Wall clock time and date at job start Tue Mar 31 2020 14:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.53004 * 109.46939 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46972 * 180.02562 * 4 3 2 6 6 C 1.32908 * 119.99468 * 264.51902 * 5 4 3 7 7 H 1.07998 * 119.99616 * 145.90687 * 6 5 4 8 8 C 1.46815 * 120.00474 * 325.91254 * 6 5 4 9 9 N 1.29307 * 119.99596 * 338.95153 * 8 6 5 10 10 Si 1.86792 * 120.00237 * 158.95001 * 8 6 5 11 11 H 1.48505 * 109.47228 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47368 * 119.99938 * 10 8 6 13 13 H 1.48505 * 109.47176 * 240.00032 * 10 8 6 14 14 C 1.38802 * 120.00293 * 84.52243 * 5 4 3 15 15 N 1.32382 * 119.14024 * 179.97438 * 14 5 4 16 16 C 1.32852 * 120.80757 * 179.97438 * 15 14 5 17 17 O 1.35539 * 120.44056 * 179.97438 * 16 15 14 18 18 C 1.42901 * 117.00051 * 0.02562 * 17 16 15 19 19 C 1.39097 * 119.11956 * 0.02562 * 16 15 14 20 20 N 1.48019 * 120.78481 * 179.97438 * 19 16 15 21 21 O 1.31699 * 120.00214 * 270.01519 * 20 19 16 22 22 O 1.31697 * 119.99845 * 90.01925 * 20 19 16 23 23 C 1.39094 * 118.42561 * 359.97438 * 19 16 15 24 24 O 1.35543 * 120.43745 * 179.97438 * 23 19 16 25 25 C 1.42895 * 116.99718 * 180.02562 * 24 23 19 26 26 N 1.32391 * 119.13913 * 359.97438 * 14 5 4 27 27 H 1.09004 * 109.47320 * 299.99773 * 1 2 3 28 28 H 1.08998 * 109.47695 * 59.99868 * 1 2 3 29 29 H 1.09004 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46649 * 240.00538 * 2 1 3 31 31 H 1.08996 * 109.47298 * 119.99778 * 2 1 3 32 32 H 1.08995 * 109.47527 * 60.00270 * 3 2 1 33 33 H 1.09002 * 109.47406 * 299.99836 * 3 2 1 34 34 H 1.08995 * 109.47308 * 59.99502 * 4 3 2 35 35 H 1.09002 * 109.46420 * 299.99805 * 4 3 2 36 36 H 0.97005 * 120.00134 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46824 * 59.99695 * 18 17 16 38 38 H 1.08995 * 109.46911 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47400 * 300.00095 * 18 17 16 40 40 H 1.09008 * 109.47486 * 299.99971 * 25 24 23 41 41 H 1.09001 * 109.47776 * 59.99994 * 25 24 23 42 42 H 1.09000 * 109.47457 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3829 3.4143 -1.1456 7 1 4.2116 4.4727 -1.2750 8 6 4.9742 2.6278 -2.2352 9 7 5.5505 1.4990 -1.9787 10 14 4.8941 3.2576 -3.9919 11 1 4.1864 4.5630 -4.0180 12 1 6.2715 3.4302 -4.5193 13 1 4.1600 2.2803 -4.8352 14 6 4.1819 3.5157 1.1969 15 7 4.6253 4.7629 1.1776 16 6 4.7561 5.4560 2.3035 17 8 5.2113 6.7324 2.2752 18 6 5.5347 7.2776 0.9945 19 6 4.4206 4.8541 3.5117 20 7 4.5525 5.5920 4.7881 21 8 5.6815 5.5417 5.4642 22 8 3.5407 6.2988 5.2476 23 6 3.9582 3.5424 3.4921 24 8 3.6202 2.9162 4.6457 25 6 3.1547 1.5693 4.5403 26 7 3.8533 2.9112 2.3279 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9335 0.9286 0.8892 36 1 5.9416 0.9795 -2.6985 37 1 4.6474 7.2689 0.3614 38 1 5.8853 8.3026 1.1141 39 1 6.3175 6.6771 0.5310 40 1 2.2595 1.5418 3.9190 41 1 3.9301 0.9511 4.0879 42 1 2.9188 1.1875 5.5337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:50 Heat of formation + Delta-G solvation = 12.144867 kcal Electronic energy + Delta-G solvation = -29104.901296 eV Core-core repulsion = 24898.629859 eV Total energy + Delta-G solvation = -4206.271437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.78400 -38.82598 -38.36945 -37.71806 -36.52364 -34.47697 -33.55048 -32.94344 -31.98748 -30.91000 -28.83372 -27.71159 -26.83785 -26.07423 -24.56908 -23.28407 -22.58234 -21.53618 -20.74484 -19.12077 -18.24852 -17.77249 -17.48800 -17.24138 -16.29212 -16.21037 -16.00819 -15.42917 -15.25567 -15.00281 -14.54385 -14.24607 -14.15992 -14.09909 -13.37335 -13.31741 -12.69555 -12.55155 -12.13741 -12.06904 -11.93427 -11.66818 -11.65337 -11.49716 -11.22920 -11.07244 -10.87002 -10.83435 -10.74265 -10.67922 -10.64156 -10.22127 -10.06060 -9.93820 -9.72564 -9.18234 -9.08734 -8.71526 -7.94051 -7.21225 -4.32733 0.60566 1.49444 1.93829 2.04885 2.73545 2.76690 2.83206 2.87440 3.46274 3.66381 3.86899 4.00073 4.50174 4.78597 5.14512 5.19940 5.33226 5.35280 5.41710 5.49049 5.50652 5.58775 5.62558 5.66034 5.73658 5.81054 5.94739 5.96536 6.01793 6.07518 6.17327 6.28098 6.42752 6.45919 6.55352 6.64687 6.85904 7.10306 7.33845 7.44513 7.49934 7.67186 7.82329 8.35051 8.67473 9.28942 9.68865 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.005283 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.657873 B = 5299.032854 C = 7275.755779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.107 3.893 5 N -0.310 5.310 6 C -0.321 4.321 7 H 0.117 0.883 8 C 0.052 3.948 9 N -0.794 5.794 10 Si 0.936 3.064 11 H -0.255 1.255 12 H -0.271 1.271 13 H -0.270 1.270 14 C 0.487 3.513 15 N -0.594 5.594 16 C 0.464 3.536 17 O -0.307 6.307 18 C 0.044 3.956 19 C -0.273 4.273 20 N 0.024 4.976 21 O -0.171 6.171 22 O -0.171 6.171 23 C 0.465 3.535 24 O -0.307 6.307 25 C 0.045 3.955 26 N -0.618 5.618 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.291 0.709 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 -2.861 -1.466 5.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.016 4.016 5 N 0.010 4.990 6 C -0.454 4.454 7 H 0.135 0.865 8 C -0.168 4.168 9 N -0.420 5.420 10 Si 0.759 3.241 11 H -0.178 1.178 12 H -0.196 1.196 13 H -0.195 1.195 14 C 0.140 3.860 15 N -0.338 5.338 16 C 0.265 3.735 17 O -0.211 6.211 18 C -0.051 4.051 19 C -0.371 4.371 20 N 0.518 4.482 21 O -0.374 6.374 22 O -0.374 6.374 23 C 0.266 3.734 24 O -0.210 6.210 25 C -0.050 4.050 26 N -0.363 5.363 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.455 -3.931 -3.001 6.656 hybrid contribution 0.186 0.622 0.031 0.650 sum -4.269 -3.308 -2.969 6.163 Atomic orbital electron populations 1.21750 0.96196 1.01013 1.01682 1.21399 0.95385 0.96902 1.01852 1.21902 0.96178 0.96437 1.02131 1.21951 0.92525 0.82218 1.04894 1.41516 1.45416 1.11156 1.00933 1.20859 1.40166 0.96686 0.87640 0.86509 1.27325 0.92368 0.94982 1.02128 1.68888 1.24064 1.12849 1.36211 0.85700 0.79217 0.80351 0.78834 1.17804 1.19626 1.19481 1.18530 0.95655 0.87125 0.84672 1.67598 1.31056 1.10277 1.24885 1.18440 0.84794 0.84307 0.85970 1.86196 1.77925 1.22883 1.34094 1.22907 1.01758 0.97893 0.82539 1.18745 1.42674 0.94955 0.80706 1.49687 1.00320 0.96886 1.01348 1.96179 1.13141 1.69150 1.58941 1.96171 1.28301 1.39217 1.73746 1.18342 0.85021 0.84318 0.85712 1.86210 1.78531 1.29844 1.26454 1.22884 1.00059 0.79280 1.02816 1.67549 1.35404 1.36984 0.96362 0.92950 0.92922 0.93118 0.92096 0.92113 0.92199 0.91935 0.86889 0.91153 0.89627 0.91777 0.88739 0.91515 0.91917 0.91819 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.13 -2.11 5.51 -26.73 -0.15 -2.26 16 4 C 0.11 2.08 4.90 -4.04 -0.02 2.06 16 5 N -0.31 -6.86 2.58 -115.49 -0.30 -7.15 16 6 C -0.32 -7.18 9.17 -13.62 -0.12 -7.31 16 7 H 0.12 2.68 7.67 -52.49 -0.40 2.28 16 8 C 0.05 1.08 5.09 -15.15 -0.08 1.00 16 9 N -0.79 -16.95 11.33 56.00 0.63 -16.32 16 10 Si 0.94 16.04 29.68 -169.99 -5.05 11.00 16 11 H -0.25 -4.39 7.11 56.52 0.40 -3.98 16 12 H -0.27 -4.69 7.11 56.52 0.40 -4.28 16 13 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 14 C 0.49 11.17 8.10 -322.50 -2.61 8.56 16 15 N -0.59 -13.59 8.26 -13.98 -0.12 -13.70 16 16 C 0.46 10.41 7.52 -16.79 -0.13 10.29 16 17 O -0.31 -6.25 10.30 -18.31 -0.19 -6.44 16 18 C 0.04 0.69 10.41 101.05 1.05 1.74 16 19 C -0.27 -6.26 6.38 -79.31 -0.51 -6.77 16 20 N 0.02 0.56 4.51 34.27 0.15 0.72 16 21 O -0.17 -3.96 19.97 -31.57 -0.63 -4.59 16 22 O -0.17 -3.94 19.97 -31.57 -0.63 -4.57 16 23 C 0.46 10.10 7.52 -16.79 -0.13 9.98 16 24 O -0.31 -5.97 10.30 -18.32 -0.19 -6.16 16 25 C 0.04 0.64 10.41 101.05 1.05 1.69 16 26 N -0.62 -13.31 8.15 -13.98 -0.11 -13.43 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.11 2.29 5.27 -51.93 -0.27 2.01 16 35 H 0.07 1.38 7.52 -51.93 -0.39 0.99 16 36 H 0.29 5.63 8.26 -40.82 -0.34 5.29 16 37 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 40 H 0.06 0.88 8.12 -51.92 -0.42 0.45 16 41 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -27.07 371.70 -7.94 -35.01 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.69 Total: 4.12 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -1.43 Total: 15.91 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.26 Total: -49.88 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.64 Total: -21.76 kcal Atomic # 14 Polarization: 16.04 SS G_CDS: -5.05 Total: 11.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.07 -7.94 -35.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.153 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds