Wall clock time and date at job start Tue Mar 31 2020 15:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 H 1.09008 * 109.46763 * 305.00097 * 3 2 1 5 5 C 1.50696 * 109.47303 * 185.00123 * 3 2 1 6 6 H 1.07997 * 120.00103 * 240.00235 * 5 3 2 7 7 C 1.37878 * 119.99600 * 59.99575 * 5 3 2 8 8 N 1.31506 * 120.00461 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99535 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47173 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47055 * 120.00072 * 9 7 5 12 12 H 1.48497 * 109.47075 * 239.99970 * 9 7 5 13 13 N 1.46499 * 109.47213 * 64.99532 * 3 2 1 14 14 C 1.34773 * 120.00418 * 275.00273 * 13 3 2 15 15 O 1.21591 * 120.00098 * 359.97438 * 14 13 3 16 16 C 1.47520 * 120.00131 * 180.02562 * 14 13 3 17 17 C 1.39990 * 120.59611 * 359.97438 * 16 14 13 18 18 C 1.38346 * 118.34786 * 180.02562 * 17 16 14 19 19 C 1.38361 * 119.46182 * 359.97438 * 18 17 16 20 20 N 1.31875 * 121.18904 * 359.72203 * 19 18 17 21 21 C 1.32260 * 121.79555 * 0.57099 * 20 19 18 22 22 O 1.35427 * 119.79860 * 179.70710 * 21 20 19 23 23 C 1.35890 * 118.00231 * 5.63600 * 22 21 20 24 24 C 1.38750 * 120.05680 * 70.52725 * 23 22 21 25 25 C 1.38138 * 119.94275 * 179.97438 * 24 23 22 26 26 C 1.38271 * 120.05970 * 0.02562 * 25 24 23 27 27 C 1.38263 * 120.11202 * 0.24744 * 26 25 24 28 28 C 1.38147 * 120.05901 * 359.49990 * 27 26 25 29 29 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46894 * 300.00267 * 1 2 3 31 31 H 1.09001 * 109.47351 * 60.00252 * 1 2 3 32 32 H 1.09003 * 109.46894 * 239.99733 * 2 1 3 33 33 H 1.09001 * 109.46610 * 119.99798 * 2 1 3 34 34 H 0.97006 * 119.99984 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99590 * 95.00335 * 13 3 2 36 36 H 1.08002 * 120.82890 * 0.02562 * 17 16 14 37 37 H 1.08003 * 120.26803 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.40512 * 180.02562 * 19 18 17 39 39 H 1.08007 * 120.02898 * 359.96253 * 24 23 22 40 40 H 1.08007 * 119.96851 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.94480 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.97556 * 179.72165 * 27 26 25 43 43 H 1.07995 * 120.02787 * 180.23392 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5988 1.5441 -0.1932 11 1 6.4962 -0.5192 -1.4627 12 1 6.3999 1.6155 -2.6092 13 7 1.6524 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6327 0.4317 16 6 0.0451 3.3245 2.6272 17 6 0.9293 3.3689 3.7116 18 6 0.5153 3.9993 4.8714 19 6 -0.7473 4.5627 4.9262 20 7 -1.5621 4.5146 3.8905 21 6 -1.2184 3.9195 2.7604 22 8 -2.0895 3.8889 1.7239 23 6 -3.2532 4.5796 1.8478 24 6 -3.2427 5.9669 1.8335 25 6 -4.4271 6.6667 1.9591 26 6 -5.6223 5.9858 2.0996 27 6 -5.6348 4.6034 2.1198 28 6 -4.4538 3.8987 1.9894 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0612 -2.9499 35 1 2.2719 2.1232 1.9977 36 1 1.9103 2.9221 3.6446 37 1 1.1722 4.0513 5.7271 38 1 -1.0694 5.0550 5.8319 39 1 -2.3093 6.4994 1.7244 40 1 -4.4195 7.7467 1.9476 41 1 -6.5472 6.5348 2.1981 42 1 -6.5692 4.0738 2.2342 43 1 -4.4646 2.8189 2.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192708672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:25 Heat of formation + Delta-G solvation = 0.902438 kcal Electronic energy + Delta-G solvation = -27207.009996 eV Core-core repulsion = 23411.100315 eV Total energy + Delta-G solvation = -3795.909682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16300 -39.53901 -38.48133 -37.50770 -35.00869 -33.05906 -32.08419 -31.27491 -31.03376 -30.65705 -29.53264 -27.00452 -24.56878 -24.13033 -22.92225 -22.73866 -21.89223 -20.61852 -19.40257 -18.94197 -17.79620 -17.17359 -16.55866 -16.15739 -15.95359 -15.36702 -14.99166 -14.93279 -14.64751 -14.42987 -13.99137 -13.94755 -13.70622 -13.53430 -12.94898 -12.71760 -12.66074 -12.40082 -12.24993 -11.97916 -11.72246 -11.49505 -11.25541 -10.98627 -10.96407 -10.84477 -10.30865 -10.19033 -9.95087 -9.91023 -9.60326 -9.06152 -9.04042 -8.99730 -8.88703 -8.50143 -8.46108 -7.79686 -6.12501 -4.22001 0.74058 1.02369 1.23009 1.28253 2.96731 3.23072 3.30550 3.31737 3.33396 3.78552 3.90730 4.08933 4.26082 4.39253 4.70625 4.78775 4.81633 4.85182 4.94811 5.04778 5.17327 5.19612 5.28062 5.43138 5.56766 5.64997 5.82696 5.88013 6.01267 6.22040 6.31250 6.35729 6.36928 6.42268 6.49533 6.69092 6.72532 7.06964 7.22463 7.38534 7.45119 7.45953 7.62172 7.70677 7.80507 7.91114 8.18485 8.65238 8.77937 9.12774 9.45364 10.92828 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003163 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.953575 B = 8851.041063 C = 9641.958529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.545 3.455 15 O -0.521 6.521 16 C -0.188 4.188 17 C -0.015 4.015 18 C -0.215 4.215 19 C 0.152 3.848 20 N -0.535 5.535 21 C 0.361 3.639 22 O -0.210 6.210 23 C 0.100 3.900 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.108 4.108 28 C -0.116 4.116 29 H 0.022 0.978 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.385 0.615 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.725 9.334 14.560 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.329 3.671 15 O -0.399 6.399 16 C -0.194 4.194 17 C -0.041 4.041 18 C -0.235 4.235 19 C -0.005 4.005 20 N -0.258 5.258 21 C 0.183 3.817 22 O -0.113 6.113 23 C 0.058 3.942 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.143 4.143 27 C -0.126 4.126 28 C -0.135 4.135 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.218 0.782 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.048 9.436 13.433 20.970 hybrid contribution 2.128 -0.329 0.354 2.182 sum -10.920 9.107 13.788 19.806 Atomic orbital electron populations 1.21842 0.98280 0.98016 1.01336 1.21936 0.92659 0.99725 1.02253 1.18811 0.94209 0.89178 0.80779 0.93135 1.21250 0.90652 1.39017 1.06317 0.92071 1.24882 0.98570 0.94823 0.95387 1.69904 1.35017 1.37568 1.09315 0.86413 0.84913 0.77760 0.78115 1.19762 1.20884 1.20892 1.46412 1.14178 1.56010 1.18619 1.17689 0.83310 0.79770 0.86296 1.90818 1.51015 1.58911 1.39116 1.20499 0.93340 1.07260 0.98287 1.21753 0.98600 0.92884 0.90833 1.21947 0.98575 1.03381 0.99624 1.22575 0.89445 0.93323 0.95181 1.67471 1.36749 1.21257 1.00301 1.19945 0.86971 0.89483 0.85347 1.84934 1.25960 1.65882 1.34509 1.18707 0.84777 0.90289 1.00457 1.21317 0.99203 0.93099 1.00021 1.20971 0.91901 0.99862 0.99847 1.21163 0.98008 0.94415 1.00687 1.20983 0.97414 0.94220 0.99996 1.21167 0.91551 1.00768 1.00006 0.95897 0.94312 0.93058 0.88251 0.95068 0.92601 0.78216 0.83417 0.84001 0.82156 0.85875 0.85653 0.85830 0.85449 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.81 2.24 -69.09 -0.15 6.66 16 4 H 0.05 1.48 7.58 -51.92 -0.39 1.08 16 5 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.70 -14.60 4.98 -55.98 -0.28 -14.88 16 14 C 0.55 11.33 6.34 -12.48 -0.08 11.26 16 15 O -0.52 -12.67 12.33 -16.48 -0.20 -12.87 16 16 C -0.19 -3.16 5.90 -104.68 -0.62 -3.78 16 17 C -0.01 -0.19 9.64 -38.89 -0.37 -0.56 16 18 C -0.21 -2.15 10.09 -39.50 -0.40 -2.54 16 19 C 0.15 1.64 11.17 -17.49 -0.20 1.44 16 20 N -0.54 -7.68 9.02 -12.97 -0.12 -7.79 16 21 C 0.36 6.10 7.34 -16.59 -0.12 5.98 16 22 O -0.21 -3.89 8.07 -23.90 -0.19 -4.08 16 23 C 0.10 1.57 5.24 -39.20 -0.21 1.36 16 24 C -0.12 -1.61 9.42 -39.43 -0.37 -1.98 16 25 C -0.11 -1.17 10.04 -39.61 -0.40 -1.56 16 26 C -0.12 -1.23 10.04 -39.56 -0.40 -1.63 16 27 C -0.11 -1.16 10.04 -39.61 -0.40 -1.55 16 28 C -0.12 -1.57 9.99 -39.43 -0.39 -1.97 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 31 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 32 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.38 6.78 6.64 -40.82 -0.27 6.51 16 36 H 0.15 1.56 6.52 -52.49 -0.34 1.22 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 43 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -32.40 360.95 -9.44 -41.84 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.36 Total: 8.38 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -4.33 Total: -7.49 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.23 Total: -46.61 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.40 Total: -16.96 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.40 -9.44 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192708672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.746 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds