Wall clock time and date at job start Tue Mar 31 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39716 * 119.99842 * 299.36047 * 3 2 1 5 5 C 1.37601 * 120.00498 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99418 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00228 * 180.02562 * 6 5 4 8 8 O 1.21577 * 119.99811 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00394 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00205 * 179.97438 * 9 7 6 11 11 H 1.08991 * 110.97144 * 322.30144 * 10 9 7 12 12 C 1.55007 * 111.10524 * 86.45598 * 10 9 7 13 13 O 1.43913 * 105.18564 * 81.91269 * 12 10 9 14 14 C 1.42391 * 109.55135 * 24.29624 * 13 12 10 15 15 C 1.52705 * 116.14240 * 129.84446 * 14 13 12 16 16 N 1.47216 * 87.79590 * 90.69858 * 15 14 13 17 17 C 1.36943 * 135.97453 * 206.20308 * 16 15 14 18 18 H 1.07997 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99737 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00533 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47449 * 89.99500 * 21 19 17 23 23 H 1.48498 * 109.47239 * 210.00092 * 21 19 17 24 24 H 1.48506 * 109.46790 * 330.00058 * 21 19 17 25 25 C 1.47207 * 88.05086 * 26.45746 * 16 15 14 26 26 C 1.53652 * 108.53755 * 358.08376 * 14 13 12 27 27 C 1.39742 * 119.99401 * 0.27331 * 6 5 4 28 28 C 1.37605 * 119.99509 * 359.42677 * 27 6 5 29 29 H 4.51948 * 14.06508 * 359.97438 * 4 2 1 30 30 H 1.07996 * 119.99760 * 0.02658 * 4 3 2 31 31 H 1.07996 * 119.99986 * 179.97438 * 5 4 3 32 32 H 0.97008 * 119.99628 * 359.97438 * 9 7 6 33 33 H 1.09006 * 110.30603 * 322.98906 * 12 10 9 34 34 H 1.09000 * 110.38461 * 200.88666 * 12 10 9 35 35 H 1.08999 * 113.49597 * 335.97033 * 15 14 13 36 36 H 1.09001 * 113.55962 * 205.43974 * 15 14 13 37 37 H 0.97001 * 119.99911 * 180.02562 * 20 19 17 38 38 H 1.08998 * 113.50153 * 88.27916 * 25 16 15 39 39 H 1.08999 * 113.49942 * 218.81112 * 25 16 15 40 40 H 1.09000 * 110.93314 * 97.30301 * 26 14 13 41 41 H 1.09003 * 110.93393 * 220.96388 * 26 14 13 42 42 H 1.07995 * 120.00001 * 179.71999 * 27 6 5 43 43 H 1.08004 * 119.99594 * 180.31814 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3048 -0.5923 1.0546 5 6 4.6808 -0.5913 1.0550 6 6 5.3793 0.0024 0.0002 7 6 6.8561 0.0031 0.0001 8 8 7.4643 -0.5133 0.9176 9 7 7.5298 0.5761 -1.0168 10 6 8.9948 0.5772 -1.0165 11 1 9.3846 0.7249 -0.0095 12 6 9.5541 -0.7240 -1.6465 13 8 9.5076 -0.5048 -3.0681 14 6 9.5341 0.8935 -3.3357 15 6 10.5622 1.3626 -4.3628 16 7 9.5309 1.1752 -5.3965 17 6 9.5201 0.9113 -6.7402 18 1 10.4510 0.7924 -7.2746 19 6 8.3127 0.7976 -7.4155 20 7 7.1781 0.9430 -6.7643 21 14 8.2980 0.4382 -9.2486 22 1 8.2728 -1.0307 -9.4649 23 1 7.0924 1.0499 -9.8632 24 1 9.5171 1.0099 -9.8748 25 6 8.5164 1.4023 -4.3543 26 6 9.5540 1.6469 -1.9967 27 6 4.6802 0.6000 -1.0519 28 6 3.3042 0.5934 -1.0551 29 1 -1.0500 0.0001 0.0007 30 1 2.7650 -1.0515 1.8695 31 1 5.2209 -1.0493 1.8704 32 1 7.0446 0.9878 -1.7490 33 1 8.9293 -1.5748 -1.3745 34 1 10.5814 -0.8913 -1.3230 35 1 11.4108 0.6868 -4.4681 36 1 10.8642 2.4019 -4.2336 37 1 6.3344 0.8632 -7.2362 38 1 8.2568 2.4526 -4.2219 39 1 7.6413 0.7600 -4.4523 40 1 10.5706 1.9308 -1.7247 41 1 8.9034 2.5208 -2.0319 42 1 5.2199 1.0628 -1.8649 43 1 2.7639 1.0507 -1.8708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053889549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:23 Heat of formation + Delta-G solvation = 71.728457 kcal Electronic energy + Delta-G solvation = -26844.056490 eV Core-core repulsion = 23051.218054 eV Total energy + Delta-G solvation = -3792.838435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63165 -39.71703 -38.43133 -36.30315 -34.40058 -34.01899 -32.14068 -31.48633 -30.99620 -29.92666 -28.18811 -25.72483 -24.92166 -24.67923 -22.89553 -22.17849 -21.40695 -20.62024 -19.23875 -19.03472 -18.05702 -16.92423 -16.55507 -15.91616 -15.57073 -15.38118 -15.03095 -14.97750 -14.75707 -14.29234 -14.19594 -13.84522 -13.58024 -13.39741 -13.29110 -13.12089 -12.81759 -12.45168 -12.09216 -11.66821 -11.62250 -11.42611 -11.42476 -11.33100 -11.10832 -10.84161 -10.73987 -10.50176 -10.32106 -9.96861 -9.83116 -9.51454 -9.28684 -9.19853 -8.84821 -8.80296 -8.56889 -6.88426 -5.76399 -3.07280 0.29911 1.13131 2.32891 2.43141 3.04240 3.13764 3.40657 3.45167 3.46683 3.78792 3.92131 4.15699 4.43517 4.49781 4.58637 4.66025 4.71698 5.00671 5.04838 5.05305 5.21951 5.24477 5.26180 5.35374 5.45559 5.57274 5.63234 5.74690 5.81810 5.87526 5.91308 6.02051 6.05122 6.09971 6.14859 6.35892 6.43683 6.52641 6.56387 6.60402 6.87819 7.15261 7.20389 7.44439 7.50696 7.78125 7.98689 8.12461 9.04282 9.71225 10.63068 11.41797 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003406 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.239495 B = 8219.843802 C =10364.436618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.153 4.153 3 C 0.031 3.969 4 C -0.107 4.107 5 C -0.059 4.059 6 C -0.125 4.125 7 C 0.561 3.439 8 O -0.541 6.541 9 N -0.707 5.707 10 C 0.112 3.888 11 H 0.105 0.895 12 C 0.039 3.961 13 O -0.334 6.334 14 C 0.053 3.947 15 C 0.110 3.890 16 N -0.601 5.601 17 C -0.213 4.213 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.152 3.848 26 C -0.144 4.144 27 C -0.079 4.079 28 C -0.100 4.100 29 H 0.225 0.775 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.407 0.593 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.253 0.747 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 1.063 17.216 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C 0.030 3.970 4 C -0.125 4.125 5 C -0.078 4.078 6 C -0.128 4.128 7 C 0.348 3.652 8 O -0.420 6.420 9 N -0.358 5.358 10 C 0.007 3.993 11 H 0.123 0.877 12 C -0.039 4.039 13 O -0.252 6.252 14 C 0.011 3.989 15 C -0.016 4.016 16 N -0.327 5.327 17 C -0.340 4.340 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.026 3.974 26 C -0.183 4.183 27 C -0.097 4.097 28 C -0.118 4.118 29 H 0.242 0.758 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.244 0.756 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.155 0.845 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.870 0.481 17.330 18.648 hybrid contribution -0.498 0.233 -1.339 1.447 sum -7.367 0.715 15.991 17.621 Atomic orbital electron populations 1.24924 0.95784 0.98812 0.99036 1.20026 0.92029 1.01667 1.01544 1.16190 0.86713 0.98678 0.95388 1.21147 0.93746 0.99560 0.98011 1.21166 0.93358 0.95951 0.97332 1.20075 0.93004 1.02635 0.97059 1.18198 0.87053 0.78020 0.81908 1.90762 1.69839 1.45351 1.36030 1.45845 1.06925 1.58668 1.24394 1.22593 0.79872 0.96114 1.00711 0.87700 1.23848 1.00195 0.97520 0.82352 1.88469 1.94421 1.21819 1.20526 1.23443 1.01497 0.81425 0.92493 1.22709 0.93758 0.97394 0.87769 1.45368 1.01462 1.81756 1.04075 1.18906 0.92928 1.41069 0.81130 0.90119 1.24755 0.95145 1.02310 0.98214 1.69805 0.96454 1.55897 1.34691 0.86103 0.76937 0.78010 0.84610 1.21499 1.21653 1.20707 1.22367 0.94461 0.96965 0.83602 1.23234 1.02498 0.98309 0.94284 1.21362 0.94241 0.96932 0.97193 1.21185 0.93838 0.98979 0.97769 0.75794 0.84957 0.84072 0.75638 0.89859 0.91531 0.93560 0.93928 0.93742 0.94812 0.90538 0.88945 0.89227 0.84476 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 19.25 29.55 0.57 -0.80 16 2 C -0.15 -1.58 13.23 -38.84 -0.51 -2.09 16 3 C 0.03 0.33 5.73 -106.87 -0.61 -0.28 16 4 C -0.11 -1.07 9.73 -39.26 -0.38 -1.45 16 5 C -0.06 -0.65 9.58 -39.25 -0.38 -1.03 16 6 C -0.12 -1.52 5.88 -104.91 -0.62 -2.14 16 7 C 0.56 7.78 7.77 -12.40 -0.10 7.69 16 8 O -0.54 -8.79 16.08 5.30 0.09 -8.71 16 9 N -0.71 -9.30 5.19 -52.50 -0.27 -9.57 16 10 C 0.11 1.48 3.37 -65.55 -0.22 1.26 16 11 H 0.11 1.28 7.74 -51.93 -0.40 0.88 16 12 C 0.04 0.59 7.49 38.22 0.29 0.88 16 13 O -0.33 -6.62 11.17 -35.23 -0.39 -7.02 16 14 C 0.05 0.97 1.74 -90.59 -0.16 0.81 16 15 C 0.11 2.26 8.21 -8.07 -0.07 2.20 16 16 N -0.60 -15.59 3.79 -184.78 -0.70 -16.29 16 17 C -0.21 -6.07 10.74 -15.06 -0.16 -6.23 16 18 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -27.10 11.52 55.49 0.64 -26.46 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.15 3.43 6.87 -8.07 -0.06 3.38 16 26 C -0.14 -1.90 5.97 -25.07 -0.15 -2.05 16 27 C -0.08 -0.88 9.52 -39.25 -0.37 -1.25 16 28 C -0.10 -1.07 9.73 -39.26 -0.38 -1.46 16 29 H 0.23 0.91 7.80 -54.09 -0.42 0.49 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 1.47 7.64 -52.49 -0.40 1.07 16 32 H 0.41 5.13 6.64 -40.82 -0.27 4.86 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.80 8.13 -51.93 -0.42 0.37 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.03 0.74 7.95 -51.93 -0.41 0.33 16 39 H 0.08 1.95 7.15 -51.93 -0.37 1.58 16 40 H 0.09 1.04 8.13 -51.93 -0.42 0.61 16 41 H 0.09 1.08 7.81 -51.93 -0.41 0.68 16 42 H 0.14 1.41 6.38 -52.49 -0.34 1.08 16 43 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -34.72 370.96 -9.00 -43.73 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.52 Total: 4.33 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.41 Total: -2.90 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.33 Total: -52.31 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.31 Total: -15.72 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.72 -9.00 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053889549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.457 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds