Wall clock time and date at job start Tue Mar 31 2020 15:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47228 * 2 1 4 4 C 1.53001 * 109.46821 * 240.00270 * 2 1 3 5 5 O 1.45198 * 109.47582 * 120.00449 * 2 1 3 6 6 C 1.34739 * 116.99925 * 59.99174 * 5 2 1 7 7 O 1.21467 * 119.99767 * 0.02562 * 6 5 2 8 8 C 1.47806 * 119.99923 * 179.97438 * 6 5 2 9 9 N 1.32691 * 119.84012 * 0.02562 * 8 6 5 10 10 C 1.31473 * 121.79383 * 179.97438 * 9 8 6 11 11 C 1.38835 * 121.25335 * 0.02562 * 10 9 8 12 12 C 1.38177 * 119.52805 * 0.02562 * 11 10 9 13 13 C 1.40166 * 118.35169 * 359.97438 * 12 11 10 14 14 C 1.47617 * 120.62498 * 180.02562 * 13 12 11 15 15 C 1.39779 * 120.65490 * 64.72065 * 14 13 12 16 16 C 1.38364 * 118.46646 * 179.77502 * 15 14 13 17 17 C 1.39090 * 119.72967 * 0.48606 * 16 15 14 18 18 N 1.31266 * 121.35557 * 359.76193 * 17 16 15 19 19 C 1.33695 * 121.64916 * 359.97438 * 18 17 16 20 20 C 1.40792 * 119.94166 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99785 * 179.97438 * 20 19 18 22 22 C 1.40221 * 120.00030 * 359.97418 * 20 19 18 23 23 N 1.30651 * 120.00177 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46952 * 60.00506 * 24 22 20 26 26 H 1.48497 * 109.47114 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47085 * 300.00548 * 24 22 20 28 28 H 1.08995 * 109.46809 * 299.99918 * 1 2 3 29 29 H 1.09004 * 109.46932 * 59.99531 * 1 2 3 30 30 H 1.08997 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47547 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47547 * 300.00093 * 3 2 1 33 33 H 1.08995 * 109.47158 * 60.00296 * 3 2 1 34 34 H 1.08999 * 109.47491 * 300.00353 * 4 2 1 35 35 H 1.08999 * 109.47433 * 59.99953 * 4 2 1 36 36 H 1.09003 * 109.47647 * 179.97438 * 4 2 1 37 37 H 1.07991 * 119.37298 * 180.28623 * 10 9 8 38 38 H 1.08003 * 120.23278 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.82297 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.76669 * 0.02562 * 15 14 13 41 41 H 1.07997 * 120.13732 * 180.22012 * 16 15 14 42 42 H 1.07994 * 119.32002 * 179.77859 * 17 16 15 43 43 H 0.97000 * 120.00276 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6520 -1.9733 1.3383 7 8 0.9515 -2.5104 0.5039 8 6 2.1081 -2.7338 2.5208 9 7 2.8737 -2.1441 3.4301 10 6 3.3006 -2.7838 4.4964 11 6 2.9682 -4.1131 4.7201 12 6 2.1742 -4.7796 3.8065 13 6 1.7292 -4.0801 2.6763 14 6 0.8781 -4.7429 1.6686 15 6 -0.4064 -5.1837 1.9994 16 6 -1.1669 -5.7950 1.0183 17 6 -0.6396 -5.9649 -0.2574 18 7 0.5699 -5.5521 -0.5571 19 6 1.3498 -4.9502 0.3467 20 6 2.6414 -4.5212 -0.0139 21 1 3.2719 -4.0345 0.7153 22 6 3.1090 -4.7260 -1.3199 23 7 2.3459 -5.3143 -2.2023 24 14 4.8224 -4.1562 -1.7986 25 1 5.8277 -4.8404 -0.9463 26 1 5.0738 -4.4872 -3.2242 27 1 4.9275 -2.6875 -1.6060 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2497 37 1 3.9182 -2.2643 5.2139 38 1 3.3277 -4.6226 5.6019 39 1 1.9025 -5.8136 3.9599 40 1 -0.7979 -5.0466 2.9966 41 1 -2.1643 -6.1426 1.2434 42 1 -1.2376 -6.4461 -1.0171 43 1 2.6692 -5.4556 -3.1058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242872097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:02 Heat of formation + Delta-G solvation = -6.976366 kcal Electronic energy + Delta-G solvation = -29136.896906 eV Core-core repulsion = 25340.645573 eV Total energy + Delta-G solvation = -3796.251332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.41800 -39.23201 -37.92954 -36.16059 -33.70191 -33.56547 -32.73001 -31.59124 -30.29813 -28.85840 -27.10665 -26.95184 -25.88920 -24.55755 -23.43695 -21.66946 -21.34004 -20.38624 -19.18437 -17.53726 -17.28328 -16.37521 -15.86442 -15.58079 -15.39530 -15.20468 -14.64277 -14.35609 -14.24077 -13.84807 -13.65901 -13.20407 -13.10811 -12.87509 -12.66555 -12.30226 -12.18435 -12.05146 -11.80877 -11.69264 -11.49848 -11.43095 -11.17797 -11.15152 -11.00783 -10.91252 -10.74885 -10.48625 -10.11369 -9.80431 -9.50584 -9.46694 -9.32174 -9.16976 -8.60399 -8.11559 -7.55823 -7.29864 -6.46789 -4.55313 1.08404 1.65612 2.73017 2.96095 3.01968 3.05835 3.16550 3.24011 3.26618 3.88646 4.36838 4.67396 4.71184 5.10282 5.12431 5.17641 5.26398 5.33596 5.37730 5.39491 5.72597 5.75315 5.86125 5.93742 5.96942 6.02993 6.06389 6.08396 6.16728 6.26118 6.29643 6.33559 6.43115 6.54182 6.62366 6.66904 6.85078 6.91365 6.99777 7.04893 7.20332 7.29178 7.52805 7.67837 7.99224 8.15190 8.19066 8.59013 8.72555 8.89982 10.07752 10.24173 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.007685 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.261668 B = 3642.494695 C = 4578.570982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 C -0.136 4.136 4 C -0.185 4.185 5 O -0.341 6.341 6 C 0.510 3.490 7 O -0.434 6.434 8 C 0.087 3.913 9 N -0.440 5.440 10 C 0.064 3.936 11 C -0.146 4.146 12 C -0.094 4.094 13 C 0.043 3.957 14 C -0.236 4.236 15 C -0.029 4.029 16 C -0.321 4.321 17 C 0.136 3.864 18 N -0.477 5.477 19 C 0.309 3.691 20 C -0.407 4.407 21 H 0.073 0.927 22 C 0.075 3.925 23 N -0.703 5.703 24 Si 0.890 3.110 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.261 1.261 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 6.237 6.324 8.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.082 3.918 3 C -0.193 4.193 4 C -0.242 4.242 5 O -0.260 6.260 6 C 0.350 3.650 7 O -0.315 6.315 8 C -0.049 4.049 9 N -0.150 5.150 10 C -0.097 4.097 11 C -0.166 4.166 12 C -0.120 4.120 13 C 0.040 3.960 14 C -0.242 4.242 15 C -0.053 4.053 16 C -0.344 4.344 17 C -0.033 4.033 18 N -0.188 5.188 19 C 0.186 3.814 20 C -0.437 4.437 21 H 0.091 0.909 22 C -0.152 4.152 23 N -0.323 5.323 24 Si 0.713 3.287 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.185 1.185 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.195 6.810 4.753 8.390 hybrid contribution 0.190 -0.475 0.739 0.898 sum 1.386 6.335 5.491 8.497 Atomic orbital electron populations 1.22461 0.94587 1.04919 1.01757 1.22025 0.93984 0.91872 0.83908 1.21796 1.02034 0.93207 1.02289 1.22525 1.01493 1.04328 0.95863 1.86662 1.70169 1.25065 1.44070 1.20387 0.79336 0.80164 0.85064 1.90923 1.32474 1.68207 1.39941 1.20296 0.99681 0.91039 0.93891 1.67502 1.07648 1.38450 1.01442 1.22601 0.99781 0.92215 0.95124 1.22227 0.98336 0.96134 0.99876 1.21791 0.96612 1.00246 0.93313 1.19591 0.92674 0.90953 0.92749 1.19010 0.96075 1.13747 0.95319 1.20721 0.92894 0.94819 0.96876 1.21121 1.01120 1.15654 0.96491 1.22562 0.93062 0.94275 0.93364 1.68720 1.03557 1.13329 1.33175 1.18125 0.91977 0.86434 0.84881 1.19401 0.97944 1.30807 0.95572 0.90866 1.26007 0.98575 0.94030 0.96552 1.70062 1.34376 1.24656 1.03202 0.86649 0.82813 0.80736 0.78483 1.18751 1.19838 1.18495 0.92575 0.91673 0.89484 0.91742 0.90918 0.91872 0.88294 0.92000 0.92440 0.82910 0.84944 0.84515 0.88987 0.88839 0.86578 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.37 37.16 0.31 -2.63 16 2 C 0.12 2.04 1.13 -90.62 -0.10 1.93 16 3 C -0.14 -1.82 8.85 37.15 0.33 -1.49 16 4 C -0.19 -3.40 8.37 37.16 0.31 -3.09 16 5 O -0.34 -6.91 9.70 -40.60 -0.39 -7.31 16 6 C 0.51 11.33 6.37 34.64 0.22 11.55 16 7 O -0.43 -10.44 7.39 -19.24 -0.14 -10.58 16 8 C 0.09 1.86 5.78 -82.65 -0.48 1.38 16 9 N -0.44 -8.44 10.11 -9.51 -0.10 -8.53 16 10 C 0.06 0.97 11.17 -17.48 -0.20 0.78 16 11 C -0.15 -2.06 10.10 -39.38 -0.40 -2.46 16 12 C -0.09 -1.61 9.91 -38.88 -0.39 -2.00 16 13 C 0.04 0.92 4.49 -104.41 -0.47 0.45 16 14 C -0.24 -5.58 3.99 -104.10 -0.42 -6.00 16 15 C -0.03 -0.63 9.89 -38.96 -0.39 -1.02 16 16 C -0.32 -7.10 10.10 -39.22 -0.40 -7.49 16 17 C 0.14 3.27 11.17 -17.48 -0.20 3.07 16 18 N -0.48 -12.85 7.85 -10.90 -0.09 -12.94 16 19 C 0.31 8.14 4.81 -84.70 -0.41 7.73 16 20 C -0.41 -10.68 6.94 -37.87 -0.26 -10.95 16 21 H 0.07 1.92 5.90 -52.49 -0.31 1.61 16 22 C 0.08 1.90 5.50 -17.31 -0.10 1.81 16 23 N -0.70 -18.33 11.46 55.56 0.64 -17.69 16 24 Si 0.89 18.92 29.56 -169.99 -5.03 13.90 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.69 5.88 -51.93 -0.31 1.39 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.22 5.88 -51.93 -0.31 1.91 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.14 2.11 8.06 -52.48 -0.42 1.69 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 43 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -30.26 355.63 -8.31 -38.57 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.55 Total: 7.65 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.01 Total: -8.42 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.45 Total: -39.16 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.54 Total: -17.89 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.26 -8.31 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242872097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.590 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds