Wall clock time and date at job start Tue Mar 31 2020 15:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46709 * 2 1 4 4 F 1.39897 * 109.47386 * 239.99789 * 2 1 3 5 5 C 1.50700 * 109.46707 * 119.99588 * 2 1 3 6 6 O 1.21282 * 120.00058 * 355.34528 * 5 2 1 7 7 N 1.34778 * 119.99546 * 175.34613 * 5 2 1 8 8 C 1.46924 * 120.63325 * 354.19892 * 7 5 2 9 9 C 1.53195 * 108.77390 * 233.61087 * 8 7 5 10 10 C 1.53042 * 109.31265 * 305.36192 * 9 8 7 11 11 H 1.08999 * 109.44976 * 301.35725 * 10 9 8 12 12 C 1.52996 * 109.46297 * 181.38735 * 10 9 8 13 13 F 1.39898 * 109.47098 * 299.93165 * 12 10 9 14 14 F 1.39896 * 109.46925 * 59.93076 * 12 10 9 15 15 F 1.39896 * 109.47150 * 179.97438 * 12 10 9 16 16 C 1.53050 * 109.53794 * 61.36374 * 10 9 8 17 17 H 1.08999 * 109.52055 * 178.66854 * 16 10 9 18 18 N 1.46504 * 109.49308 * 58.58901 * 16 10 9 19 19 C 1.36930 * 119.99827 * 155.16077 * 18 16 10 20 20 H 1.08001 * 119.99963 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00355 * 179.97438 * 19 18 16 22 22 N 1.31612 * 120.00302 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99553 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47352 * 89.99582 * 23 21 19 25 25 H 1.48498 * 109.47157 * 209.99632 * 23 21 19 26 26 H 1.48503 * 109.47141 * 329.99804 * 23 21 19 27 27 C 1.46929 * 120.62739 * 174.19932 * 7 5 2 28 28 H 1.08993 * 109.47804 * 300.00167 * 1 2 3 29 29 H 1.09003 * 109.47074 * 60.00561 * 1 2 3 30 30 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46776 * 186.35383 * 3 2 1 32 32 H 1.08999 * 109.47298 * 306.34882 * 3 2 1 33 33 H 1.08993 * 109.47455 * 66.35210 * 3 2 1 34 34 H 1.08997 * 109.59139 * 113.82328 * 8 7 5 35 35 H 1.09000 * 109.70017 * 353.46046 * 8 7 5 36 36 H 1.08998 * 109.49906 * 185.41406 * 9 8 7 37 37 H 1.08996 * 109.50008 * 65.31453 * 9 8 7 38 38 H 0.96994 * 120.00152 * 335.15763 * 18 16 10 39 39 H 0.97003 * 119.99855 * 180.02562 * 22 21 19 40 40 H 1.09003 * 109.58968 * 6.60014 * 27 7 5 41 41 H 1.09002 * 109.58827 * 246.17743 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0322 -0.7103 1.2305 6 8 1.2473 -1.0968 2.0705 7 7 3.3537 -0.9161 1.3976 8 6 4.3058 -0.5688 0.3339 9 6 5.1654 -1.7977 0.0210 10 6 5.8192 -2.2996 1.3105 11 1 6.4273 -1.5046 1.7423 12 6 6.7060 -3.5061 0.9962 13 9 5.9257 -4.5267 0.4425 14 9 7.6981 -3.1306 0.0841 15 9 7.3043 -3.9647 2.1747 16 6 4.7340 -2.7105 2.3083 17 1 5.2001 -3.0901 3.2176 18 7 3.8954 -3.7555 1.7157 19 6 3.2152 -4.6275 2.5233 20 1 3.2973 -4.5450 3.5970 21 6 2.4202 -5.6173 1.9619 22 7 1.7661 -6.4550 2.7381 23 14 2.2790 -5.7603 0.1047 24 1 3.3376 -6.6691 -0.4038 25 1 0.9447 -6.3075 -0.2495 26 1 2.4423 -4.4179 -0.5089 27 6 3.8695 -1.4921 2.6470 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1240 1.4447 -0.1137 32 1 1.5867 1.9881 -0.8277 33 1 1.7724 1.9225 0.9413 34 1 4.9448 0.2486 0.6679 35 1 3.7624 -0.2656 -0.5610 36 1 5.9389 -1.5271 -0.6977 37 1 4.5374 -2.5837 -0.3983 38 1 3.8220 -3.8297 0.7514 39 1 1.2109 -7.1469 2.3457 40 1 3.0363 -1.7995 3.2790 41 1 4.4729 -0.7500 3.1698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998218424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:00 Heat of formation + Delta-G solvation = -234.396835 kcal Electronic energy + Delta-G solvation = -31313.978865 eV Core-core repulsion = 26535.239876 eV Total energy + Delta-G solvation = -4778.738989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.00532 -49.13282 -48.50314 -48.45914 -41.27569 -39.19130 -36.11488 -34.76115 -34.26599 -33.10312 -30.97548 -28.63619 -28.27012 -26.01886 -24.89367 -24.19288 -23.40290 -21.30908 -20.27014 -19.96288 -19.23196 -19.18487 -18.79959 -18.02916 -17.46134 -17.04649 -16.70470 -16.36932 -16.11664 -15.74643 -15.50173 -15.41571 -15.10230 -14.95931 -14.89240 -14.64834 -14.62546 -14.45593 -14.39544 -14.22925 -13.93570 -13.74046 -13.42798 -13.34346 -13.18462 -13.09221 -13.06150 -12.98061 -12.78586 -12.31874 -12.25542 -12.19460 -11.83162 -11.71259 -11.63991 -11.16822 -10.67942 -9.85535 -9.21597 -8.06511 -5.36686 1.24500 1.27851 1.31687 1.39688 1.83122 1.94576 2.40556 2.85802 2.99336 3.10737 3.13497 3.27188 3.41979 3.52991 3.59777 3.74139 3.78816 3.84526 4.00174 4.19260 4.27095 4.52348 4.56712 4.58695 4.63603 4.66107 4.71131 4.72512 4.77783 4.93278 5.05431 5.07750 5.11806 5.15971 5.52895 5.71942 6.17025 6.32214 7.03870 7.05553 7.78857 7.93854 9.15511 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.007266 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.977625 B = 3852.596730 C = 5219.935371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 C -0.165 4.165 4 F -0.200 7.200 5 C 0.486 3.514 6 O -0.566 6.566 7 N -0.592 5.592 8 C 0.093 3.907 9 C -0.135 4.135 10 C -0.129 4.129 11 H 0.167 0.833 12 C 0.453 3.547 13 F -0.194 7.194 14 F -0.182 7.182 15 F -0.191 7.191 16 C 0.159 3.841 17 H 0.075 0.925 18 N -0.740 5.740 19 C -0.211 4.211 20 H 0.062 0.938 21 C -0.057 4.057 22 N -0.981 5.981 23 Si 0.935 3.065 24 H -0.278 1.278 25 H -0.299 1.299 26 H -0.265 1.265 27 C 0.101 3.899 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.044 0.956 38 H 0.365 0.635 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 21.995 -8.998 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.078 3.922 3 C -0.222 4.222 4 F -0.181 7.181 5 C 0.272 3.728 6 O -0.444 6.444 7 N -0.323 5.323 8 C -0.028 4.028 9 C -0.173 4.173 10 C -0.149 4.149 11 H 0.185 0.815 12 C 0.399 3.601 13 F -0.175 7.175 14 F -0.163 7.163 15 F -0.172 7.172 16 C 0.050 3.950 17 H 0.093 0.907 18 N -0.384 5.384 19 C -0.342 4.342 20 H 0.080 0.920 21 C -0.248 4.248 22 N -0.632 5.632 23 Si 0.765 3.235 24 H -0.204 1.204 25 H -0.226 1.226 26 H -0.191 1.191 27 C -0.024 4.024 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.063 0.937 38 H 0.200 0.800 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.227 21.636 -8.408 24.979 hybrid contribution -0.506 -1.712 -0.817 1.964 sum 8.721 19.924 -9.225 23.624 Atomic orbital electron populations 1.22195 0.91067 1.03109 1.05257 1.21391 0.97076 0.94774 0.78919 1.22517 1.04183 0.89626 1.05907 1.92818 1.89624 1.83479 1.52167 1.21462 0.82869 0.79661 0.88801 1.90744 1.55878 1.51005 1.46768 1.48042 1.05805 1.60856 1.17611 1.22422 0.91867 0.96843 0.91628 1.22023 1.00615 0.98941 0.95691 1.22863 0.96703 0.95058 1.00261 0.81506 1.20809 0.79443 0.85957 0.73938 1.93182 1.74739 1.63620 1.85983 1.93149 1.64007 1.91129 1.68052 1.93148 1.84999 1.90683 1.48379 1.20846 0.89822 0.88867 0.95515 0.90686 1.42819 1.55788 1.35130 1.04665 1.18939 1.18805 1.05689 0.90747 0.91984 1.25244 1.00246 0.98590 1.00744 1.69843 1.36210 1.21939 1.35207 0.85701 0.76659 0.78074 0.83109 1.20384 1.22605 1.19061 1.22269 0.98625 0.95526 0.85973 0.89565 0.87683 0.94057 0.88601 0.87796 0.89457 0.85830 0.86850 0.85807 0.93718 0.79978 0.93662 0.92340 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 8.23 71.98 0.59 -3.24 16 2 C 0.10 2.42 1.20 -11.54 -0.01 2.41 16 3 C -0.17 -2.16 8.60 71.98 0.62 -1.54 16 4 F -0.20 -5.34 14.44 44.97 0.65 -4.69 16 5 C 0.49 16.15 6.78 87.66 0.59 16.74 16 6 O -0.57 -24.97 15.40 -3.03 -0.05 -25.02 16 7 N -0.59 -16.49 2.89 -818.90 -2.37 -18.85 16 8 C 0.09 1.67 4.82 86.36 0.42 2.09 16 9 C -0.13 -2.90 4.95 30.67 0.15 -2.75 16 10 C -0.13 -3.07 2.01 -10.76 -0.02 -3.09 16 11 H 0.17 2.30 8.14 -2.39 -0.02 2.28 16 12 C 0.45 13.35 2.69 71.98 0.19 13.54 16 13 F -0.19 -7.51 14.40 44.97 0.65 -6.86 16 14 F -0.18 -4.56 16.77 44.97 0.75 -3.80 16 15 F -0.19 -6.09 16.77 44.97 0.75 -5.33 16 16 C 0.16 5.36 2.45 45.07 0.11 5.47 16 17 H 0.08 2.65 7.70 -2.39 -0.02 2.63 16 18 N -0.74 -34.30 3.49 -322.56 -1.13 -35.43 16 19 C -0.21 -12.33 10.41 84.03 0.87 -11.46 16 20 H 0.06 3.94 8.06 -2.91 -0.02 3.91 16 21 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 22 N -0.98 -66.25 13.97 21.65 0.30 -65.95 16 23 Si 0.94 50.06 27.74 68.60 1.90 51.97 16 24 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.30 -16.22 7.11 99.48 0.71 -15.52 16 26 H -0.27 -13.35 6.52 99.48 0.65 -12.70 16 27 C 0.10 3.08 6.05 86.36 0.52 3.61 16 28 H 0.09 2.00 8.05 -2.39 -0.02 1.98 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.10 0.90 5.85 -2.38 -0.01 0.88 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 1.92 3.92 -2.39 -0.01 1.91 16 36 H 0.12 1.80 7.76 -2.39 -0.02 1.78 16 37 H 0.04 1.35 6.11 -2.39 -0.01 1.33 16 38 H 0.36 17.13 2.80 -92.71 -0.26 16.87 16 39 H 0.25 16.53 8.31 -92.71 -0.77 15.76 16 40 H 0.06 2.40 7.00 -2.39 -0.02 2.38 16 41 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -84.06 332.84 6.74 -77.32 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.76 Total: 17.98 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 4.51 Total: 18.68 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -3.19 Total: -120.23 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 9 Polarization: -23.49 SS G_CDS: 2.81 Total: -20.69 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.90 Total: 51.97 kcal Total: -84.06 6.74 -77.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998218424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.081 kcal (2) G-P(sol) polarization free energy of solvation -84.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds