Wall clock time and date at job start Tue Mar 31 2020 14:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39716 * 119.99842 * 299.36047 * 3 2 1 5 5 C 1.37601 * 120.00498 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99418 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00228 * 180.02562 * 6 5 4 8 8 O 1.21577 * 119.99811 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00394 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00205 * 179.97438 * 9 7 6 11 11 H 1.08991 * 110.97144 * 322.30144 * 10 9 7 12 12 C 1.55007 * 111.10524 * 86.45598 * 10 9 7 13 13 O 1.43913 * 105.18564 * 81.91269 * 12 10 9 14 14 C 1.42391 * 109.55135 * 24.29624 * 13 12 10 15 15 C 1.52705 * 116.14240 * 129.84446 * 14 13 12 16 16 N 1.47216 * 87.79590 * 90.69858 * 15 14 13 17 17 C 1.36943 * 135.97453 * 206.20308 * 16 15 14 18 18 H 1.07997 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99737 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00533 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47449 * 89.99500 * 21 19 17 23 23 H 1.48498 * 109.47239 * 210.00092 * 21 19 17 24 24 H 1.48506 * 109.46790 * 330.00058 * 21 19 17 25 25 C 1.47207 * 88.05086 * 26.45746 * 16 15 14 26 26 C 1.53652 * 108.53755 * 358.08376 * 14 13 12 27 27 C 1.39742 * 119.99401 * 0.27331 * 6 5 4 28 28 C 1.37605 * 119.99509 * 359.42677 * 27 6 5 29 29 H 4.51948 * 14.06508 * 359.97438 * 4 2 1 30 30 H 1.07996 * 119.99760 * 0.02658 * 4 3 2 31 31 H 1.07996 * 119.99986 * 179.97438 * 5 4 3 32 32 H 0.97008 * 119.99628 * 359.97438 * 9 7 6 33 33 H 1.09006 * 110.30603 * 322.98906 * 12 10 9 34 34 H 1.09000 * 110.38461 * 200.88666 * 12 10 9 35 35 H 1.08999 * 113.49597 * 335.97033 * 15 14 13 36 36 H 1.09001 * 113.55962 * 205.43974 * 15 14 13 37 37 H 0.97001 * 119.99911 * 180.02562 * 20 19 17 38 38 H 1.08998 * 113.50153 * 88.27916 * 25 16 15 39 39 H 1.08999 * 113.49942 * 218.81112 * 25 16 15 40 40 H 1.09000 * 110.93314 * 97.30301 * 26 14 13 41 41 H 1.09003 * 110.93393 * 220.96388 * 26 14 13 42 42 H 1.07995 * 120.00001 * 179.71999 * 27 6 5 43 43 H 1.08004 * 119.99594 * 180.31814 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3048 -0.5923 1.0546 5 6 4.6808 -0.5913 1.0550 6 6 5.3793 0.0024 0.0002 7 6 6.8561 0.0031 0.0001 8 8 7.4643 -0.5133 0.9176 9 7 7.5298 0.5761 -1.0168 10 6 8.9948 0.5772 -1.0165 11 1 9.3846 0.7249 -0.0095 12 6 9.5541 -0.7240 -1.6465 13 8 9.5076 -0.5048 -3.0681 14 6 9.5341 0.8935 -3.3357 15 6 10.5622 1.3626 -4.3628 16 7 9.5309 1.1752 -5.3965 17 6 9.5201 0.9113 -6.7402 18 1 10.4510 0.7924 -7.2746 19 6 8.3127 0.7976 -7.4155 20 7 7.1781 0.9430 -6.7643 21 14 8.2980 0.4382 -9.2486 22 1 8.2728 -1.0307 -9.4649 23 1 7.0924 1.0499 -9.8632 24 1 9.5171 1.0099 -9.8748 25 6 8.5164 1.4023 -4.3543 26 6 9.5540 1.6469 -1.9967 27 6 4.6802 0.6000 -1.0519 28 6 3.3042 0.5934 -1.0551 29 1 -1.0500 0.0001 0.0007 30 1 2.7650 -1.0515 1.8695 31 1 5.2209 -1.0493 1.8704 32 1 7.0446 0.9878 -1.7490 33 1 8.9293 -1.5748 -1.3745 34 1 10.5814 -0.8913 -1.3230 35 1 11.4108 0.6868 -4.4681 36 1 10.8642 2.4019 -4.2336 37 1 6.3344 0.8632 -7.2362 38 1 8.2568 2.4526 -4.2219 39 1 7.6413 0.7600 -4.4523 40 1 10.5706 1.9308 -1.7247 41 1 8.9034 2.5208 -2.0319 42 1 5.2199 1.0628 -1.8649 43 1 2.7639 1.0507 -1.8708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053889549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:22 Heat of formation + Delta-G solvation = 49.053098 kcal Electronic energy + Delta-G solvation = -26845.039767 eV Core-core repulsion = 23051.218054 eV Total energy + Delta-G solvation = -3793.821713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82558 -40.90206 -39.46354 -37.85687 -35.58212 -34.81389 -34.16922 -32.45099 -31.90264 -31.00471 -29.81890 -27.35847 -26.52497 -25.70320 -23.93482 -23.65361 -22.58868 -21.69398 -20.57149 -19.96156 -19.04093 -18.73446 -17.86951 -17.03788 -16.70940 -16.63245 -16.33615 -16.23985 -15.86266 -15.70840 -15.53845 -15.08255 -14.84419 -14.65513 -14.58231 -14.25717 -14.10367 -13.61099 -13.30516 -13.16002 -13.01456 -12.84161 -12.68826 -12.56941 -12.41191 -12.25415 -12.14730 -11.93838 -11.55651 -11.45580 -11.35461 -11.08879 -10.92860 -10.43776 -10.11882 -10.01678 -9.60875 -8.90257 -7.89761 -5.21062 -0.55949 0.29857 1.43686 1.44336 1.47094 1.54809 1.74353 2.03074 2.24592 2.47322 2.81455 2.95620 3.25120 3.30508 3.36680 3.60424 3.65630 3.66792 3.79951 3.81190 3.87569 4.04725 4.23255 4.35562 4.41425 4.54810 4.67453 4.69494 4.75885 4.77492 4.88614 4.91928 4.92362 4.94307 5.03113 5.16764 5.20940 5.28815 5.30027 5.33200 5.41697 5.51420 5.74248 5.95050 6.34094 6.41604 6.53774 6.92861 7.05603 7.61146 8.61820 9.27987 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003406 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.239495 B = 8219.843802 C =10364.436618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.209 4.209 3 C 0.029 3.971 4 C -0.106 4.106 5 C -0.061 4.061 6 C -0.144 4.144 7 C 0.562 3.438 8 O -0.568 6.568 9 N -0.706 5.706 10 C 0.118 3.882 11 H 0.125 0.875 12 C 0.035 3.965 13 O -0.372 6.372 14 C 0.074 3.926 15 C 0.108 3.892 16 N -0.641 5.641 17 C -0.228 4.228 18 H 0.080 0.920 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.977 3.023 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.269 1.269 25 C 0.151 3.849 26 C -0.128 4.128 27 C -0.081 4.081 28 C -0.110 4.110 29 H 0.263 0.737 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.408 0.592 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.248 0.752 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.140 0.860 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 1.735 18.382 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.209 4.209 3 C 0.029 3.971 4 C -0.123 4.123 5 C -0.080 4.080 6 C -0.147 4.147 7 C 0.351 3.649 8 O -0.449 6.449 9 N -0.357 5.357 10 C 0.014 3.986 11 H 0.143 0.857 12 C -0.043 4.043 13 O -0.291 6.291 14 C 0.033 3.967 15 C -0.017 4.017 16 N -0.366 5.366 17 C -0.356 4.356 18 H 0.098 0.902 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.805 3.195 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.194 1.194 25 C 0.025 3.975 26 C -0.167 4.167 27 C -0.099 4.099 28 C -0.128 4.128 29 H 0.279 0.721 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.158 0.842 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.166 1.168 18.515 19.888 hybrid contribution -0.480 -0.020 -1.666 1.734 sum -7.645 1.148 16.850 18.538 Atomic orbital electron populations 1.25870 0.96534 0.95976 0.96419 1.20304 0.92544 1.04074 1.03952 1.16406 0.87607 0.97903 0.95224 1.21368 0.93345 0.99184 0.98437 1.21283 0.93896 0.95723 0.97109 1.20055 0.92229 1.04238 0.98134 1.18415 0.87673 0.77350 0.81491 1.90736 1.70479 1.46650 1.37017 1.45900 1.07180 1.58373 1.24241 1.22620 0.79723 0.94847 1.01457 0.85748 1.24041 1.01634 0.98232 0.80350 1.88429 1.94384 1.22786 1.23510 1.23081 0.97852 0.81644 0.94168 1.22947 0.93197 0.98862 0.86693 1.45773 1.04487 1.82212 1.04171 1.19267 0.93043 1.40381 0.82956 0.90206 1.25578 0.94939 1.03006 1.02413 1.69985 0.96630 1.57237 1.35950 0.85099 0.77161 0.77430 0.79762 1.21682 1.21676 1.19351 1.22382 0.93656 0.96723 0.84720 1.23215 1.04962 0.97910 0.90566 1.21407 0.94565 0.96902 0.97059 1.21346 0.93726 0.99392 0.98361 0.72120 0.82809 0.83702 0.75469 0.91053 0.89106 0.93863 0.91004 0.94323 0.94041 0.94461 0.85574 0.87619 0.84230 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 19.25 74.32 1.43 -0.36 16 2 C -0.21 -4.05 13.23 30.02 0.40 -3.66 16 3 C 0.03 0.62 5.73 -21.32 -0.12 0.50 16 4 C -0.11 -2.06 9.73 22.48 0.22 -1.84 16 5 C -0.06 -1.35 9.58 22.48 0.22 -1.14 16 6 C -0.14 -3.55 5.88 -20.05 -0.12 -3.67 16 7 C 0.56 15.57 7.77 86.74 0.67 16.25 16 8 O -0.57 -18.29 16.08 -3.96 -0.06 -18.35 16 9 N -0.71 -18.21 5.19 -438.27 -2.27 -20.49 16 10 C 0.12 2.89 3.37 46.54 0.16 3.04 16 11 H 0.12 2.66 7.74 -2.39 -0.02 2.64 16 12 C 0.03 1.02 7.49 72.67 0.54 1.56 16 13 O -0.37 -14.71 11.17 -148.98 -1.66 -16.37 16 14 C 0.07 2.63 1.74 -10.77 -0.02 2.62 16 15 C 0.11 4.32 8.21 83.38 0.68 5.00 16 16 N -0.64 -33.55 3.79 -739.59 -2.80 -36.35 16 17 C -0.23 -13.22 10.74 84.03 0.90 -12.32 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.95 -57.47 11.52 21.65 0.25 -57.22 16 21 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C 0.15 6.91 6.87 83.38 0.57 7.48 16 26 C -0.13 -3.01 5.97 31.67 0.19 -2.82 16 27 C -0.08 -1.86 9.52 22.48 0.21 -1.64 16 28 C -0.11 -2.41 9.73 22.48 0.22 -2.19 16 29 H 0.26 1.07 7.80 -4.42 -0.03 1.04 16 30 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.15 3.01 7.64 -2.91 -0.02 2.99 16 32 H 0.41 10.32 6.64 -92.70 -0.62 9.71 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.48 8.13 -2.39 -0.02 2.46 16 37 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.04 1.81 7.95 -2.39 -0.02 1.79 16 39 H 0.04 1.98 7.15 -2.39 -0.02 1.96 16 40 H 0.13 2.22 8.13 -2.39 -0.02 2.20 16 41 H 0.11 2.22 7.81 -2.39 -0.02 2.20 16 42 H 0.14 3.01 6.38 -2.91 -0.02 3.00 16 43 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -77.44 370.96 2.52 -74.92 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.42 Total: 21.77 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.63 Total: 3.42 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.83 Total: -114.06 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.73 Total: -34.73 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -77.44 2.52 -74.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053889549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.975 kcal (2) G-P(sol) polarization free energy of solvation -77.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds