Wall clock time and date at job start Tue Mar 31 2020 15:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47228 * 2 1 4 4 C 1.53001 * 109.46821 * 240.00270 * 2 1 3 5 5 O 1.45198 * 109.47582 * 120.00449 * 2 1 3 6 6 C 1.34739 * 116.99925 * 59.99174 * 5 2 1 7 7 O 1.21467 * 119.99767 * 0.02562 * 6 5 2 8 8 C 1.47806 * 119.99923 * 179.97438 * 6 5 2 9 9 N 1.32691 * 119.84012 * 0.02562 * 8 6 5 10 10 C 1.31473 * 121.79383 * 179.97438 * 9 8 6 11 11 C 1.38835 * 121.25335 * 0.02562 * 10 9 8 12 12 C 1.38177 * 119.52805 * 0.02562 * 11 10 9 13 13 C 1.40166 * 118.35169 * 359.97438 * 12 11 10 14 14 C 1.47617 * 120.62498 * 180.02562 * 13 12 11 15 15 C 1.39779 * 120.65490 * 64.72065 * 14 13 12 16 16 C 1.38364 * 118.46646 * 179.77502 * 15 14 13 17 17 C 1.39090 * 119.72967 * 0.48606 * 16 15 14 18 18 N 1.31266 * 121.35557 * 359.76193 * 17 16 15 19 19 C 1.33695 * 121.64916 * 359.97438 * 18 17 16 20 20 C 1.40792 * 119.94166 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99785 * 179.97438 * 20 19 18 22 22 C 1.40221 * 120.00030 * 359.97418 * 20 19 18 23 23 N 1.30651 * 120.00177 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46952 * 60.00506 * 24 22 20 26 26 H 1.48497 * 109.47114 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47085 * 300.00548 * 24 22 20 28 28 H 1.08995 * 109.46809 * 299.99918 * 1 2 3 29 29 H 1.09004 * 109.46932 * 59.99531 * 1 2 3 30 30 H 1.08997 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47547 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47547 * 300.00093 * 3 2 1 33 33 H 1.08995 * 109.47158 * 60.00296 * 3 2 1 34 34 H 1.08999 * 109.47491 * 300.00353 * 4 2 1 35 35 H 1.08999 * 109.47433 * 59.99953 * 4 2 1 36 36 H 1.09003 * 109.47647 * 179.97438 * 4 2 1 37 37 H 1.07991 * 119.37298 * 180.28623 * 10 9 8 38 38 H 1.08003 * 120.23278 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.82297 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.76669 * 0.02562 * 15 14 13 41 41 H 1.07997 * 120.13732 * 180.22012 * 16 15 14 42 42 H 1.07994 * 119.32002 * 179.77859 * 17 16 15 43 43 H 0.97000 * 120.00276 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6520 -1.9733 1.3383 7 8 0.9515 -2.5104 0.5039 8 6 2.1081 -2.7338 2.5208 9 7 2.8737 -2.1441 3.4301 10 6 3.3006 -2.7838 4.4964 11 6 2.9682 -4.1131 4.7201 12 6 2.1742 -4.7796 3.8065 13 6 1.7292 -4.0801 2.6763 14 6 0.8781 -4.7429 1.6686 15 6 -0.4064 -5.1837 1.9994 16 6 -1.1669 -5.7950 1.0183 17 6 -0.6396 -5.9649 -0.2574 18 7 0.5699 -5.5521 -0.5571 19 6 1.3498 -4.9502 0.3467 20 6 2.6414 -4.5212 -0.0139 21 1 3.2719 -4.0345 0.7153 22 6 3.1090 -4.7260 -1.3199 23 7 2.3459 -5.3143 -2.2023 24 14 4.8224 -4.1562 -1.7986 25 1 5.8277 -4.8404 -0.9463 26 1 5.0738 -4.4872 -3.2242 27 1 4.9275 -2.6875 -1.6060 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2497 37 1 3.9182 -2.2643 5.2139 38 1 3.3277 -4.6226 5.6019 39 1 1.9025 -5.8136 3.9599 40 1 -0.7979 -5.0466 2.9966 41 1 -2.1643 -6.1426 1.2434 42 1 -1.2376 -6.4461 -1.0171 43 1 2.6692 -5.4556 -3.1058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242872097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:01 Heat of formation + Delta-G solvation = -23.919714 kcal Electronic energy + Delta-G solvation = -29137.631624 eV Core-core repulsion = 25340.645573 eV Total energy + Delta-G solvation = -3796.986051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93006 -40.68471 -39.66502 -37.70784 -35.53924 -35.00210 -34.28124 -32.96049 -32.12179 -30.50569 -28.38447 -28.27699 -27.69796 -26.05610 -24.92633 -23.31916 -22.98786 -21.98050 -20.62621 -19.39416 -18.76550 -17.87315 -17.47707 -17.06861 -16.83134 -16.78172 -16.18842 -15.99948 -15.95990 -15.27581 -15.09094 -14.61222 -14.53661 -14.47527 -14.09855 -13.94302 -13.78038 -13.30637 -13.25235 -13.11950 -13.00228 -12.85534 -12.81134 -12.77367 -12.74152 -12.41038 -12.24882 -12.10623 -11.85400 -11.35600 -11.17703 -10.99346 -10.85268 -10.57028 -10.10061 -9.88184 -9.39023 -9.08524 -8.30743 -6.44786 -0.33075 0.29093 0.96001 1.19865 1.26792 1.36041 1.46320 1.71368 1.80312 2.12624 2.84453 2.95543 3.34645 3.79236 3.82068 3.87627 3.93201 3.97819 4.00797 4.06753 4.24420 4.35089 4.39672 4.51877 4.57295 4.60548 4.73825 4.77294 4.79606 4.84530 4.88617 4.90336 5.02298 5.10508 5.13183 5.20878 5.28147 5.31634 5.40205 5.49677 5.64631 5.67547 5.79356 5.89841 6.15043 6.29823 6.73298 6.81759 7.02932 7.18770 8.23957 8.42155 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.007685 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.261668 B = 3642.494695 C = 4578.570982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 C -0.128 4.128 4 C -0.178 4.178 5 O -0.349 6.349 6 C 0.503 3.497 7 O -0.463 6.463 8 C 0.060 3.940 9 N -0.461 5.461 10 C 0.072 3.928 11 C -0.119 4.119 12 C -0.098 4.098 13 C 0.011 3.989 14 C -0.231 4.231 15 C -0.043 4.043 16 C -0.313 4.313 17 C 0.110 3.890 18 N -0.516 5.516 19 C 0.289 3.711 20 C -0.430 4.430 21 H 0.063 0.937 22 C 0.038 3.962 23 N -0.742 5.742 24 Si 0.946 3.054 25 H -0.257 1.257 26 H -0.260 1.260 27 H -0.265 1.265 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.200 0.800 38 H 0.187 0.813 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 7.459 8.994 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 C -0.185 4.185 4 C -0.235 4.235 5 O -0.267 6.267 6 C 0.345 3.655 7 O -0.347 6.347 8 C -0.074 4.074 9 N -0.173 5.173 10 C -0.090 4.090 11 C -0.138 4.138 12 C -0.124 4.124 13 C 0.008 3.992 14 C -0.236 4.236 15 C -0.067 4.067 16 C -0.336 4.336 17 C -0.057 4.057 18 N -0.228 5.228 19 C 0.164 3.836 20 C -0.461 4.461 21 H 0.081 0.919 22 C -0.185 4.185 23 N -0.364 5.364 24 Si 0.767 3.233 25 H -0.181 1.181 26 H -0.183 1.183 27 H -0.189 1.189 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.217 0.783 38 H 0.205 0.795 39 H 0.170 0.830 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.191 8.029 7.426 11.154 hybrid contribution -0.182 -0.817 0.150 0.850 sum 2.009 7.212 7.576 10.651 Atomic orbital electron populations 1.22376 0.94117 1.02903 1.03567 1.22409 0.94575 0.93508 0.82329 1.21809 1.02068 0.90342 1.04276 1.22426 1.00832 1.02235 0.98042 1.86649 1.70268 1.24466 1.45323 1.20799 0.78844 0.80602 0.85254 1.90918 1.33899 1.68802 1.41057 1.20245 1.01271 0.91359 0.94540 1.67527 1.08019 1.39282 1.02432 1.23516 0.98350 0.92974 0.94142 1.22757 0.95404 0.95484 1.00144 1.22064 0.96839 1.01012 0.92493 1.19668 0.94077 0.91440 0.94006 1.19296 0.96910 1.12312 0.95125 1.21099 0.92535 0.94769 0.98272 1.21447 1.02195 1.14321 0.95635 1.22948 0.92885 0.94925 0.94899 1.68627 1.04898 1.14779 1.34526 1.18416 0.92269 0.86734 0.86136 1.19378 0.98362 1.32280 0.96060 0.91923 1.26680 1.01783 0.93799 0.96232 1.70149 1.36064 1.26572 1.03584 0.85803 0.78732 0.79846 0.78897 1.18122 1.18337 1.18913 0.91418 0.89091 0.93336 0.91711 0.88054 0.90720 0.92828 0.89384 0.93221 0.78333 0.79534 0.82993 0.86166 0.85813 0.85021 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.66 8.37 71.98 0.60 -5.06 16 2 C 0.11 3.71 1.13 -10.80 -0.01 3.69 16 3 C -0.13 -3.16 8.85 71.98 0.64 -2.52 16 4 C -0.18 -6.77 8.37 71.98 0.60 -6.16 16 5 O -0.35 -14.45 9.70 -56.49 -0.55 -14.99 16 6 C 0.50 23.27 6.37 70.35 0.45 23.72 16 7 O -0.46 -23.70 7.39 19.94 0.15 -23.56 16 8 C 0.06 2.59 5.78 42.15 0.24 2.83 16 9 N -0.46 -17.04 10.11 -183.99 -1.86 -18.90 16 10 C 0.07 1.90 11.17 84.89 0.95 2.84 16 11 C -0.12 -2.81 10.10 22.40 0.23 -2.58 16 12 C -0.10 -3.15 9.91 22.72 0.23 -2.93 16 13 C 0.01 0.48 4.49 -19.73 -0.09 0.39 16 14 C -0.23 -11.22 3.99 -19.53 -0.08 -11.30 16 15 C -0.04 -1.89 9.89 22.67 0.22 -1.66 16 16 C -0.31 -13.90 10.10 22.50 0.23 -13.68 16 17 C 0.11 5.46 11.17 84.98 0.95 6.41 16 18 N -0.52 -29.32 7.85 -188.39 -1.48 -30.80 16 19 C 0.29 15.96 4.81 40.38 0.19 16.16 16 20 C -0.43 -23.78 6.94 23.38 0.16 -23.62 16 21 H 0.06 3.47 5.90 -2.91 -0.02 3.45 16 22 C 0.04 2.02 5.50 85.35 0.47 2.49 16 23 N -0.74 -40.93 11.46 21.87 0.25 -40.68 16 24 Si 0.95 40.34 29.56 68.60 2.03 42.36 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 2.43 8.14 -2.38 -0.02 2.42 16 30 H 0.05 1.98 5.88 -2.39 -0.01 1.97 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 2.57 5.88 -2.39 -0.01 2.55 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.13 5.84 8.06 -2.91 -0.02 5.82 16 43 H 0.28 13.97 8.29 -92.71 -0.77 13.21 16 Total: -1.00 -72.82 355.63 5.55 -67.27 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 1.03 Total: 30.29 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 5.98 Total: -10.98 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -3.09 Total: -90.39 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.40 Total: -38.55 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -72.82 5.55 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242872097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.351 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds