Wall clock time and date at job start Tue Mar 31 2020 14:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.53004 * 109.46939 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46972 * 180.02562 * 4 3 2 6 6 C 1.32908 * 119.99468 * 264.51902 * 5 4 3 7 7 H 1.07998 * 119.99616 * 145.90687 * 6 5 4 8 8 C 1.46815 * 120.00474 * 325.91254 * 6 5 4 9 9 N 1.29307 * 119.99596 * 338.95153 * 8 6 5 10 10 Si 1.86792 * 120.00237 * 158.95001 * 8 6 5 11 11 H 1.48505 * 109.47228 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47368 * 119.99938 * 10 8 6 13 13 H 1.48505 * 109.47176 * 240.00032 * 10 8 6 14 14 C 1.38802 * 120.00293 * 84.52243 * 5 4 3 15 15 N 1.32382 * 119.14024 * 179.97438 * 14 5 4 16 16 C 1.32852 * 120.80757 * 179.97438 * 15 14 5 17 17 O 1.35539 * 120.44056 * 179.97438 * 16 15 14 18 18 C 1.42901 * 117.00051 * 0.02562 * 17 16 15 19 19 C 1.39097 * 119.11956 * 0.02562 * 16 15 14 20 20 N 1.48019 * 120.78481 * 179.97438 * 19 16 15 21 21 O 1.31699 * 120.00214 * 270.01519 * 20 19 16 22 22 O 1.31697 * 119.99845 * 90.01925 * 20 19 16 23 23 C 1.39094 * 118.42561 * 359.97438 * 19 16 15 24 24 O 1.35543 * 120.43745 * 179.97438 * 23 19 16 25 25 C 1.42895 * 116.99718 * 180.02562 * 24 23 19 26 26 N 1.32391 * 119.13913 * 359.97438 * 14 5 4 27 27 H 1.09004 * 109.47320 * 299.99773 * 1 2 3 28 28 H 1.08998 * 109.47695 * 59.99868 * 1 2 3 29 29 H 1.09004 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46649 * 240.00538 * 2 1 3 31 31 H 1.08996 * 109.47298 * 119.99778 * 2 1 3 32 32 H 1.08995 * 109.47527 * 60.00270 * 3 2 1 33 33 H 1.09002 * 109.47406 * 299.99836 * 3 2 1 34 34 H 1.08995 * 109.47308 * 59.99502 * 4 3 2 35 35 H 1.09002 * 109.46420 * 299.99805 * 4 3 2 36 36 H 0.97005 * 120.00134 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46824 * 59.99695 * 18 17 16 38 38 H 1.08995 * 109.46911 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47400 * 300.00095 * 18 17 16 40 40 H 1.09008 * 109.47486 * 299.99971 * 25 24 23 41 41 H 1.09001 * 109.47776 * 59.99994 * 25 24 23 42 42 H 1.09000 * 109.47457 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3829 3.4143 -1.1456 7 1 4.2116 4.4727 -1.2750 8 6 4.9742 2.6278 -2.2352 9 7 5.5505 1.4990 -1.9787 10 14 4.8941 3.2576 -3.9919 11 1 4.1864 4.5630 -4.0180 12 1 6.2715 3.4302 -4.5193 13 1 4.1600 2.2803 -4.8352 14 6 4.1819 3.5157 1.1969 15 7 4.6253 4.7629 1.1776 16 6 4.7561 5.4560 2.3035 17 8 5.2113 6.7324 2.2752 18 6 5.5347 7.2776 0.9945 19 6 4.4206 4.8541 3.5117 20 7 4.5525 5.5920 4.7881 21 8 5.6815 5.5417 5.4642 22 8 3.5407 6.2988 5.2476 23 6 3.9582 3.5424 3.4921 24 8 3.6202 2.9162 4.6457 25 6 3.1547 1.5693 4.5403 26 7 3.8533 2.9112 2.3279 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9335 0.9286 0.8892 36 1 5.9416 0.9795 -2.6985 37 1 4.6474 7.2689 0.3614 38 1 5.8853 8.3026 1.1141 39 1 6.3175 6.6771 0.5310 40 1 2.2595 1.5418 3.9190 41 1 3.9301 0.9511 4.0879 42 1 2.9188 1.1875 5.5337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:49 Heat of formation + Delta-G solvation = -2.480357 kcal Electronic energy + Delta-G solvation = -29105.535493 eV Core-core repulsion = 24898.629859 eV Total energy + Delta-G solvation = -4206.905634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.40430 -40.33702 -40.02086 -39.44010 -38.07392 -35.77073 -35.37355 -34.59430 -33.60778 -32.54145 -30.17904 -29.04204 -28.24987 -27.71273 -26.10656 -24.82679 -24.13528 -23.08608 -22.01354 -20.71038 -19.88244 -19.49014 -19.30552 -18.87384 -17.85149 -17.81754 -17.55954 -16.87169 -16.78445 -16.28688 -16.16459 -15.71950 -15.62407 -15.57521 -14.90817 -14.58473 -14.05637 -13.90773 -13.58105 -13.41887 -13.24138 -13.06560 -12.89901 -12.87936 -12.80055 -12.54944 -12.45886 -12.17431 -12.11166 -12.05969 -11.91257 -11.78485 -11.77522 -11.52669 -11.27859 -10.77871 -10.70079 -10.39789 -9.62793 -8.84971 -6.04410 -1.19409 -0.20003 0.28507 0.28684 1.28252 1.36257 1.40686 1.53109 1.98517 2.16032 2.30826 2.36938 2.83490 3.24977 3.65548 3.90249 3.94884 4.04246 4.15710 4.27015 4.34114 4.34417 4.36342 4.39520 4.45959 4.62102 4.65632 4.70200 4.77764 4.79475 4.88917 4.94011 5.00218 5.13390 5.27889 5.33980 5.45419 5.50552 5.69631 5.79491 5.80536 6.05454 6.13053 6.67126 6.96792 7.60092 8.06204 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.005283 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.657873 B = 5299.032854 C = 7275.755779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.116 4.116 4 C 0.110 3.890 5 N -0.309 5.309 6 C -0.344 4.344 7 H 0.106 0.894 8 C 0.030 3.970 9 N -0.810 5.810 10 Si 1.000 3.000 11 H -0.257 1.257 12 H -0.268 1.268 13 H -0.256 1.256 14 C 0.454 3.546 15 N -0.605 5.605 16 C 0.458 3.542 17 O -0.318 6.318 18 C 0.040 3.960 19 C -0.300 4.300 20 N 0.027 4.973 21 O -0.182 6.182 22 O -0.172 6.172 23 C 0.460 3.540 24 O -0.317 6.317 25 C 0.038 3.962 26 N -0.611 5.611 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.303 0.697 37 H 0.062 0.938 38 H 0.135 0.865 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 -3.786 -2.847 6.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.154 4.154 4 C -0.013 4.013 5 N 0.012 4.988 6 C -0.476 4.476 7 H 0.123 0.877 8 C -0.189 4.189 9 N -0.436 5.436 10 Si 0.820 3.180 11 H -0.181 1.181 12 H -0.193 1.193 13 H -0.180 1.180 14 C 0.108 3.892 15 N -0.350 5.350 16 C 0.258 3.742 17 O -0.222 6.222 18 C -0.053 4.053 19 C -0.398 4.398 20 N 0.520 4.480 21 O -0.384 6.384 22 O -0.376 6.376 23 C 0.261 3.739 24 O -0.221 6.221 25 C -0.055 4.055 26 N -0.357 5.357 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.043 -4.888 -4.357 8.265 hybrid contribution 0.410 0.831 0.356 0.993 sum -4.633 -4.057 -4.000 7.343 Atomic orbital electron populations 1.21721 0.94524 1.02362 1.01666 1.21378 0.96773 0.94419 1.02414 1.21796 0.93950 0.98616 1.01044 1.22030 0.94313 0.80851 1.04075 1.41839 1.44459 1.11814 1.00727 1.21035 1.41376 0.96822 0.88408 0.87673 1.28103 0.91154 0.94794 1.04898 1.68894 1.23385 1.13352 1.37973 0.84781 0.79228 0.79883 0.74143 1.18082 1.19320 1.18043 1.18842 0.97295 0.87779 0.85323 1.67587 1.31725 1.10534 1.25120 1.18600 0.84785 0.84973 0.85794 1.86196 1.77618 1.21966 1.36373 1.23204 1.01536 0.99559 0.81024 1.19050 1.44374 0.95806 0.80586 1.49745 1.00125 0.96674 1.01467 1.96161 1.13349 1.69564 1.59290 1.96148 1.28360 1.39262 1.73857 1.18498 0.84850 0.84253 0.86307 1.86214 1.78365 1.31974 1.25501 1.23242 0.99916 0.77000 1.05364 1.67565 1.35492 1.36558 0.96042 0.93088 0.92877 0.91077 0.91614 0.91473 0.93492 0.92695 0.87570 0.91778 0.88363 0.91893 0.84657 0.92184 0.91605 0.91930 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.11 -2.79 5.93 30.59 0.18 -2.61 16 3 C -0.12 -3.78 5.51 30.60 0.17 -3.61 16 4 C 0.11 4.26 4.90 86.38 0.42 4.68 16 5 N -0.31 -13.86 2.58 -519.28 -1.34 -15.20 16 6 C -0.34 -15.49 9.17 86.78 0.80 -14.69 16 7 H 0.11 4.92 7.67 -2.91 -0.02 4.90 16 8 C 0.03 1.21 5.09 87.31 0.44 1.65 16 9 N -0.81 -33.75 11.33 23.26 0.26 -33.48 16 10 Si 1.00 31.44 29.68 68.60 2.04 33.48 16 11 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 12 H -0.27 -8.34 7.11 99.48 0.71 -7.63 16 13 H -0.26 -7.52 7.11 99.48 0.71 -6.82 16 14 C 0.45 21.31 8.10 261.38 2.12 23.43 16 15 N -0.60 -28.40 8.26 -310.77 -2.57 -30.96 16 16 C 0.46 21.04 7.52 84.74 0.64 21.68 16 17 O -0.32 -13.06 10.30 -88.43 -0.91 -13.97 16 18 C 0.04 1.26 10.41 113.37 1.18 2.44 16 19 C -0.30 -14.07 6.38 36.79 0.23 -13.83 16 20 N 0.03 1.28 4.51 -45.48 -0.21 1.08 16 21 O -0.18 -8.57 19.97 3.52 0.07 -8.50 16 22 O -0.17 -7.95 19.97 3.52 0.07 -7.88 16 23 C 0.46 20.36 7.52 84.74 0.64 21.00 16 24 O -0.32 -12.31 10.30 -88.48 -0.91 -13.22 16 25 C 0.04 1.06 10.41 113.37 1.18 2.24 16 26 N -0.61 -26.82 8.15 -310.77 -2.53 -29.36 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 4.27 5.27 -2.39 -0.01 4.25 16 35 H 0.06 2.54 7.52 -2.39 -0.02 2.52 16 36 H 0.30 11.22 8.26 -92.70 -0.77 10.46 16 37 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 38 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 40 H 0.07 1.78 8.12 -2.38 -0.02 1.76 16 41 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 42 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -58.61 371.70 3.74 -54.88 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 1.05 Total: 23.09 kcal Atomic # 6 Polarization: 31.34 SS G_CDS: 8.71 Total: 40.05 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -6.38 Total: -107.93 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.68 Total: -43.57 kcal Atomic # 14 Polarization: 31.44 SS G_CDS: 2.04 Total: 33.48 kcal Total: -58.61 3.74 -54.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.399 kcal (2) G-P(sol) polarization free energy of solvation -58.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds