Wall clock time and date at job start Tue Mar 31 2020 15:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47358 * 168.25755 * 3 2 1 5 5 C 1.37100 * 119.99825 * 270.11348 * 4 3 2 6 6 H 1.08002 * 119.99750 * 210.12787 * 5 4 3 7 7 C 1.38949 * 120.00034 * 30.13825 * 5 4 3 8 8 N 1.31409 * 120.00150 * 6.58652 * 7 5 4 9 9 Si 1.86803 * 119.99814 * 186.59526 * 7 5 4 10 10 H 1.48496 * 109.47171 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46991 * 119.99610 * 9 7 5 12 12 H 1.48502 * 109.46937 * 239.99410 * 9 7 5 13 13 C 1.34778 * 120.00089 * 90.10626 * 4 3 2 14 14 O 1.21288 * 119.99948 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00017 * 0.02562 * 13 4 3 16 16 H 1.09008 * 110.91158 * 62.44501 * 15 13 4 17 17 C 1.55148 * 111.00488 * 186.34682 * 15 13 4 18 18 C 1.54333 * 103.02052 * 153.38434 * 17 15 13 19 19 N 1.47023 * 107.26577 * 338.13782 * 18 17 15 20 20 C 1.34778 * 125.64907 * 178.85344 * 19 18 17 21 21 O 1.21549 * 119.99743 * 184.76900 * 20 19 18 22 22 C 1.47846 * 119.99821 * 4.76648 * 20 19 18 23 23 C 1.39578 * 120.13835 * 173.92271 * 22 20 19 24 24 C 1.37965 * 119.84828 * 179.97438 * 23 22 20 25 25 C 1.38359 * 120.14279 * 0.02562 * 24 23 22 26 26 C 1.38358 * 120.29758 * 0.23598 * 25 24 23 27 27 C 1.37957 * 120.13948 * 359.48720 * 26 25 24 28 28 C 1.47427 * 108.70174 * 358.58654 * 19 18 17 29 29 H 4.40646 * 5.51392 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.47517 * 48.25525 * 3 2 1 31 31 H 1.08997 * 109.47386 * 288.25657 * 3 2 1 32 32 H 0.97001 * 119.99752 * 180.02562 * 8 7 5 33 33 H 1.09008 * 110.71852 * 271.93967 * 17 15 13 34 34 H 1.08997 * 110.72380 * 35.21040 * 17 15 13 35 35 H 1.09005 * 109.98948 * 218.66574 * 18 17 15 36 36 H 1.08998 * 109.78521 * 97.49725 * 18 17 15 37 37 H 1.07994 * 120.07538 * 359.95602 * 23 22 20 38 38 H 1.07996 * 119.92647 * 179.97438 * 24 23 22 39 39 H 1.08005 * 119.84761 * 179.97438 * 25 24 23 40 40 H 1.07993 * 119.92755 * 179.74741 * 26 25 24 41 41 H 1.08007 * 120.07131 * 180.25407 * 27 26 25 42 42 H 1.09000 * 110.36455 * 143.19235 * 28 19 18 43 43 H 1.08992 * 110.36646 * 265.51880 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3532 -0.2811 5 6 3.3598 1.7451 -1.5753 6 1 4.1256 2.4751 -1.7924 7 6 2.6037 1.2033 -2.6075 8 7 1.5882 0.4153 -2.3344 9 14 3.0310 1.5950 -4.3833 10 1 4.2084 2.4991 -4.4213 11 1 3.3490 0.3367 -5.1050 12 1 1.8748 2.2609 -5.0353 13 6 3.3600 2.2122 0.7325 14 8 3.7634 3.3321 0.4998 15 6 3.1119 1.7812 2.1551 16 1 3.7630 0.9511 2.4294 17 6 3.2853 2.9714 3.1351 18 6 2.3764 2.5815 4.3199 19 7 1.3908 1.6148 3.8142 20 6 0.4307 1.0160 4.5464 21 8 -0.2767 0.1658 4.0421 22 6 0.2380 1.3931 5.9629 23 6 -0.8336 0.8696 6.6880 24 6 -1.0074 1.2252 8.0096 25 6 -0.1227 2.0991 8.6161 26 6 0.9385 2.6259 7.9015 27 6 1.1270 2.2740 6.5809 28 6 1.6227 1.4139 2.3722 29 1 -1.0503 -0.0004 0.0003 30 1 3.0096 -0.6834 -0.7667 31 1 3.0094 -0.3211 0.9759 32 1 1.0606 0.0368 -3.0551 33 1 4.3236 3.0593 3.4552 34 1 2.9413 3.8997 2.6791 35 1 1.8659 3.4646 4.7043 36 1 2.9739 2.1237 5.1082 37 1 -1.5252 0.1880 6.2154 38 1 -1.8364 0.8212 8.5717 39 1 -0.2635 2.3746 9.6509 40 1 1.6231 3.3106 8.3797 41 1 1.9581 2.6827 6.0252 42 1 1.4451 0.3732 2.1009 43 1 0.9803 2.0737 1.7892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861520730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:09 Heat of formation + Delta-G solvation = 63.870085 kcal Electronic energy + Delta-G solvation = -27648.671330 eV Core-core repulsion = 23855.492130 eV Total energy + Delta-G solvation = -3793.179200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62173 -39.21229 -38.11775 -36.82486 -35.24428 -32.63005 -31.77711 -31.25014 -31.13612 -30.69917 -28.89326 -26.34889 -25.30180 -24.56703 -22.90526 -22.41718 -21.55113 -19.88011 -18.93085 -17.76747 -17.36096 -16.85861 -16.50916 -16.47726 -15.85547 -15.32979 -14.72046 -14.68687 -14.43222 -14.22043 -14.04777 -13.75845 -13.64429 -13.22305 -12.97908 -12.92291 -12.65396 -12.43201 -12.10906 -12.02851 -11.81737 -11.57575 -11.41255 -11.07072 -10.80356 -10.67079 -10.63300 -10.44621 -10.33769 -9.82029 -9.32344 -9.18210 -9.14552 -9.05455 -8.76018 -8.51259 -8.41947 -7.80541 -6.18832 -3.99857 0.73531 1.17596 2.86670 2.98198 3.14555 3.25154 3.30544 3.68132 3.76125 3.95220 4.18012 4.28145 4.41189 4.55377 4.69538 4.73037 4.82640 4.90641 4.99899 5.09565 5.13428 5.22319 5.28394 5.38863 5.49048 5.56684 5.61043 5.65676 5.78694 5.88547 6.07184 6.10213 6.13838 6.15490 6.23687 6.24631 6.36123 6.42148 6.51013 6.70283 6.70601 7.20163 7.53842 7.58905 8.08309 8.23741 8.38986 9.07424 9.09968 9.30060 9.84133 10.69871 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.003218 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.982374 B = 8699.993222 C = 9602.915294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.102 4.102 3 C 0.235 3.765 4 N -0.438 5.438 5 C -0.315 4.315 6 H 0.099 0.901 7 C 0.034 3.966 8 N -0.860 5.860 9 Si 0.926 3.074 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.467 3.533 14 O -0.575 6.575 15 C -0.119 4.119 16 H 0.096 0.904 17 C -0.111 4.111 18 C 0.088 3.912 19 N -0.611 5.611 20 C 0.568 3.432 21 O -0.532 6.532 22 C -0.126 4.126 23 C -0.062 4.062 24 C -0.131 4.131 25 C -0.101 4.101 26 C -0.130 4.130 27 C -0.126 4.126 28 C 0.116 3.884 29 H 0.193 0.807 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.268 0.732 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.163 0.837 42 H 0.098 0.902 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 0.591 18.921 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.105 4.105 3 C 0.111 3.889 4 N -0.156 5.156 5 C -0.443 4.443 6 H 0.116 0.884 7 C -0.170 4.170 8 N -0.497 5.497 9 Si 0.752 3.248 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.254 3.746 14 O -0.459 6.459 15 C -0.141 4.141 16 H 0.114 0.886 17 C -0.149 4.149 18 C -0.035 4.035 19 N -0.344 5.344 20 C 0.357 3.643 21 O -0.410 6.410 22 C -0.129 4.129 23 C -0.081 4.081 24 C -0.149 4.149 25 C -0.119 4.119 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.006 4.006 29 H 0.210 0.790 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.180 0.820 42 H 0.117 0.883 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.229 0.535 18.394 18.443 hybrid contribution -0.305 0.055 -0.949 0.999 sum -1.534 0.590 17.445 17.522 Atomic orbital electron populations 1.24061 0.95155 1.00918 1.07253 1.22516 0.93850 0.99410 0.94696 1.18220 0.85049 0.86513 0.99070 1.43605 1.56641 1.09421 1.05959 1.19595 1.18228 1.25852 0.80626 0.88377 1.25497 0.94399 0.96738 1.00411 1.69925 1.16382 1.31271 1.32078 0.85874 0.78572 0.78200 0.82113 1.19299 1.20735 1.20797 1.19679 0.84110 0.85343 0.85479 1.90529 1.50659 1.20209 1.84489 1.22436 0.96784 0.99337 0.95558 0.88564 1.22552 0.99741 0.99182 0.93468 1.22636 0.90776 0.92408 0.97637 1.48438 1.31681 1.43621 1.10679 1.17966 0.79616 0.81189 0.85485 1.90796 1.45783 1.31807 1.72579 1.19968 0.98212 1.00880 0.93837 1.21315 0.95958 0.97180 0.93677 1.21143 0.99986 0.98963 0.94834 1.21384 0.94496 0.96157 0.99874 1.21170 0.98496 1.00695 0.94449 1.22866 0.99811 0.95872 0.95787 1.22668 0.94775 1.03828 0.79280 0.79025 0.88575 0.92215 0.92025 0.89593 0.89050 0.90367 0.90421 0.84724 0.85491 0.85849 0.85527 0.82048 0.88347 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.64 18.48 29.55 0.55 -5.10 16 2 C -0.10 -2.33 7.44 -37.12 -0.28 -2.60 16 3 C 0.23 5.10 4.76 -6.83 -0.03 5.07 16 4 N -0.44 -10.66 2.58 -117.93 -0.30 -10.97 16 5 C -0.32 -8.44 9.12 -14.93 -0.14 -8.57 16 6 H 0.10 2.74 7.54 -52.49 -0.40 2.35 16 7 C 0.03 0.88 5.18 -17.47 -0.09 0.79 16 8 N -0.86 -22.38 8.57 55.50 0.48 -21.91 16 9 Si 0.93 20.50 29.56 -169.99 -5.02 15.47 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.47 10.69 7.03 -10.98 -0.08 10.61 16 14 O -0.58 -14.97 15.57 5.55 0.09 -14.88 16 15 C -0.12 -2.07 2.45 -89.63 -0.22 -2.28 16 16 H 0.10 1.48 7.57 -51.92 -0.39 1.09 16 17 C -0.11 -1.57 6.03 -24.90 -0.15 -1.72 16 18 C 0.09 1.04 4.87 -3.06 -0.01 1.02 16 19 N -0.61 -9.48 3.33 -176.26 -0.59 -10.06 16 20 C 0.57 9.33 7.81 -12.33 -0.10 9.24 16 21 O -0.53 -10.59 16.60 5.32 0.09 -10.50 16 22 C -0.13 -1.66 5.87 -104.97 -0.62 -2.27 16 23 C -0.06 -0.75 9.59 -39.18 -0.38 -1.12 16 24 C -0.13 -1.21 10.03 -39.64 -0.40 -1.61 16 25 C -0.10 -0.83 10.04 -39.49 -0.40 -1.23 16 26 C -0.13 -1.12 10.03 -39.64 -0.40 -1.51 16 27 C -0.13 -1.31 8.62 -39.19 -0.34 -1.65 16 28 C 0.12 2.11 4.40 -2.53 -0.01 2.10 16 29 H 0.19 3.76 7.80 -54.08 -0.42 3.34 16 30 H 0.10 2.18 7.33 -51.93 -0.38 1.80 16 31 H 0.06 1.10 5.94 -51.93 -0.31 0.79 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.09 1.46 7.50 -51.93 -0.39 1.07 16 35 H 0.08 0.80 6.76 -51.93 -0.35 0.45 16 36 H 0.08 0.73 6.72 -51.93 -0.35 0.38 16 37 H 0.13 1.64 7.66 -52.49 -0.40 1.24 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.16 1.44 2.73 -58.48 -0.16 1.28 16 42 H 0.10 1.92 4.76 -51.93 -0.25 1.68 16 43 H 0.08 1.57 7.94 -51.93 -0.41 1.16 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -32.79 350.13 -8.10 -40.89 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.04 Total: 7.53 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -3.08 Total: -0.85 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.41 Total: -42.94 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.17 Total: -25.38 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.79 -8.10 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861520730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.764 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds