Wall clock time and date at job start Tue Mar 31 2020 15:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46709 * 2 1 4 4 F 1.39897 * 109.47386 * 239.99789 * 2 1 3 5 5 C 1.50700 * 109.46707 * 119.99588 * 2 1 3 6 6 O 1.21282 * 120.00058 * 355.34528 * 5 2 1 7 7 N 1.34778 * 119.99546 * 175.34613 * 5 2 1 8 8 C 1.46924 * 120.63325 * 354.19892 * 7 5 2 9 9 C 1.53195 * 108.77390 * 233.61087 * 8 7 5 10 10 C 1.53042 * 109.31265 * 305.36192 * 9 8 7 11 11 H 1.08999 * 109.44976 * 301.35725 * 10 9 8 12 12 C 1.52996 * 109.46297 * 181.38735 * 10 9 8 13 13 F 1.39898 * 109.47098 * 299.93165 * 12 10 9 14 14 F 1.39896 * 109.46925 * 59.93076 * 12 10 9 15 15 F 1.39896 * 109.47150 * 179.97438 * 12 10 9 16 16 C 1.53050 * 109.53794 * 61.36374 * 10 9 8 17 17 H 1.08999 * 109.52055 * 178.66854 * 16 10 9 18 18 N 1.46504 * 109.49308 * 58.58901 * 16 10 9 19 19 C 1.36930 * 119.99827 * 155.16077 * 18 16 10 20 20 H 1.08001 * 119.99963 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00355 * 179.97438 * 19 18 16 22 22 N 1.31612 * 120.00302 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99553 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47352 * 89.99582 * 23 21 19 25 25 H 1.48498 * 109.47157 * 209.99632 * 23 21 19 26 26 H 1.48503 * 109.47141 * 329.99804 * 23 21 19 27 27 C 1.46929 * 120.62739 * 174.19932 * 7 5 2 28 28 H 1.08993 * 109.47804 * 300.00167 * 1 2 3 29 29 H 1.09003 * 109.47074 * 60.00561 * 1 2 3 30 30 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46776 * 186.35383 * 3 2 1 32 32 H 1.08999 * 109.47298 * 306.34882 * 3 2 1 33 33 H 1.08993 * 109.47455 * 66.35210 * 3 2 1 34 34 H 1.08997 * 109.59139 * 113.82328 * 8 7 5 35 35 H 1.09000 * 109.70017 * 353.46046 * 8 7 5 36 36 H 1.08998 * 109.49906 * 185.41406 * 9 8 7 37 37 H 1.08996 * 109.50008 * 65.31453 * 9 8 7 38 38 H 0.96994 * 120.00152 * 335.15763 * 18 16 10 39 39 H 0.97003 * 119.99855 * 180.02562 * 22 21 19 40 40 H 1.09003 * 109.58968 * 6.60014 * 27 7 5 41 41 H 1.09002 * 109.58827 * 246.17743 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0322 -0.7103 1.2305 6 8 1.2473 -1.0968 2.0705 7 7 3.3537 -0.9161 1.3976 8 6 4.3058 -0.5688 0.3339 9 6 5.1654 -1.7977 0.0210 10 6 5.8192 -2.2996 1.3105 11 1 6.4273 -1.5046 1.7423 12 6 6.7060 -3.5061 0.9962 13 9 5.9257 -4.5267 0.4425 14 9 7.6981 -3.1306 0.0841 15 9 7.3043 -3.9647 2.1747 16 6 4.7340 -2.7105 2.3083 17 1 5.2001 -3.0901 3.2176 18 7 3.8954 -3.7555 1.7157 19 6 3.2152 -4.6275 2.5233 20 1 3.2973 -4.5450 3.5970 21 6 2.4202 -5.6173 1.9619 22 7 1.7661 -6.4550 2.7381 23 14 2.2790 -5.7603 0.1047 24 1 3.3376 -6.6691 -0.4038 25 1 0.9447 -6.3075 -0.2495 26 1 2.4423 -4.4179 -0.5089 27 6 3.8695 -1.4921 2.6470 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1240 1.4447 -0.1137 32 1 1.5867 1.9881 -0.8277 33 1 1.7724 1.9225 0.9413 34 1 4.9448 0.2486 0.6679 35 1 3.7624 -0.2656 -0.5610 36 1 5.9389 -1.5271 -0.6977 37 1 4.5374 -2.5837 -0.3983 38 1 3.8220 -3.8297 0.7514 39 1 1.2109 -7.1469 2.3457 40 1 3.0363 -1.7995 3.2790 41 1 4.4729 -0.7500 3.1698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998218424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:00 Heat of formation + Delta-G solvation = -210.285911 kcal Electronic energy + Delta-G solvation = -31312.933337 eV Core-core repulsion = 26535.239876 eV Total energy + Delta-G solvation = -4777.693461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.71532 -48.06331 -47.26589 -47.07408 -40.02242 -37.84631 -34.51327 -33.60872 -32.85547 -31.34201 -29.38460 -27.67063 -27.17579 -24.39979 -23.59066 -22.77781 -22.17037 -20.03394 -18.97006 -18.17682 -17.96125 -17.86826 -17.41341 -16.82220 -16.20223 -15.97606 -15.21078 -14.95489 -14.58215 -14.49679 -14.20801 -13.95955 -13.81271 -13.60048 -13.43130 -13.29680 -13.27328 -13.21507 -13.15125 -12.77166 -12.63094 -12.53422 -12.45723 -12.35616 -12.18646 -11.93023 -11.74264 -11.27964 -11.18703 -11.01003 -10.86875 -10.62384 -10.44453 -10.12421 -9.54760 -9.46251 -9.08027 -8.43482 -7.26313 -5.73451 -3.10028 2.65263 3.01078 3.13152 3.42481 3.44909 3.49036 4.07582 4.15844 4.21081 4.28994 4.36505 4.55006 4.63801 4.66657 4.81670 4.98635 5.08829 5.12546 5.23349 5.27429 5.34277 5.37527 5.49305 5.55576 5.60233 5.67114 5.74055 5.78352 5.87455 5.91566 6.09287 6.13573 6.22445 6.43330 6.74021 7.51827 7.96496 8.28907 8.43492 9.19507 9.92752 10.08106 11.44481 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.007266 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.977625 B = 3852.596730 C = 5219.935371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 C -0.174 4.174 4 F -0.192 7.192 5 C 0.501 3.499 6 O -0.505 6.505 7 N -0.592 5.592 8 C 0.098 3.902 9 C -0.134 4.134 10 C -0.143 4.143 11 H 0.114 0.886 12 C 0.458 3.542 13 F -0.165 7.165 14 F -0.196 7.196 15 F -0.182 7.182 16 C 0.170 3.830 17 H 0.083 0.917 18 N -0.735 5.735 19 C -0.242 4.242 20 H 0.092 0.908 21 C 0.015 3.985 22 N -0.929 5.929 23 Si 0.876 3.124 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.094 3.906 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.365 0.635 39 H 0.259 0.741 40 H 0.106 0.894 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 18.097 -6.878 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.078 3.922 3 C -0.232 4.232 4 F -0.173 7.173 5 C 0.285 3.715 6 O -0.379 6.379 7 N -0.325 5.325 8 C -0.026 4.026 9 C -0.173 4.173 10 C -0.163 4.163 11 H 0.132 0.868 12 C 0.404 3.596 13 F -0.147 7.147 14 F -0.177 7.177 15 F -0.164 7.164 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.110 0.890 21 C -0.181 4.181 22 N -0.576 5.576 23 Si 0.707 3.293 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.031 4.031 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.201 0.799 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.697 17.666 -6.249 19.900 hybrid contribution 0.133 -0.553 -1.566 1.666 sum 6.830 17.113 -7.815 20.015 Atomic orbital electron populations 1.22156 0.90957 1.04927 1.03492 1.21251 0.97003 0.92765 0.81136 1.22502 1.02941 0.93279 1.04462 1.92833 1.89525 1.82892 1.52045 1.20604 0.82658 0.80089 0.88122 1.90770 1.54291 1.48447 1.44400 1.47851 1.05522 1.61991 1.17166 1.22029 0.92168 0.96173 0.92181 1.21947 1.00024 0.99533 0.95754 1.22826 0.98029 0.94883 1.00582 0.86811 1.20425 0.79068 0.85994 0.74123 1.93236 1.73847 1.62066 1.85521 1.93126 1.64613 1.91435 1.68576 1.93160 1.84853 1.90458 1.47913 1.20557 0.89228 0.89690 0.94654 0.89950 1.42830 1.55479 1.34413 1.05158 1.18938 1.20561 1.06217 0.91427 0.89035 1.24556 0.99057 0.97780 0.96684 1.69685 1.34030 1.20414 1.33485 0.86678 0.77238 0.77633 0.87780 1.20883 1.21784 1.20472 1.22513 1.00187 0.94945 0.85465 0.89846 0.90967 0.90437 0.90481 0.90280 0.90072 0.91105 0.87768 0.89626 0.89835 0.79912 0.93092 0.87530 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.23 37.16 0.31 -1.67 16 2 C 0.10 1.32 1.20 -91.77 -0.11 1.21 16 3 C -0.17 -1.53 8.60 37.16 0.32 -1.21 16 4 F -0.19 -2.81 14.44 2.25 0.03 -2.78 16 5 C 0.50 8.54 6.78 -10.98 -0.07 8.47 16 6 O -0.51 -10.75 15.40 5.56 0.09 -10.67 16 7 N -0.59 -9.03 2.89 -172.77 -0.50 -9.53 16 8 C 0.10 1.13 4.82 -3.71 -0.02 1.11 16 9 C -0.13 -1.75 4.95 -26.61 -0.13 -1.88 16 10 C -0.14 -1.98 2.01 -90.57 -0.18 -2.17 16 11 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 12 C 0.46 7.36 2.69 37.16 0.10 7.46 16 13 F -0.17 -3.29 14.40 2.25 0.03 -3.26 16 14 F -0.20 -2.82 16.77 2.25 0.04 -2.79 16 15 F -0.18 -3.08 16.77 2.25 0.04 -3.04 16 16 C 0.17 3.00 2.45 -67.81 -0.17 2.83 16 17 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 18 N -0.73 -16.92 3.49 -53.31 -0.19 -17.11 16 19 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.02 0.47 5.50 -17.43 -0.10 0.37 16 22 N -0.93 -29.86 13.97 55.49 0.78 -29.09 16 23 Si 0.88 23.36 27.74 -169.99 -4.71 18.65 16 24 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 26 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 27 C 0.09 1.51 6.05 -3.71 -0.02 1.49 16 28 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 0.59 5.85 -51.93 -0.30 0.29 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 1.15 3.92 -51.93 -0.20 0.95 16 36 H 0.09 0.89 7.76 -51.93 -0.40 0.48 16 37 H 0.08 1.38 6.11 -51.93 -0.32 1.06 16 38 H 0.37 8.61 2.80 -40.82 -0.11 8.50 16 39 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 40 H 0.11 2.13 7.00 -51.93 -0.36 1.76 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -34.86 332.84 -4.69 -39.55 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.07 Total: 5.99 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.23 Total: 9.05 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.09 Total: -55.73 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 0.14 Total: -11.86 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.71 Total: 18.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.86 -4.69 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998218424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.734 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds