Wall clock time and date at job start Tue Mar 31 2020 15:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 H 1.09008 * 109.46763 * 305.00097 * 3 2 1 5 5 C 1.50696 * 109.47303 * 185.00123 * 3 2 1 6 6 H 1.07997 * 120.00103 * 240.00235 * 5 3 2 7 7 C 1.37878 * 119.99600 * 59.99575 * 5 3 2 8 8 N 1.31506 * 120.00461 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99535 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47173 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47055 * 120.00072 * 9 7 5 12 12 H 1.48497 * 109.47075 * 239.99970 * 9 7 5 13 13 N 1.46499 * 109.47213 * 64.99532 * 3 2 1 14 14 C 1.34773 * 120.00418 * 275.00273 * 13 3 2 15 15 O 1.21591 * 120.00098 * 359.97438 * 14 13 3 16 16 C 1.47520 * 120.00131 * 180.02562 * 14 13 3 17 17 C 1.39990 * 120.59611 * 359.97438 * 16 14 13 18 18 C 1.38346 * 118.34786 * 180.02562 * 17 16 14 19 19 C 1.38361 * 119.46182 * 359.97438 * 18 17 16 20 20 N 1.31875 * 121.18904 * 359.72203 * 19 18 17 21 21 C 1.32260 * 121.79555 * 0.57099 * 20 19 18 22 22 O 1.35427 * 119.79860 * 179.70710 * 21 20 19 23 23 C 1.35890 * 118.00231 * 5.63600 * 22 21 20 24 24 C 1.38750 * 120.05680 * 70.52725 * 23 22 21 25 25 C 1.38138 * 119.94275 * 179.97438 * 24 23 22 26 26 C 1.38271 * 120.05970 * 0.02562 * 25 24 23 27 27 C 1.38263 * 120.11202 * 0.24744 * 26 25 24 28 28 C 1.38147 * 120.05901 * 359.49990 * 27 26 25 29 29 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46894 * 300.00267 * 1 2 3 31 31 H 1.09001 * 109.47351 * 60.00252 * 1 2 3 32 32 H 1.09003 * 109.46894 * 239.99733 * 2 1 3 33 33 H 1.09001 * 109.46610 * 119.99798 * 2 1 3 34 34 H 0.97006 * 119.99984 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99590 * 95.00335 * 13 3 2 36 36 H 1.08002 * 120.82890 * 0.02562 * 17 16 14 37 37 H 1.08003 * 120.26803 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.40512 * 180.02562 * 19 18 17 39 39 H 1.08007 * 120.02898 * 359.96253 * 24 23 22 40 40 H 1.08007 * 119.96851 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.94480 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.97556 * 179.72165 * 27 26 25 43 43 H 1.07995 * 120.02787 * 180.23392 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5988 1.5441 -0.1932 11 1 6.4962 -0.5192 -1.4627 12 1 6.3999 1.6155 -2.6092 13 7 1.6524 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6327 0.4317 16 6 0.0451 3.3245 2.6272 17 6 0.9293 3.3689 3.7116 18 6 0.5153 3.9993 4.8714 19 6 -0.7473 4.5627 4.9262 20 7 -1.5621 4.5146 3.8905 21 6 -1.2184 3.9195 2.7604 22 8 -2.0895 3.8889 1.7239 23 6 -3.2532 4.5796 1.8478 24 6 -3.2427 5.9669 1.8335 25 6 -4.4271 6.6667 1.9591 26 6 -5.6223 5.9858 2.0996 27 6 -5.6348 4.6034 2.1198 28 6 -4.4538 3.8987 1.9894 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0612 -2.9499 35 1 2.2719 2.1232 1.9977 36 1 1.9103 2.9221 3.6446 37 1 1.1722 4.0513 5.7271 38 1 -1.0694 5.0550 5.8319 39 1 -2.3093 6.4994 1.7244 40 1 -4.4195 7.7467 1.9476 41 1 -6.5472 6.5348 2.1981 42 1 -6.5692 4.0738 2.2342 43 1 -4.4646 2.8189 2.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192708672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:25 Heat of formation + Delta-G solvation = -19.680587 kcal Electronic energy + Delta-G solvation = -27207.902543 eV Core-core repulsion = 23411.100315 eV Total energy + Delta-G solvation = -3796.802229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27820 -40.75454 -39.90121 -38.51434 -36.90183 -34.56452 -33.76507 -32.54839 -32.11426 -31.93696 -30.56196 -28.94561 -25.84367 -25.29199 -24.65360 -23.68710 -22.87005 -22.27798 -21.20476 -20.03572 -19.35365 -18.29597 -17.76153 -17.45407 -17.25183 -17.03292 -16.29040 -16.20966 -15.98617 -15.82995 -15.31521 -15.14220 -14.88446 -14.60088 -14.43202 -14.22654 -13.81708 -13.64770 -13.47814 -13.40263 -13.22292 -13.17886 -12.87075 -12.70904 -12.57049 -12.16695 -12.07125 -11.90026 -11.61776 -11.10602 -11.02134 -10.99952 -10.59645 -10.49585 -9.97751 -9.90129 -9.67061 -9.43596 -8.15860 -6.33590 -0.34280 0.06763 0.25922 0.36548 1.44637 1.45536 1.57511 1.96965 2.01441 2.32249 2.54328 2.80652 2.85187 3.13750 3.27205 3.74825 3.81775 3.91259 3.92090 3.97954 4.19259 4.21418 4.44921 4.45978 4.49509 4.53051 4.53922 4.72212 4.74655 4.87848 5.00666 5.04179 5.07477 5.23375 5.36489 5.41570 5.42048 5.45263 5.48931 5.54047 5.61096 5.77575 5.86024 5.92223 6.15393 6.43152 6.72708 6.74637 6.97244 7.33054 7.55563 8.89988 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003163 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.953575 B = 8851.041063 C = 9641.958529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.698 5.698 14 C 0.543 3.457 15 O -0.569 6.569 16 C -0.223 4.223 17 C -0.011 4.011 18 C -0.193 4.193 19 C 0.158 3.842 20 N -0.546 5.546 21 C 0.341 3.659 22 O -0.247 6.247 23 C 0.066 3.934 24 C -0.136 4.136 25 C -0.103 4.103 26 C -0.116 4.116 27 C -0.102 4.102 28 C -0.139 4.139 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.168 0.832 37 H 0.191 0.809 38 H 0.206 0.794 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 10.805 18.185 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.181 1.181 11 H -0.204 1.204 12 H -0.212 1.212 13 N -0.348 5.348 14 C 0.330 3.670 15 O -0.449 6.449 16 C -0.229 4.229 17 C -0.036 4.036 18 C -0.212 4.212 19 C 0.001 3.999 20 N -0.269 5.269 21 C 0.164 3.836 22 O -0.151 6.151 23 C 0.024 3.976 24 C -0.155 4.155 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.120 4.120 28 C -0.158 4.158 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.185 0.815 37 H 0.208 0.792 38 H 0.223 0.777 39 H 0.130 0.870 40 H 0.173 0.827 41 H 0.181 0.819 42 H 0.176 0.824 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.937 10.920 17.106 24.068 hybrid contribution 1.988 -0.687 -0.660 2.204 sum -10.950 10.233 16.447 22.251 Atomic orbital electron populations 1.21662 0.97362 0.98954 0.99954 1.21782 0.93347 0.99202 1.01454 1.18381 0.93855 0.89038 0.80993 0.98682 1.21588 0.91090 1.38914 1.06824 0.90717 1.25801 1.03448 0.94361 0.94976 1.70066 1.37076 1.38371 1.09892 0.85296 0.78944 0.77830 0.78247 1.18132 1.20427 1.21221 1.46104 1.14892 1.56056 1.17784 1.18291 0.82407 0.78902 0.87358 1.90783 1.52255 1.60595 1.41313 1.20223 0.94941 1.09930 0.97817 1.22067 0.98544 0.92650 0.90385 1.22443 0.98581 1.00585 0.99634 1.23497 0.89333 0.91817 0.95262 1.67558 1.37770 1.21309 1.00294 1.20119 0.86968 0.90430 0.86058 1.84868 1.27298 1.66843 1.36094 1.19119 0.84557 0.91268 1.02644 1.21364 1.00122 0.92472 1.01515 1.21352 0.91142 1.01318 0.98275 1.21630 0.99084 0.94142 0.98530 1.21370 0.97313 0.94971 0.98325 1.21310 0.92237 1.00688 1.01555 0.93555 0.94362 0.95798 0.90810 0.93778 0.92619 0.76220 0.81476 0.79152 0.77749 0.87011 0.82728 0.81894 0.82431 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.51 71.98 0.61 -5.27 16 2 C -0.12 -6.05 5.45 30.60 0.17 -5.88 16 3 C 0.28 14.79 2.24 44.24 0.10 14.89 16 4 H 0.00 -0.30 7.58 -2.38 -0.02 -0.32 16 5 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 6 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -53.00 11.29 21.45 0.24 -52.76 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 10 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.70 -30.10 4.98 -449.29 -2.24 -32.34 16 14 C 0.54 24.01 6.34 86.69 0.55 24.56 16 15 O -0.57 -30.22 12.33 16.81 0.21 -30.01 16 16 C -0.22 -7.74 5.90 -19.91 -0.12 -7.86 16 17 C -0.01 -0.25 9.64 22.72 0.22 -0.03 16 18 C -0.19 -3.07 10.09 22.32 0.23 -2.84 16 19 C 0.16 2.89 11.17 84.72 0.95 3.83 16 20 N -0.55 -15.39 9.02 -307.96 -2.78 -18.17 16 21 C 0.34 12.09 7.34 85.13 0.63 12.72 16 22 O -0.25 -10.01 8.07 -9.75 -0.08 -10.08 16 23 C 0.07 2.20 5.24 22.51 0.12 2.32 16 24 C -0.14 -3.85 9.42 22.37 0.21 -3.64 16 25 C -0.10 -2.08 10.04 22.25 0.22 -1.85 16 26 C -0.12 -1.98 10.04 22.28 0.22 -1.76 16 27 C -0.10 -2.04 10.04 22.25 0.22 -1.82 16 28 C -0.14 -3.95 9.99 22.37 0.22 -3.73 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.82 5.65 -2.39 -0.01 1.81 16 31 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 32 H 0.07 4.16 5.95 -2.39 -0.01 4.15 16 33 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 35 H 0.40 14.16 6.64 -92.71 -0.62 13.54 16 36 H 0.17 3.11 6.52 -2.91 -0.02 3.09 16 37 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.11 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.12 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -78.55 360.95 3.03 -75.53 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.43 Total: 27.67 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.22 Total: -3.89 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -4.77 Total: -103.27 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: 0.13 Total: -40.09 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -78.55 3.03 -75.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192708672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.844 kcal (2) G-P(sol) polarization free energy of solvation -78.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds