57487 -15.21708 -15.17476 -14.93639 -14.49835 -14.31101 -14.22424 -13.81351 -13.66228 -13.50288 -13.31612 -13.16440 -12.75313 -12.66025 -12.36565 -12.32135 -12.16553 -11.78704 -11.61922 -11.34927 -11.19305 -11.05805 -10.96333 -10.85338 -10.69218 -10.49588 -10.14249 -9.76874 -9.72720 -9.36090 -8.93830 -8.46264 -7.82861 -7.02262 -6.57743 -4.15163 1.89823 2.16097 2.85671 3.07043 3.09765 3.14896 3.46899 3.86700 4.10619 4.20734 4.40371 4.70880 4.87553 4.93685 5.00546 5.12091 5.17246 5.21658 5.35538 5.42447 5.54177 5.61681 5.71771 5.76576 5.78300 5.92753 5.98973 6.06712 6.12924 6.21792 6.27942 6.39614 6.58692 6.66347 6.82242 6.95280 6.97071 7.11904 7.20049 7.30708 7.42403 7.70987 7.86645 8.25635 8.87094 8.90003 9.50341 10.59576 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.004236 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.007717 B = 6608.643002 C = 8543.210261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.160 3.840 4 H 0.112 0.888 5 C 0.066 3.934 6 O -0.564 6.564 7 N -0.618 5.618 8 C 0.071 3.929 9 C 0.705 3.295 10 O -0.589 6.589 11 N -0.663 5.663 12 C 0.081 3.919 13 C -0.057 4.057 14 C -0.226 4.226 15 C 0.125 3.875 16 F -0.152 7.152 17 C -0.257 4.257 18 C 0.155 3.845 19 O -0.171 6.171 20 C -0.391 4.391 21 H 0.094 0.906 22 C 0.043 3.957 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.374 0.626 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.412 0.588 40 H 0.147 0.853 41 H 0.122 0.878 42 H 0.142 0.858 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 -4.288 -9.270 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.055 3.945 4 H 0.130 0.870 5 C -0.013 4.013 6 O -0.370 6.370 7 N -0.355 5.355 8 C -0.072 4.072 9 C 0.407 3.593 10 O -0.469 6.469 11 N -0.311 5.311 12 C -0.014 4.014 13 C -0.078 4.078 14 C -0.247 4.247 15 C 0.105 3.895 16 F -0.131 7.131 17 C -0.278 4.278 18 C 0.099 3.901 19 O -0.075 6.075 20 C -0.467 4.467 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.221 0.779 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.250 0.750 40 H 0.165 0.835 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.202 -4.434 -9.629 14.037 hybrid contribution -0.235 0.281 1.027 1.091 sum 8.966 -4.153 -8.602 13.101 Atomic orbital electron populations 1.21741 0.95379 1.01244 1.02491 1.21753 0.96335 0.95486 1.02825 1.21100 0.91768 0.93994 0.87609 0.86992 1.22687 0.94211 0.93987 0.90411 1.86491 1.25133 1.70965 1.54424 1.46910 1.59697 1.21768 1.07149 1.21962 1.02686 0.98617 0.83896 1.15838 0.78725 0.80516 0.84180 1.90818 1.61204 1.65787 1.29045 1.42414 1.54767 1.25611 1.08347 1.16721 0.98786 0.88791 0.97145 1.20793 0.98792 0.90758 0.97413 1.20498 1.02899 1.00815 1.00443 1.17460 0.92952 0.83028 0.96073 1.91406 1.75999 1.49039 1.96678 1.20830 1.08610 0.96594 1.01776 1.18752 0.92449 0.90195 0.88665 1.83905 1.49402 1.44572 1.29577 1.21381 1.11709 1.07611 1.05962 0.88838 1.25269 0.98456 0.94703 0.97791 1.70023 1.38318 1.09426 1.31668 0.85626 0.79474 0.78892 0.79389 1.18973 1.20073 1.20065 0.92342 0.92827 0.92938 0.91345 0.90652 0.92780 0.93214 0.77900 0.92771 0.88503 0.91785 0.74990 0.83533 0.86019 0.84019 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.80 37.16 0.36 -1.53 16 2 C -0.13 -1.38 4.97 -26.73 -0.13 -1.51 16 3 C 0.16 1.94 2.54 -67.93 -0.17 1.76 16 4 H 0.11 1.50 6.93 -51.93 -0.36 1.14 16 5 C 0.07 0.61 6.84 37.16 0.25 0.87 16 6 O -0.56 -4.81 10.04 -35.23 -0.35 -5.17 16 7 N -0.62 -9.01 2.21 -179.66 -0.40 -9.40 16 8 C 0.07 0.95 9.08 59.84 0.54 1.49 16 9 C 0.70 12.84 8.14 -86.92 -0.71 12.13 16 10 O -0.59 -11.87 12.90 5.29 0.07 -11.80 16 11 N -0.66 -12.91 5.12 -14.07 -0.07 -12.98 16 12 C 0.08 1.73 6.39 -83.44 -0.53 1.20 16 13 C -0.06 -1.13 8.72 -39.43 -0.34 -1.47 16 14 C -0.23 -4.31 10.02 -39.48 -0.40 -4.71 16 15 C 0.12 2.55 7.29 -39.43 -0.29 2.26 16 16 F -0.15 -2.97 17.26 2.25 0.04 -2.94 16 17 C -0.26 -5.72 9.14 -39.36 -0.36 -6.08 16 18 C 0.16 3.65 6.66 -38.94 -0.26 3.39 16 19 O -0.17 -4.53 9.25 0.05 0.00 -4.53 16 20 C -0.39 -10.41 9.49 30.88 0.29 -10.12 16 21 H 0.09 2.36 5.22 -52.49 -0.27 2.08 16 22 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 23 N -0.86 -23.58 13.67 55.48 0.76 -22.82 16 24 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 28 H 0.06 0.89 7.75 -51.93 -0.40 0.48 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.86 6.91 -51.93 -0.36 0.50 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.37 1.64 9.12 45.56 0.42 2.05 16 36 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.10 1.14 5.26 -51.93 -0.27 0.87 16 38 H 0.06 0.88 6.04 -51.93 -0.31 0.57 16 39 H 0.41 7.82 6.06 -40.82 -0.25 7.58 16 40 H 0.15 2.84 5.94 -52.48 -0.31 2.53 16 41 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.14 3.15 5.66 -52.48 -0.30 2.85 16 43 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -30.69 356.00 -5.97 -36.66 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.52 Total: 14.05 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.83 Total: -1.31 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.29 Total: -45.21 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.29 Total: -21.50 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.69 -5.97 -36.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836457118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.576 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds