Wall clock time and date at job start Tue Mar 31 2020 15:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 H 1.09003 * 109.47501 * 305.00145 * 3 2 1 5 5 C 1.53001 * 109.46886 * 185.00316 * 3 2 1 6 6 O 1.42907 * 109.47191 * 306.21429 * 5 3 2 7 7 N 1.46504 * 109.46929 * 65.00362 * 3 2 1 8 8 C 1.46496 * 119.99712 * 53.46018 * 7 3 2 9 9 C 1.34777 * 119.99820 * 233.45291 * 7 3 2 10 10 O 1.21591 * 119.99846 * 0.02562 * 9 7 3 11 11 N 1.34777 * 119.99573 * 180.02562 * 9 7 3 12 12 C 1.40139 * 119.99732 * 183.69535 * 11 9 7 13 13 C 1.38699 * 120.07164 * 328.90505 * 12 11 9 14 14 C 1.38197 * 120.02087 * 179.70261 * 13 12 11 15 15 C 1.38546 * 120.17223 * 0.59945 * 14 13 12 16 16 F 1.35103 * 119.92489 * 179.70261 * 15 14 13 17 17 C 1.38346 * 120.15025 * 359.67709 * 15 14 13 18 18 C 1.38742 * 119.97962 * 0.02562 * 17 15 14 19 19 O 1.35773 * 120.08679 * 179.97438 * 18 17 15 20 20 C 1.34806 * 117.00178 * 7.08366 * 19 18 17 21 21 H 1.07997 * 120.00173 * 354.76236 * 20 19 18 22 22 C 1.38642 * 120.00037 * 174.75177 * 20 19 18 23 23 N 1.31575 * 119.99619 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47391 * 120.00042 * 24 22 20 27 27 H 1.48505 * 109.46815 * 239.99956 * 24 22 20 28 28 H 1.09004 * 109.46570 * 299.99902 * 1 2 3 29 29 H 1.08998 * 109.47131 * 59.99642 * 1 2 3 30 30 H 1.08996 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46933 * 240.00497 * 2 1 3 32 32 H 1.08998 * 109.47131 * 120.00358 * 2 1 3 33 33 H 1.08999 * 109.47352 * 66.21301 * 5 3 2 34 34 H 1.09001 * 109.46787 * 186.21691 * 5 3 2 35 35 H 0.96698 * 113.99611 * 179.97438 * 6 5 3 36 36 H 1.09009 * 109.47137 * 275.62269 * 8 7 3 37 37 H 1.09000 * 109.47860 * 35.62583 * 8 7 3 38 38 H 1.09007 * 109.46953 * 155.62905 * 8 7 3 39 39 H 0.96997 * 120.00514 * 3.41228 * 11 9 7 40 40 H 1.08004 * 119.99196 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.91654 * 180.27831 * 14 13 12 42 42 H 1.08007 * 120.01506 * 180.02562 * 17 15 14 43 43 H 0.97002 * 119.99464 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 4.1280 0.6176 0.8948 7 7 1.6525 2.0974 1.2519 8 6 1.9921 1.4809 2.5367 9 6 0.9837 3.2672 1.2215 10 8 0.7015 3.7786 0.1551 11 7 0.6276 3.8699 2.3732 12 6 -0.1346 5.0454 2.3423 13 6 -0.0017 5.9323 1.2842 14 6 -0.7584 7.0882 1.2517 15 6 -1.6421 7.3712 2.2805 16 9 -2.3750 8.5056 2.2466 17 6 -1.7762 6.4944 3.3422 18 6 -1.0241 5.3290 3.3782 19 8 -1.1536 4.4672 4.4193 20 6 -2.1320 4.7259 5.3099 21 1 -2.7144 5.6314 5.2245 22 6 -2.3907 3.8295 6.3354 23 7 -1.6809 2.7265 6.4396 24 14 -3.7469 4.1875 7.5690 25 1 -4.3910 5.4830 7.2343 26 1 -4.7600 3.1030 7.5196 27 1 -3.1672 4.2615 8.9342 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8491 1.0578 -1.1045 34 1 3.9373 2.4627 -0.0151 35 1 5.0937 0.5716 0.8753 36 1 1.2328 0.7436 2.7979 37 1 2.9628 0.9911 2.4595 38 1 2.0332 2.2493 3.3088 39 1 0.8955 3.4878 3.2236 40 1 0.6902 5.7173 0.4832 41 1 -0.6568 7.7754 0.4248 42 1 -2.4661 6.7169 4.1429 43 1 -1.8617 2.0995 7.1573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836457118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:11 Heat of formation + Delta-G solvation = -133.316714 kcal Electronic energy + Delta-G solvation = -28572.617165 eV Core-core repulsion = 24340.118079 eV Total energy + Delta-G solvation = -4232.499086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.82190 -41.94595 -40.63694 -38.87613 -37.89218 -36.32206 -35.72648 -34.31296 -33.70211 -31.08598 -30.27045 -29.47426 -27.57154 -27.33490 -24.67247 -24.12630 -23.41505 -22.10197 -20.46307 -20.14733 -19.88088 -19.07253 -18.22404 -18.13200 -17.24177 -16.99441 -16.84703 -16.60957 -16.54957 -15.96235 -15.68338 -15.38757 -15.26355 -15.22359 -15.06485 -14.89104 -14.32889 -14.00577 -13.89611 -13.83438 -13.57117 -13.42689 -13.32490 -13.04631 -12.83338 -12.60805 -12.35679 -12.19057 -12.12787 -11.97883 -11.82108 -11.65264 -11.29081 -10.99506 -10.83315 -10.74420 -9.69981 -9.51091 -8.70038 -8.51104 -6.16886 0.21565 0.46073 1.36493 1.42423 1.52425 1.54239 2.01768 2.13599 2.69212 2.83141 3.01786 3.21246 3.43793 3.46244 3.77144 3.94679 4.05425 4.15825 4.19697 4.25297 4.38432 4.47209 4.50537 4.59034 4.62107 4.72595 4.73548 4.95746 4.97250 5.01275 5.02433 5.09472 5.21895 5.25988 5.27311 5.34826 5.39156 5.52839 5.64318 5.89593 5.93672 6.07167 6.80636 6.93555 6.97508 7.41928 7.63352 8.69871 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.004236 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.007717 B = 6608.643002 C = 8543.210261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.149 3.851 4 H 0.099 0.901 5 C 0.076 3.924 6 O -0.576 6.576 7 N -0.609 5.609 8 C 0.075 3.925 9 C 0.700 3.300 10 O -0.610 6.610 11 N -0.668 5.668 12 C 0.079 3.921 13 C -0.057 4.057 14 C -0.201 4.201 15 C 0.120 3.880 16 F -0.145 7.145 17 C -0.262 4.262 18 C 0.128 3.872 19 O -0.205 6.205 20 C -0.415 4.415 21 H 0.099 0.901 22 C -0.009 4.009 23 N -0.905 5.905 24 Si 1.012 2.988 25 H -0.257 1.257 26 H -0.270 1.270 27 H -0.266 1.266 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.395 0.605 36 H 0.045 0.955 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.411 0.589 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 -4.206 -10.605 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.046 3.954 4 H 0.117 0.883 5 C -0.002 4.002 6 O -0.385 6.385 7 N -0.345 5.345 8 C -0.068 4.068 9 C 0.403 3.597 10 O -0.492 6.492 11 N -0.316 5.316 12 C -0.016 4.016 13 C -0.077 4.077 14 C -0.220 4.220 15 C 0.100 3.900 16 F -0.123 7.123 17 C -0.283 4.283 18 C 0.074 3.926 19 O -0.111 6.111 20 C -0.491 4.491 21 H 0.116 0.884 22 C -0.209 4.209 23 N -0.542 5.542 24 Si 0.832 3.168 25 H -0.180 1.180 26 H -0.195 1.195 27 H -0.191 1.191 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.249 0.751 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.075 -4.359 -11.004 15.543 hybrid contribution -0.386 0.304 1.223 1.318 sum 9.689 -4.055 -9.782 14.352 Atomic orbital electron populations 1.21723 0.96878 1.01580 1.00514 1.21714 0.94842 0.94857 1.04064 1.21389 0.94196 0.94082 0.85745 0.88350 1.22485 0.91739 0.94046 0.91960 1.86401 1.27198 1.70569 1.54313 1.47033 1.58325 1.20486 1.08631 1.22007 1.03494 0.98102 0.83179 1.15992 0.78932 0.81419 0.83390 1.90780 1.62253 1.66695 1.29440 1.42473 1.54756 1.25476 1.08908 1.17006 0.98163 0.89648 0.96825 1.20982 0.99097 0.90674 0.96981 1.20893 1.00476 1.00364 1.00308 1.17443 0.93541 0.83088 0.95959 1.91426 1.75850 1.48430 1.96617 1.20903 1.08274 0.96749 1.02343 1.19103 0.93696 0.90644 0.89134 1.83887 1.50370 1.46006 1.30793 1.21775 1.12381 1.08258 1.06675 0.88412 1.26382 1.00739 0.94335 0.99422 1.70134 1.40406 1.10688 1.32935 0.84613 0.76343 0.79025 0.76833 1.18038 1.19515 1.19105 0.95753 0.93263 0.91486 0.88536 0.90766 0.89863 0.93983 0.75436 0.93612 0.86290 0.92604 0.75091 0.82531 0.82386 0.84642 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.80 71.98 0.71 -3.00 16 2 C -0.12 -2.36 4.97 30.60 0.15 -2.21 16 3 C 0.15 3.42 2.54 44.99 0.11 3.54 16 4 H 0.10 2.56 6.93 -2.39 -0.02 2.54 16 5 C 0.08 1.22 6.84 71.98 0.49 1.72 16 6 O -0.58 -8.17 10.04 -148.98 -1.50 -9.67 16 7 N -0.61 -17.68 2.21 -840.58 -1.86 -19.54 16 8 C 0.07 1.99 9.08 127.77 1.16 3.15 16 9 C 0.70 25.79 8.14 179.05 1.46 27.25 16 10 O -0.61 -24.52 12.90 -4.00 -0.05 -24.57 16 11 N -0.67 -26.75 5.12 -316.70 -1.62 -28.37 16 12 C 0.08 3.45 6.39 38.22 0.24 3.69 16 13 C -0.06 -2.19 8.72 22.37 0.20 -1.99 16 14 C -0.20 -7.17 10.02 22.33 0.22 -6.95 16 15 C 0.12 4.74 7.29 22.37 0.16 4.90 16 16 F -0.14 -5.37 17.26 44.97 0.78 -4.59 16 17 C -0.26 -11.80 9.14 22.42 0.20 -11.60 16 18 C 0.13 6.20 6.66 22.68 0.15 6.35 16 19 O -0.21 -11.38 9.25 -22.75 -0.21 -11.59 16 20 C -0.42 -22.97 9.49 67.92 0.64 -22.32 16 21 H 0.10 5.10 5.22 -2.91 -0.02 5.09 16 22 C -0.01 -0.50 5.49 84.83 0.47 -0.03 16 23 N -0.90 -51.46 13.67 21.61 0.30 -51.17 16 24 Si 1.01 41.37 29.55 68.60 2.03 43.40 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 27 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 28 H 0.02 0.75 7.75 -2.38 -0.02 0.73 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 1.56 6.91 -2.39 -0.02 1.54 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.40 2.17 9.12 -74.06 -0.68 1.50 16 36 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.12 2.65 5.26 -2.39 -0.01 2.64 16 38 H 0.06 1.58 6.04 -2.38 -0.01 1.57 16 39 H 0.41 16.42 6.06 -92.71 -0.56 15.86 16 40 H 0.16 5.83 5.94 -2.91 -0.02 5.81 16 41 H 0.16 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.14 6.18 5.66 -2.91 -0.02 6.16 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -68.17 356.00 4.08 -64.09 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -0.15 Total: 39.53 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.37 Total: 2.49 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -3.19 Total: -99.09 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.76 Total: -45.84 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -68.17 4.08 -64.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836457118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.226 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds