Wall clock time and date at job start Tue Mar 31 2020 14:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21270 * 120.00220 * 2 1 4 4 C 1.46990 * 119.99858 * 179.97438 * 2 1 3 5 5 C 1.41403 * 126.73687 * 85.21432 * 4 2 1 6 6 C 1.50693 * 126.23688 * 0.04054 * 5 4 2 7 7 C 1.35044 * 107.52273 * 180.02562 * 5 4 2 8 8 C 1.50706 * 125.36139 * 179.74013 * 7 5 4 9 9 N 1.35672 * 109.27768 * 0.02562 * 7 5 4 10 10 H 0.96993 * 125.39014 * 180.02562 * 9 7 5 11 11 C 1.36430 * 109.21192 * 0.02562 * 9 7 5 12 12 C 1.47146 * 126.26652 * 180.02562 * 11 9 7 13 13 O 1.21639 * 119.99425 * 185.31351 * 12 11 9 14 14 N 1.34773 * 120.00090 * 5.31386 * 12 11 9 15 15 C 1.39808 * 120.00070 * 184.96297 * 14 12 11 16 16 C 1.39327 * 119.95139 * 323.32960 * 15 14 12 17 17 C 1.38473 * 120.42510 * 179.75800 * 16 15 14 18 18 C 1.37691 * 120.32785 * 0.51714 * 17 16 15 19 19 C 1.40745 * 119.88716 * 359.74215 * 18 17 16 20 20 C 1.41407 * 120.20544 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00067 * 149.85554 * 20 19 18 22 22 C 1.39938 * 119.99844 * 329.84970 * 20 19 18 23 23 N 1.30832 * 119.99664 * 166.12911 * 22 20 19 24 24 Si 1.86792 * 120.00198 * 346.12475 * 22 20 19 25 25 H 1.48506 * 109.46904 * 89.75663 * 24 22 20 26 26 H 1.48498 * 109.47586 * 209.75450 * 24 22 20 27 27 H 1.48500 * 109.47450 * 329.75954 * 24 22 20 28 28 C 1.38276 * 119.95125 * 143.60121 * 15 14 12 29 29 H 1.09001 * 109.47121 * 185.02156 * 1 2 3 30 30 H 1.08997 * 109.46976 * 305.02560 * 1 2 3 31 31 H 1.08997 * 109.47112 * 65.02515 * 1 2 3 32 32 H 1.09007 * 109.47182 * 269.97790 * 6 5 4 33 33 H 1.09003 * 109.47264 * 29.97651 * 6 5 4 34 34 H 1.09000 * 109.47523 * 149.98125 * 6 5 4 35 35 H 1.08995 * 109.47346 * 89.99588 * 8 7 5 36 36 H 1.09004 * 109.46982 * 210.00192 * 8 7 5 37 37 H 1.09007 * 109.46890 * 329.99675 * 8 7 5 38 38 H 0.97002 * 120.00300 * 4.96951 * 14 12 11 39 39 H 1.07999 * 119.78674 * 359.97438 * 16 15 14 40 40 H 1.08001 * 119.83656 * 180.23459 * 17 16 15 41 41 H 1.08002 * 120.05148 * 179.76160 * 18 17 16 42 42 H 0.97000 * 119.99691 * 180.02562 * 23 22 20 43 43 H 1.08001 * 120.16463 * 359.96320 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2419 -1.2730 0.0006 5 6 2.5829 -2.0532 -1.1283 6 6 2.2589 -1.7314 -2.5644 7 6 3.2521 -3.1392 -0.6849 8 6 3.7980 -4.2424 -1.5544 9 7 3.3501 -3.0838 0.6671 10 1 3.7861 -3.7455 1.2263 11 6 2.7382 -1.9498 1.1155 12 6 2.6244 -1.5183 2.5177 13 8 1.9692 -0.5330 2.7994 14 7 3.2461 -2.2149 3.4896 15 6 3.0544 -1.8678 4.8303 16 6 2.9284 -0.5278 5.1907 17 6 2.7333 -0.1733 6.5150 18 6 2.6723 -1.1413 7.4922 19 6 2.8034 -2.4987 7.1439 20 6 2.7413 -3.4985 8.1420 21 1 2.3604 -4.4797 7.9004 22 6 3.1735 -3.2164 9.4427 23 7 2.8728 -4.0295 10.4227 24 14 4.1798 -1.6792 9.7799 25 1 3.2683 -0.5510 10.0988 26 1 5.0865 -1.9235 10.9303 27 1 4.9845 -1.3410 8.5785 28 6 2.9959 -2.8544 5.7973 29 1 -0.3633 -1.0237 0.0900 30 1 -0.3633 0.5898 0.8415 31 1 -0.3633 0.4339 -0.9315 32 1 1.2937 -2.1657 -2.8253 33 1 2.2177 -0.6499 -2.6940 34 1 3.0309 -2.1459 -3.2128 35 1 4.8171 -3.9983 -1.8542 36 1 3.7978 -5.1787 -0.9963 37 1 3.1737 -4.3483 -2.4417 38 1 3.8266 -2.9571 3.2590 39 1 2.9797 0.2390 4.4319 40 1 2.6330 0.8681 6.7833 41 1 2.5239 -0.8595 8.5242 42 1 3.1721 -3.8337 11.3243 43 1 3.0973 -3.8932 5.5196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184751027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:47 Heat of formation + Delta-G solvation = -14.534388 kcal Electronic energy + Delta-G solvation = -26705.781676 eV Core-core repulsion = 22909.202603 eV Total energy + Delta-G solvation = -3796.579073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88474 -39.62147 -38.78262 -37.45751 -34.69901 -33.52435 -33.06150 -32.20925 -30.36314 -29.95820 -29.09918 -28.06866 -26.21902 -25.14869 -23.74196 -21.96283 -21.20861 -20.40993 -19.46094 -18.82074 -18.32774 -17.73001 -16.10513 -15.96265 -15.76511 -15.53334 -15.19549 -14.80251 -14.65793 -14.53650 -14.33300 -14.18700 -13.62487 -13.47870 -13.15457 -12.88191 -12.82602 -12.70328 -12.60550 -12.56228 -12.29353 -12.09784 -12.05307 -11.79689 -11.68892 -11.10542 -10.81144 -10.66263 -10.32111 -9.85953 -9.77597 -9.67915 -9.42329 -9.03163 -9.01935 -8.30660 -7.73732 -7.27497 -6.95933 -4.55250 1.15242 1.98056 2.22212 2.44960 2.58484 2.72026 3.10221 3.19558 3.24105 3.28485 3.37871 3.95806 4.13181 4.46950 4.53249 4.69248 4.75414 4.94865 5.03447 5.14328 5.17126 5.34364 5.39140 5.43892 5.48978 5.49946 5.68351 5.72004 5.80493 5.98058 6.01422 6.27936 6.29763 6.40289 6.43983 6.53918 6.66831 6.72472 7.02189 7.11098 7.22691 7.39596 7.56748 7.61487 7.78083 7.79810 8.00781 8.27407 8.35032 8.57640 8.76227 10.06769 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.002906 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.800942 B = 9631.563712 C =10513.536133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.440 3.560 3 O -0.450 6.450 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.082 4.082 7 C 0.045 3.955 8 C -0.089 4.089 9 N -0.525 5.525 10 H 0.420 0.580 11 C -0.003 4.003 12 C 0.578 3.422 13 O -0.499 6.499 14 N -0.664 5.664 15 C 0.162 3.838 16 C -0.226 4.226 17 C -0.068 4.068 18 C -0.244 4.244 19 C 0.106 3.894 20 C -0.449 4.449 21 H 0.090 0.910 22 C 0.083 3.917 23 N -0.813 5.813 24 Si 0.917 3.083 25 H -0.269 1.269 26 H -0.294 1.294 27 H -0.246 1.246 28 C -0.228 4.228 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.396 0.604 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.285 0.715 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 -1.541 -22.361 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.315 3.685 3 O -0.322 6.322 4 C -0.162 4.162 5 C -0.149 4.149 6 C -0.139 4.139 7 C -0.071 4.071 8 C -0.146 4.146 9 N -0.121 5.121 10 H 0.258 0.742 11 C -0.119 4.119 12 C 0.365 3.635 13 O -0.373 6.373 14 N -0.308 5.308 15 C 0.070 3.930 16 C -0.247 4.247 17 C -0.086 4.086 18 C -0.263 4.263 19 C 0.102 3.898 20 C -0.478 4.478 21 H 0.108 0.892 22 C -0.135 4.135 23 N -0.438 5.438 24 Si 0.744 3.256 25 H -0.195 1.195 26 H -0.221 1.221 27 H -0.169 1.169 28 C -0.249 4.249 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.684 -0.498 -21.793 21.810 hybrid contribution 0.879 -0.371 0.670 1.166 sum 1.563 -0.869 -21.123 21.198 Atomic orbital electron populations 1.22146 0.93386 1.04759 1.04445 1.21715 0.91325 0.86333 0.69173 1.90540 1.72363 1.34083 1.35258 1.20245 1.05267 0.98537 0.92198 1.19123 1.05610 0.95217 0.94955 1.20196 1.01540 1.01879 0.90329 1.20189 1.04834 0.99505 0.82573 1.20421 1.01511 0.94340 0.98327 1.41607 1.43901 1.19378 1.07194 0.74233 1.20393 1.07169 0.91169 0.93148 1.17116 0.80133 0.83687 0.82612 1.90865 1.40329 1.24615 1.81491 1.43254 1.47434 1.34410 1.05683 1.17470 1.01147 0.93952 0.80406 1.20493 1.14385 0.93792 0.95982 1.20529 0.97793 0.97649 0.92670 1.21205 1.13071 0.93762 0.98245 1.17482 0.88393 0.92030 0.91892 1.19423 1.36758 0.99587 0.91983 0.89210 1.26139 0.94443 0.97712 0.95226 1.69660 1.35993 1.36715 1.01415 0.86289 0.79981 0.80753 0.78555 1.19533 1.22147 1.16939 1.20714 1.14885 0.96298 0.93052 0.90175 0.88506 0.89077 0.91389 0.91841 0.91478 0.90487 0.91220 0.89610 0.77002 0.86950 0.88260 0.87766 0.90426 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 10.32 36.00 0.37 -1.77 16 2 C 0.44 6.57 5.59 -30.76 -0.17 6.40 16 3 O -0.45 -8.25 17.86 5.57 0.10 -8.15 16 4 C -0.15 -2.12 5.77 -104.66 -0.60 -2.73 16 5 C -0.14 -1.53 6.15 -104.56 -0.64 -2.17 16 6 C -0.08 -0.63 9.78 36.00 0.35 -0.28 16 7 C 0.04 0.40 7.10 -82.03 -0.58 -0.18 16 8 C -0.09 -0.44 10.00 36.01 0.36 -0.08 16 9 N -0.52 -5.17 5.92 -5.50 -0.03 -5.20 16 10 H 0.42 2.89 8.22 -40.82 -0.34 2.55 16 11 C 0.00 -0.04 7.09 -81.72 -0.58 -0.62 16 12 C 0.58 10.06 7.64 -12.65 -0.10 9.97 16 13 O -0.50 -10.47 13.31 5.24 0.07 -10.40 16 14 N -0.66 -11.10 5.32 -10.97 -0.06 -11.16 16 15 C 0.16 3.42 6.26 -83.80 -0.52 2.90 16 16 C -0.23 -5.09 8.69 -39.09 -0.34 -5.43 16 17 C -0.07 -1.54 10.01 -39.69 -0.40 -1.93 16 18 C -0.24 -5.94 7.14 -38.83 -0.28 -6.22 16 19 C 0.11 2.65 5.14 -106.85 -0.55 2.10 16 20 C -0.45 -11.97 9.60 -37.74 -0.36 -12.33 16 21 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 22 C 0.08 2.16 5.46 -17.34 -0.09 2.07 16 23 N -0.81 -21.56 13.93 55.55 0.77 -20.79 16 24 Si 0.92 20.88 24.43 -169.99 -4.15 16.73 16 25 H -0.27 -5.98 6.49 56.52 0.37 -5.62 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.25 -5.72 6.88 56.52 0.39 -5.33 16 28 C -0.23 -5.13 9.71 -38.68 -0.38 -5.51 16 29 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 34 H 0.07 0.39 7.73 -51.93 -0.40 -0.01 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.33 7.71 -51.93 -0.40 -0.07 16 38 H 0.40 5.00 8.00 -40.82 -0.33 4.68 16 39 H 0.11 2.56 6.31 -52.49 -0.33 2.23 16 40 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.10 2.53 4.29 -52.49 -0.23 2.30 16 42 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 43 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -33.62 364.17 -7.74 -41.37 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.42 Total: 7.92 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -4.51 Total: -15.81 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.68 Total: -37.15 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.15 Total: 16.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.62 -7.74 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184751027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.832 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds