Wall clock time and date at job start Tue Mar 31 2020 14:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21270 * 120.00220 * 2 1 4 4 C 1.46990 * 119.99858 * 179.97438 * 2 1 3 5 5 C 1.41403 * 126.73687 * 85.21432 * 4 2 1 6 6 C 1.50693 * 126.23688 * 0.04054 * 5 4 2 7 7 C 1.35044 * 107.52273 * 180.02562 * 5 4 2 8 8 C 1.50706 * 125.36139 * 179.74013 * 7 5 4 9 9 N 1.35672 * 109.27768 * 0.02562 * 7 5 4 10 10 H 0.96993 * 125.39014 * 180.02562 * 9 7 5 11 11 C 1.36430 * 109.21192 * 0.02562 * 9 7 5 12 12 C 1.47146 * 126.26652 * 180.02562 * 11 9 7 13 13 O 1.21639 * 119.99425 * 185.31351 * 12 11 9 14 14 N 1.34773 * 120.00090 * 5.31386 * 12 11 9 15 15 C 1.39808 * 120.00070 * 184.96297 * 14 12 11 16 16 C 1.39327 * 119.95139 * 323.32960 * 15 14 12 17 17 C 1.38473 * 120.42510 * 179.75800 * 16 15 14 18 18 C 1.37691 * 120.32785 * 0.51714 * 17 16 15 19 19 C 1.40745 * 119.88716 * 359.74215 * 18 17 16 20 20 C 1.41407 * 120.20544 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00067 * 149.85554 * 20 19 18 22 22 C 1.39938 * 119.99844 * 329.84970 * 20 19 18 23 23 N 1.30832 * 119.99664 * 166.12911 * 22 20 19 24 24 Si 1.86792 * 120.00198 * 346.12475 * 22 20 19 25 25 H 1.48506 * 109.46904 * 89.75663 * 24 22 20 26 26 H 1.48498 * 109.47586 * 209.75450 * 24 22 20 27 27 H 1.48500 * 109.47450 * 329.75954 * 24 22 20 28 28 C 1.38276 * 119.95125 * 143.60121 * 15 14 12 29 29 H 1.09001 * 109.47121 * 185.02156 * 1 2 3 30 30 H 1.08997 * 109.46976 * 305.02560 * 1 2 3 31 31 H 1.08997 * 109.47112 * 65.02515 * 1 2 3 32 32 H 1.09007 * 109.47182 * 269.97790 * 6 5 4 33 33 H 1.09003 * 109.47264 * 29.97651 * 6 5 4 34 34 H 1.09000 * 109.47523 * 149.98125 * 6 5 4 35 35 H 1.08995 * 109.47346 * 89.99588 * 8 7 5 36 36 H 1.09004 * 109.46982 * 210.00192 * 8 7 5 37 37 H 1.09007 * 109.46890 * 329.99675 * 8 7 5 38 38 H 0.97002 * 120.00300 * 4.96951 * 14 12 11 39 39 H 1.07999 * 119.78674 * 359.97438 * 16 15 14 40 40 H 1.08001 * 119.83656 * 180.23459 * 17 16 15 41 41 H 1.08002 * 120.05148 * 179.76160 * 18 17 16 42 42 H 0.97000 * 119.99691 * 180.02562 * 23 22 20 43 43 H 1.08001 * 120.16463 * 359.96320 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2419 -1.2730 0.0006 5 6 2.5829 -2.0532 -1.1283 6 6 2.2589 -1.7314 -2.5644 7 6 3.2521 -3.1392 -0.6849 8 6 3.7980 -4.2424 -1.5544 9 7 3.3501 -3.0838 0.6671 10 1 3.7861 -3.7455 1.2263 11 6 2.7382 -1.9498 1.1155 12 6 2.6244 -1.5183 2.5177 13 8 1.9692 -0.5330 2.7994 14 7 3.2461 -2.2149 3.4896 15 6 3.0544 -1.8678 4.8303 16 6 2.9284 -0.5278 5.1907 17 6 2.7333 -0.1733 6.5150 18 6 2.6723 -1.1413 7.4922 19 6 2.8034 -2.4987 7.1439 20 6 2.7413 -3.4985 8.1420 21 1 2.3604 -4.4797 7.9004 22 6 3.1735 -3.2164 9.4427 23 7 2.8728 -4.0295 10.4227 24 14 4.1798 -1.6792 9.7799 25 1 3.2683 -0.5510 10.0988 26 1 5.0865 -1.9235 10.9303 27 1 4.9845 -1.3410 8.5785 28 6 2.9959 -2.8544 5.7973 29 1 -0.3633 -1.0237 0.0900 30 1 -0.3633 0.5898 0.8415 31 1 -0.3633 0.4339 -0.9315 32 1 1.2937 -2.1657 -2.8253 33 1 2.2177 -0.6499 -2.6940 34 1 3.0309 -2.1459 -3.2128 35 1 4.8171 -3.9983 -1.8542 36 1 3.7978 -5.1787 -0.9963 37 1 3.1737 -4.3483 -2.4417 38 1 3.8266 -2.9571 3.2590 39 1 2.9797 0.2390 4.4319 40 1 2.6330 0.8681 6.7833 41 1 2.5239 -0.8595 8.5242 42 1 3.1721 -3.8337 11.3243 43 1 3.0973 -3.8932 5.5196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184751027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:46 Heat of formation + Delta-G solvation = -36.587018 kcal Electronic energy + Delta-G solvation = -26706.737950 eV Core-core repulsion = 22909.202603 eV Total energy + Delta-G solvation = -3797.535347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.82448 -41.07798 -39.95637 -39.17444 -36.30865 -35.19508 -34.05663 -33.06144 -32.23857 -30.92050 -30.65058 -28.76830 -27.33445 -26.92842 -24.78626 -23.40254 -22.96352 -21.83518 -20.41513 -20.02894 -19.50306 -19.32970 -17.87471 -17.23375 -17.04831 -16.85726 -16.49267 -16.21005 -15.99648 -15.78136 -15.58801 -15.28096 -15.21577 -14.56784 -14.47631 -14.16172 -13.94286 -13.64670 -13.58990 -13.49384 -13.29823 -13.24137 -13.03050 -12.95488 -12.90417 -12.66667 -12.52147 -12.49532 -12.04739 -11.63977 -11.34984 -11.22185 -10.91261 -10.78878 -9.90538 -9.61497 -9.22881 -8.93853 -8.91073 -6.56548 0.02635 0.69793 0.72481 0.87467 1.26933 1.39142 1.45231 1.48079 1.78661 1.98946 2.05179 2.11263 2.58691 3.17292 3.41174 3.61959 3.88706 4.04308 4.12402 4.23249 4.32750 4.46253 4.47214 4.53223 4.59777 4.63597 4.73809 4.80429 4.83633 4.88113 4.94382 4.95203 5.04811 5.12095 5.13985 5.18824 5.28239 5.47124 5.59702 5.64382 5.70861 5.76098 5.87454 6.12719 6.26817 6.33632 6.43346 6.45410 6.63886 6.77450 6.96054 8.16876 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.002906 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.800942 B = 9631.563712 C =10513.536133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.435 3.565 3 O -0.498 6.498 4 C -0.169 4.169 5 C -0.158 4.158 6 C -0.081 4.081 7 C 0.072 3.928 8 C -0.089 4.089 9 N -0.511 5.511 10 H 0.434 0.566 11 C -0.036 4.036 12 C 0.578 3.422 13 O -0.543 6.543 14 N -0.655 5.655 15 C 0.171 3.829 16 C -0.229 4.229 17 C -0.070 4.070 18 C -0.259 4.259 19 C 0.089 3.911 20 C -0.478 4.478 21 H 0.063 0.937 22 C 0.050 3.950 23 N -0.849 5.849 24 Si 0.966 3.034 25 H -0.260 1.260 26 H -0.279 1.279 27 H -0.254 1.254 28 C -0.230 4.230 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.417 0.583 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.294 0.706 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -2.299 -25.267 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.313 3.687 3 O -0.374 6.374 4 C -0.179 4.179 5 C -0.163 4.163 6 C -0.138 4.138 7 C -0.045 4.045 8 C -0.146 4.146 9 N -0.108 5.108 10 H 0.274 0.726 11 C -0.151 4.151 12 C 0.367 3.633 13 O -0.420 6.420 14 N -0.300 5.300 15 C 0.078 3.922 16 C -0.250 4.250 17 C -0.089 4.089 18 C -0.278 4.278 19 C 0.086 3.914 20 C -0.507 4.507 21 H 0.081 0.919 22 C -0.165 4.165 23 N -0.476 5.476 24 Si 0.791 3.209 25 H -0.186 1.186 26 H -0.206 1.206 27 H -0.178 1.178 28 C -0.251 4.251 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.523 -1.317 -24.709 24.791 hybrid contribution 0.597 -0.169 1.281 1.424 sum 2.119 -1.487 -23.427 23.570 Atomic orbital electron populations 1.22177 0.90980 1.05733 1.05462 1.22395 0.92956 0.86220 0.67160 1.90514 1.73469 1.35602 1.37789 1.20491 1.05383 0.98426 0.93639 1.19546 1.05981 0.95255 0.95549 1.20284 1.03358 1.01366 0.88821 1.20914 1.02001 0.99455 0.82180 1.20647 1.02373 0.93311 0.98288 1.41596 1.42915 1.18340 1.07911 0.72558 1.19735 1.10614 0.93614 0.91154 1.17549 0.79018 0.82847 0.83835 1.90832 1.42178 1.26535 1.82467 1.43096 1.47818 1.35110 1.03946 1.17454 0.99328 0.93208 0.82219 1.20698 1.13784 0.94495 0.95975 1.20810 0.96902 0.98769 0.92377 1.21282 1.14047 0.93794 0.98713 1.17644 0.88822 0.92203 0.92702 1.19417 1.38916 0.99058 0.93332 0.91898 1.26751 0.94913 1.00044 0.94797 1.69683 1.37449 1.38320 1.02101 0.85522 0.78904 0.78089 0.78411 1.18610 1.20553 1.17811 1.20874 1.14267 0.97493 0.92472 0.88800 0.89553 0.86160 0.89626 0.93166 0.89098 0.88968 0.89491 0.87738 0.74575 0.87156 0.85737 0.87829 0.89521 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 10.32 71.24 0.73 -3.36 16 2 C 0.43 13.04 5.59 27.98 0.16 13.20 16 3 O -0.50 -18.83 17.86 -3.00 -0.05 -18.89 16 4 C -0.17 -4.53 5.77 -19.89 -0.11 -4.64 16 5 C -0.16 -2.96 6.15 -19.82 -0.12 -3.08 16 6 C -0.08 -1.00 9.78 71.23 0.70 -0.30 16 7 C 0.07 1.03 7.10 41.23 0.29 1.32 16 8 C -0.09 -0.44 10.00 71.24 0.71 0.27 16 9 N -0.51 -8.67 5.92 -171.31 -1.01 -9.69 16 10 H 0.43 4.62 8.22 -92.71 -0.76 3.86 16 11 C -0.04 -0.96 7.09 41.09 0.29 -0.67 16 12 C 0.58 19.94 7.64 86.58 0.66 20.60 16 13 O -0.54 -23.13 13.31 -4.16 -0.06 -23.19 16 14 N -0.65 -21.23 5.32 -306.85 -1.63 -22.86 16 15 C 0.17 7.13 6.26 38.14 0.24 7.37 16 16 C -0.23 -10.21 8.69 22.59 0.20 -10.02 16 17 C -0.07 -3.13 10.01 22.20 0.22 -2.91 16 18 C -0.26 -12.60 7.14 22.75 0.16 -12.44 16 19 C 0.09 4.54 5.14 -21.31 -0.11 4.43 16 20 C -0.48 -26.27 9.60 23.46 0.23 -26.04 16 21 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 22 C 0.05 2.63 5.46 85.25 0.47 3.10 16 23 N -0.85 -46.02 13.93 21.83 0.30 -45.72 16 24 Si 0.97 43.00 24.43 68.60 1.68 44.67 16 25 H -0.26 -11.12 6.49 99.48 0.65 -10.48 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.25 -11.55 6.88 99.48 0.68 -10.86 16 28 C -0.23 -10.29 9.71 22.86 0.22 -10.06 16 29 H 0.09 1.76 7.99 -2.39 -0.02 1.74 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 0.76 8.04 -2.39 -0.02 0.74 16 34 H 0.09 0.68 7.73 -2.39 -0.02 0.66 16 35 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.10 0.22 7.71 -2.38 -0.02 0.21 16 38 H 0.42 9.79 8.00 -92.71 -0.74 9.05 16 39 H 0.11 5.02 6.31 -2.91 -0.02 5.00 16 40 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.10 4.99 4.29 -2.91 -0.01 4.98 16 42 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 43 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -76.49 364.17 3.65 -72.85 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.51 Total: 26.04 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.93 Total: -23.22 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.34 Total: -78.26 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.11 Total: -42.07 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.68 Total: 44.67 kcal Total: -76.49 3.65 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184751027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.259 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds