Wall clock time and date at job start Tue Mar 31 2020 15:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47358 * 168.25755 * 3 2 1 5 5 C 1.37100 * 119.99825 * 270.11348 * 4 3 2 6 6 H 1.08002 * 119.99750 * 210.12787 * 5 4 3 7 7 C 1.38949 * 120.00034 * 30.13825 * 5 4 3 8 8 N 1.31409 * 120.00150 * 6.58652 * 7 5 4 9 9 Si 1.86803 * 119.99814 * 186.59526 * 7 5 4 10 10 H 1.48496 * 109.47171 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46991 * 119.99610 * 9 7 5 12 12 H 1.48502 * 109.46937 * 239.99410 * 9 7 5 13 13 C 1.34778 * 120.00089 * 90.10626 * 4 3 2 14 14 O 1.21288 * 119.99948 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00017 * 0.02562 * 13 4 3 16 16 H 1.09008 * 110.91158 * 62.44501 * 15 13 4 17 17 C 1.55148 * 111.00488 * 186.34682 * 15 13 4 18 18 C 1.54333 * 103.02052 * 153.38434 * 17 15 13 19 19 N 1.47023 * 107.26577 * 338.13782 * 18 17 15 20 20 C 1.34778 * 125.64907 * 178.85344 * 19 18 17 21 21 O 1.21549 * 119.99743 * 184.76900 * 20 19 18 22 22 C 1.47846 * 119.99821 * 4.76648 * 20 19 18 23 23 C 1.39578 * 120.13835 * 173.92271 * 22 20 19 24 24 C 1.37965 * 119.84828 * 179.97438 * 23 22 20 25 25 C 1.38359 * 120.14279 * 0.02562 * 24 23 22 26 26 C 1.38358 * 120.29758 * 0.23598 * 25 24 23 27 27 C 1.37957 * 120.13948 * 359.48720 * 26 25 24 28 28 C 1.47427 * 108.70174 * 358.58654 * 19 18 17 29 29 H 4.40646 * 5.51392 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.47517 * 48.25525 * 3 2 1 31 31 H 1.08997 * 109.47386 * 288.25657 * 3 2 1 32 32 H 0.97001 * 119.99752 * 180.02562 * 8 7 5 33 33 H 1.09008 * 110.71852 * 271.93967 * 17 15 13 34 34 H 1.08997 * 110.72380 * 35.21040 * 17 15 13 35 35 H 1.09005 * 109.98948 * 218.66574 * 18 17 15 36 36 H 1.08998 * 109.78521 * 97.49725 * 18 17 15 37 37 H 1.07994 * 120.07538 * 359.95602 * 23 22 20 38 38 H 1.07996 * 119.92647 * 179.97438 * 24 23 22 39 39 H 1.08005 * 119.84761 * 179.97438 * 25 24 23 40 40 H 1.07993 * 119.92755 * 179.74741 * 26 25 24 41 41 H 1.08007 * 120.07131 * 180.25407 * 27 26 25 42 42 H 1.09000 * 110.36455 * 143.19235 * 28 19 18 43 43 H 1.08992 * 110.36646 * 265.51880 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3532 -0.2811 5 6 3.3598 1.7451 -1.5753 6 1 4.1256 2.4751 -1.7924 7 6 2.6037 1.2033 -2.6075 8 7 1.5882 0.4153 -2.3344 9 14 3.0310 1.5950 -4.3833 10 1 4.2084 2.4991 -4.4213 11 1 3.3490 0.3367 -5.1050 12 1 1.8748 2.2609 -5.0353 13 6 3.3600 2.2122 0.7325 14 8 3.7634 3.3321 0.4998 15 6 3.1119 1.7812 2.1551 16 1 3.7630 0.9511 2.4294 17 6 3.2853 2.9714 3.1351 18 6 2.3764 2.5815 4.3199 19 7 1.3908 1.6148 3.8142 20 6 0.4307 1.0160 4.5464 21 8 -0.2767 0.1658 4.0421 22 6 0.2380 1.3931 5.9629 23 6 -0.8336 0.8696 6.6880 24 6 -1.0074 1.2252 8.0096 25 6 -0.1227 2.0991 8.6161 26 6 0.9385 2.6259 7.9015 27 6 1.1270 2.2740 6.5809 28 6 1.6227 1.4139 2.3722 29 1 -1.0503 -0.0004 0.0003 30 1 3.0096 -0.6834 -0.7667 31 1 3.0094 -0.3211 0.9759 32 1 1.0606 0.0368 -3.0551 33 1 4.3236 3.0593 3.4552 34 1 2.9413 3.8997 2.6791 35 1 1.8659 3.4646 4.7043 36 1 2.9739 2.1237 5.1082 37 1 -1.5252 0.1880 6.2154 38 1 -1.8364 0.8212 8.5717 39 1 -0.2635 2.3746 9.6509 40 1 1.6231 3.3106 8.3797 41 1 1.9581 2.6827 6.0252 42 1 1.4451 0.3732 2.1009 43 1 0.9803 2.0737 1.7892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861520730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:08 Heat of formation + Delta-G solvation = 44.168452 kcal Electronic energy + Delta-G solvation = -27649.525657 eV Core-core repulsion = 23855.492130 eV Total energy + Delta-G solvation = -3794.033527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83384 -40.67188 -39.19798 -38.20698 -37.13507 -34.20181 -33.24947 -33.10328 -31.90335 -31.74871 -30.13392 -28.17210 -26.91611 -25.92935 -23.91999 -23.43352 -22.72819 -21.04051 -20.50924 -19.63783 -18.55353 -18.38402 -18.21892 -17.42785 -17.14662 -16.72391 -16.25124 -16.03429 -15.89115 -15.47660 -15.27517 -15.04547 -14.66617 -14.55829 -14.33774 -14.29329 -14.11945 -13.69675 -13.56434 -13.41505 -13.33627 -12.87024 -12.84251 -12.52573 -12.30858 -12.24485 -12.08687 -11.86662 -11.53360 -11.23290 -11.07807 -10.85908 -10.59824 -10.25915 -10.01395 -9.90955 -9.75779 -9.70365 -8.15989 -6.04967 -0.10902 0.45623 1.34976 1.41037 1.53471 1.69971 1.80862 1.97627 2.16188 2.34865 2.51485 2.91908 3.07175 3.11515 3.32458 3.52883 3.68953 3.89308 3.95479 4.00187 4.07420 4.15160 4.19888 4.22547 4.32027 4.50272 4.53200 4.56162 4.61893 4.76008 4.80561 4.85122 4.89478 5.04359 5.08695 5.11824 5.25408 5.42526 5.44090 5.47137 5.47491 5.54449 6.00381 6.11213 6.40394 6.43472 7.01276 7.13470 7.28334 7.38850 7.93938 8.69646 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.003218 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.982374 B = 8699.993222 C = 9602.915294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.117 4.117 3 C 0.239 3.761 4 N -0.452 5.452 5 C -0.345 4.345 6 H 0.076 0.924 7 C 0.000 4.000 8 N -0.873 5.873 9 Si 0.987 3.013 10 H -0.271 1.271 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.461 3.539 14 O -0.613 6.613 15 C -0.112 4.112 16 H 0.125 0.875 17 C -0.105 4.105 18 C 0.090 3.910 19 N -0.611 5.611 20 C 0.562 3.438 21 O -0.583 6.583 22 C -0.153 4.153 23 C -0.084 4.084 24 C -0.132 4.132 25 C -0.092 4.092 26 C -0.126 4.126 27 C -0.125 4.125 28 C 0.127 3.873 29 H 0.210 0.790 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.269 0.731 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.082 0.918 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 1.327 22.162 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.119 4.119 3 C 0.116 3.884 4 N -0.170 5.170 5 C -0.473 4.473 6 H 0.094 0.906 7 C -0.203 4.203 8 N -0.509 5.509 9 Si 0.811 3.189 10 H -0.195 1.195 11 H -0.193 1.193 12 H -0.210 1.210 13 C 0.250 3.750 14 O -0.498 6.498 15 C -0.134 4.134 16 H 0.143 0.857 17 C -0.143 4.143 18 C -0.031 4.031 19 N -0.343 5.343 20 C 0.354 3.646 21 O -0.464 6.464 22 C -0.156 4.156 23 C -0.103 4.103 24 C -0.149 4.149 25 C -0.110 4.110 26 C -0.144 4.144 27 C -0.142 4.142 28 C 0.004 3.996 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.194 0.806 42 H 0.100 0.900 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.381 1.271 21.666 21.707 hybrid contribution -0.610 -0.123 -1.860 1.961 sum -0.991 1.148 19.806 19.864 Atomic orbital electron populations 1.24646 0.96016 1.00590 1.07126 1.22870 0.94483 0.99687 0.94851 1.18278 0.84592 0.85138 1.00348 1.43803 1.56906 1.10614 1.05726 1.19558 1.18762 1.26517 0.82448 0.90574 1.26169 0.94134 0.96395 1.03630 1.70056 1.16583 1.31367 1.32927 0.84963 0.77911 0.78271 0.77711 1.19526 1.19344 1.21020 1.20564 0.82391 0.84664 0.87375 1.90492 1.51989 1.21753 1.85615 1.22389 0.96597 1.01861 0.92524 0.85747 1.22586 1.02071 0.96528 0.93147 1.22938 0.90052 0.92795 0.97307 1.48471 1.32339 1.44168 1.09341 1.18640 0.78761 0.80363 0.86858 1.90754 1.47596 1.34161 1.73895 1.19818 1.00299 1.03473 0.91960 1.21358 0.95966 0.97816 0.95125 1.21427 1.00955 0.98930 0.93633 1.21856 0.93315 0.94416 1.01371 1.21606 0.98842 1.00401 0.93523 1.23013 0.99424 0.94982 0.96798 1.22236 0.94556 1.01808 0.80987 0.77272 0.89826 0.88834 0.92042 0.86600 0.91367 0.88065 0.86519 0.86547 0.83276 0.82407 0.82064 0.80639 0.90014 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.13 18.48 74.32 1.37 -10.75 16 2 C -0.12 -5.47 7.44 31.13 0.23 -5.24 16 3 C 0.24 10.64 4.76 84.57 0.40 11.05 16 4 N -0.45 -22.70 2.58 -645.42 -1.66 -24.36 16 5 C -0.35 -19.12 9.12 84.04 0.77 -18.35 16 6 H 0.08 4.46 7.54 -2.91 -0.02 4.44 16 7 C 0.00 -0.02 5.18 84.93 0.44 0.42 16 8 N -0.87 -46.37 8.57 21.66 0.19 -46.19 16 9 Si 0.99 42.81 29.56 68.60 2.03 44.84 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.46 21.58 7.03 87.66 0.62 22.19 16 14 O -0.61 -32.79 15.57 -3.06 -0.05 -32.84 16 15 C -0.11 -3.82 2.45 -10.15 -0.02 -3.84 16 16 H 0.12 3.58 7.57 -2.38 -0.02 3.56 16 17 C -0.11 -2.77 6.03 31.78 0.19 -2.58 16 18 C 0.09 1.86 4.87 86.73 0.42 2.28 16 19 N -0.61 -18.60 3.33 -829.84 -2.76 -21.36 16 20 C 0.56 18.66 7.81 86.79 0.68 19.34 16 21 O -0.58 -24.38 16.60 -3.87 -0.06 -24.44 16 22 C -0.15 -3.85 5.87 -20.09 -0.12 -3.97 16 23 C -0.08 -1.96 9.59 22.53 0.22 -1.74 16 24 C -0.13 -2.09 10.03 22.23 0.22 -1.86 16 25 C -0.09 -1.08 10.04 22.33 0.22 -0.86 16 26 C -0.13 -1.54 10.03 22.23 0.22 -1.31 16 27 C -0.12 -2.16 8.62 22.53 0.19 -1.97 16 28 C 0.13 4.71 4.40 86.86 0.38 5.09 16 29 H 0.21 8.45 7.80 -4.40 -0.03 8.41 16 30 H 0.08 3.90 7.33 -2.39 -0.02 3.88 16 31 H 0.09 3.44 5.94 -2.39 -0.01 3.42 16 32 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.12 2.37 8.14 -2.38 -0.02 2.36 16 34 H 0.07 2.14 7.50 -2.39 -0.02 2.12 16 35 H 0.10 1.70 6.76 -2.38 -0.02 1.69 16 36 H 0.12 1.61 6.72 -2.39 -0.02 1.59 16 37 H 0.12 3.03 7.66 -2.91 -0.02 3.01 16 38 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.18 2.34 2.73 -8.54 -0.02 2.32 16 42 H 0.08 3.30 4.76 -2.39 -0.01 3.29 16 43 H 0.04 1.68 7.94 -2.39 -0.02 1.66 16 Total: -1.00 -76.63 350.13 5.15 -71.48 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 1.03 Total: 24.97 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.44 Total: 7.89 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.24 Total: -91.91 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -0.11 Total: -57.28 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -76.63 5.15 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861520730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.648 kcal (2) G-P(sol) polarization free energy of solvation -76.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds