Wall clock time and date at job start Tue Mar 31 2020 14:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.46896 * 2 1 4 4 C 1.38138 * 120.03367 * 265.29756 * 3 2 1 5 5 C 1.38264 * 120.06833 * 180.27735 * 4 3 2 6 6 C 1.38299 * 120.14121 * 359.72446 * 5 4 3 7 7 C 1.38094 * 120.07106 * 359.97438 * 6 5 4 8 8 C 1.38846 * 120.04077 * 85.00051 * 3 2 1 9 9 N 1.39933 * 120.06600 * 0.02562 * 8 3 2 10 10 C 1.34773 * 120.00454 * 145.01136 * 9 8 3 11 11 O 1.21600 * 120.00023 * 4.49962 * 10 9 8 12 12 N 1.34781 * 120.00369 * 184.50256 * 10 9 8 13 13 C 1.40012 * 119.99686 * 184.49637 * 12 10 9 14 14 C 1.38914 * 120.00703 * 324.86876 * 13 12 10 15 15 C 1.38003 * 119.99966 * 180.27337 * 14 13 12 16 16 C 1.38907 * 120.00191 * 359.50327 * 15 14 13 17 17 O 1.35782 * 119.99944 * 180.22777 * 16 15 14 18 18 C 1.34818 * 116.99829 * 185.93793 * 17 16 15 19 19 H 1.07993 * 120.00183 * 5.40311 * 18 17 16 20 20 C 1.38628 * 119.99665 * 185.39851 * 18 17 16 21 21 N 1.31574 * 120.00198 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99815 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47264 * 89.99572 * 22 20 18 24 24 H 1.48502 * 109.47149 * 210.00175 * 22 20 18 25 25 H 1.48502 * 109.47093 * 329.99882 * 22 20 18 26 26 C 1.38903 * 120.00050 * 0.49591 * 16 15 14 27 27 C 1.38011 * 120.00320 * 359.75534 * 26 16 15 28 28 H 1.08991 * 109.47100 * 60.00179 * 1 2 3 29 29 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46935 * 300.00106 * 1 2 3 31 31 H 1.09000 * 109.47183 * 239.99564 * 2 1 3 32 32 H 1.09000 * 109.47055 * 119.99612 * 2 1 3 33 33 H 1.08002 * 119.96962 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.92667 * 179.74499 * 5 4 3 35 35 H 1.08006 * 119.96342 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.03349 * 180.02562 * 7 6 5 37 37 H 0.97004 * 120.00188 * 325.00247 * 9 8 3 38 38 H 0.96997 * 119.99570 * 4.49973 * 12 10 9 39 39 H 1.07996 * 119.99857 * 0.02562 * 14 13 12 40 40 H 1.08000 * 120.00071 * 179.74816 * 15 14 13 41 41 H 0.97004 * 119.99571 * 180.02562 * 21 20 18 42 42 H 1.07997 * 119.99711 * 179.72532 * 26 16 15 43 43 H 1.07998 * 120.00321 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3552 2.0400 -1.1919 5 6 2.8215 3.3416 -1.1922 6 6 2.9608 4.0297 -0.0007 7 6 2.6339 3.4184 1.1937 8 6 2.1652 2.1110 1.1974 9 7 1.8336 1.4886 2.4060 10 6 2.5395 1.7623 3.5209 11 8 3.4109 2.6100 3.4961 12 7 2.2796 1.0964 4.6636 13 6 2.9466 1.4451 5.8442 14 6 4.2689 1.8682 5.7961 15 6 4.9279 2.2065 6.9604 16 6 4.2659 2.1340 8.1795 17 8 4.9129 2.4713 9.3245 18 6 4.2560 2.2622 10.4831 19 1 3.2977 1.7642 10.4782 20 6 4.8106 2.6865 11.6807 21 7 5.9779 3.2936 11.6866 22 14 3.9007 2.3962 13.2860 23 1 4.3017 1.0831 13.8519 24 1 4.2395 3.4746 14.2491 25 1 2.4373 2.4001 13.0333 26 6 2.9437 1.7110 8.2276 27 6 2.2861 1.3676 7.0639 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2471 1.5055 -2.1241 34 1 3.0772 3.8221 -2.1251 35 1 3.3250 5.0465 -0.0044 36 1 2.7425 3.9564 2.1238 37 1 1.0955 0.8601 2.4414 38 1 1.6306 0.3755 4.6679 39 1 4.7824 1.9284 4.8479 40 1 5.9572 2.5315 6.9235 41 1 6.3661 3.5901 12.5247 42 1 2.4304 1.6504 9.1759 43 1 1.2582 1.0384 7.1014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328225391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:15 Heat of formation + Delta-G solvation = 0.826836 kcal Electronic energy + Delta-G solvation = -26062.949934 eV Core-core repulsion = 22267.036974 eV Total energy + Delta-G solvation = -3795.912960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00396 -39.46980 -38.59172 -36.65347 -35.06164 -34.03702 -34.03097 -32.18663 -30.22932 -30.08064 -29.34251 -27.58772 -25.35453 -24.16557 -23.41028 -22.29516 -21.57609 -21.00769 -20.52317 -18.65310 -17.93097 -17.83806 -17.05930 -16.26475 -15.93040 -15.71159 -15.14846 -14.58986 -14.57198 -14.32560 -14.20389 -13.90487 -13.84310 -13.60686 -13.48388 -13.34554 -12.81356 -12.57316 -12.40592 -12.15955 -11.90090 -11.77757 -11.59525 -11.55770 -11.27599 -11.18544 -11.07154 -10.68363 -10.47506 -10.44789 -9.92379 -9.66488 -9.25023 -8.87382 -8.73309 -8.21457 -8.20407 -6.93948 -6.44428 -4.02578 1.15875 1.29250 2.13183 2.21667 2.57306 3.09612 3.13265 3.17733 3.18695 3.69200 3.96657 4.08928 4.46115 4.56940 4.57614 4.86888 4.94163 5.02444 5.10423 5.12846 5.26217 5.31963 5.35004 5.47093 5.53431 5.55687 5.64053 5.77334 5.82587 5.92968 6.06692 6.13571 6.20566 6.24212 6.32188 6.39845 6.49429 6.67994 6.82702 6.89733 6.95502 7.09973 7.20457 7.23167 7.42452 7.78508 7.89771 7.99892 8.51775 9.00842 9.71522 10.73540 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.002178 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.894689 B =12854.919255 C =13504.769173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.117 4.117 8 C 0.171 3.829 9 N -0.687 5.687 10 C 0.698 3.302 11 O -0.557 6.557 12 N -0.669 5.669 13 C 0.048 3.952 14 C -0.065 4.065 15 C -0.179 4.179 16 C 0.147 3.853 17 O -0.176 6.176 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.219 4.219 27 C -0.089 4.089 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.404 0.596 38 H 0.399 0.601 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.270 0.730 42 H 0.132 0.868 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.914 -6.145 -22.969 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.156 4.156 6 C -0.125 4.125 7 C -0.137 4.137 8 C 0.076 3.924 9 N -0.335 5.335 10 C 0.399 3.601 11 O -0.432 6.432 12 N -0.315 5.315 13 C -0.044 4.044 14 C -0.086 4.086 15 C -0.198 4.198 16 C 0.093 3.907 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.239 4.239 27 C -0.110 4.110 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.239 0.761 38 H 0.233 0.767 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.080 0.920 42 H 0.149 0.851 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.736 -5.193 -22.686 25.630 hybrid contribution -1.241 -0.782 0.845 1.693 sum -11.977 -5.975 -21.841 25.616 Atomic orbital electron populations 1.21785 0.94783 1.01818 1.02215 1.20476 0.95963 0.92662 1.03126 1.19641 1.03877 0.96028 0.92155 1.20779 0.99575 0.95111 0.96659 1.21093 1.01402 0.95044 0.98095 1.21076 0.99398 1.00028 0.91970 1.21426 0.99563 0.93092 0.99625 1.17322 0.99924 0.91511 0.83688 1.42632 1.35687 1.48187 1.06966 1.15952 0.82115 0.81889 0.80151 1.90933 1.34004 1.35019 1.83278 1.42270 1.45292 1.37030 1.06953 1.17018 0.92297 1.11570 0.83557 1.20772 0.92199 0.97703 0.97878 1.20154 1.00597 1.09285 0.89807 1.19440 0.90697 0.92639 0.87906 1.84010 1.40735 1.71966 1.11241 1.21300 1.04957 1.39013 0.81490 0.89109 1.25293 0.96343 0.96102 0.98855 1.70050 1.15765 1.36113 1.27696 0.85715 0.79194 0.78333 0.80181 1.19894 1.20275 1.19237 1.20961 0.95530 1.09129 0.98320 1.20451 0.98131 1.01284 0.91117 0.92236 0.92170 0.92925 0.90671 0.91192 0.86003 0.86195 0.85839 0.83851 0.76069 0.76724 0.85137 0.86114 0.92009 0.85082 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.82 37.16 0.37 -0.46 16 2 C -0.08 -0.59 5.47 -27.88 -0.15 -0.74 16 3 C -0.11 -1.08 5.15 -104.44 -0.54 -1.62 16 4 C -0.10 -0.90 9.68 -39.61 -0.38 -1.28 16 5 C -0.14 -1.26 10.04 -39.55 -0.40 -1.65 16 6 C -0.11 -1.14 10.04 -39.61 -0.40 -1.53 16 7 C -0.12 -1.50 8.70 -39.39 -0.34 -1.85 16 8 C 0.17 1.98 6.29 -83.69 -0.53 1.46 16 9 N -0.69 -7.41 4.78 -14.22 -0.07 -7.48 16 10 C 0.70 10.06 8.25 -86.92 -0.72 9.34 16 11 O -0.56 -10.16 11.19 5.28 0.06 -10.10 16 12 N -0.67 -8.99 5.34 -14.18 -0.08 -9.07 16 13 C 0.05 0.85 6.30 -83.62 -0.53 0.32 16 14 C -0.07 -1.30 8.69 -39.42 -0.34 -1.64 16 15 C -0.18 -3.94 9.98 -39.42 -0.39 -4.34 16 16 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 17 O -0.18 -5.04 9.76 -0.02 0.00 -5.04 16 18 C -0.39 -10.87 9.44 30.88 0.29 -10.58 16 19 H 0.09 2.31 5.29 -52.49 -0.28 2.03 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 22 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.22 -4.68 9.13 -39.42 -0.36 -5.04 16 27 C -0.09 -1.58 9.96 -39.41 -0.39 -1.97 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.29 7.29 -51.93 -0.38 -0.08 16 31 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 32 H 0.07 0.49 7.44 -51.93 -0.39 0.11 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.14 2.15 6.20 -52.49 -0.33 1.83 16 37 H 0.40 3.04 7.08 -40.82 -0.29 2.75 16 38 H 0.40 3.77 8.85 -40.82 -0.36 3.41 16 39 H 0.13 2.57 6.22 -52.49 -0.33 2.24 16 40 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.13 2.76 5.70 -52.49 -0.30 2.46 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -33.30 361.68 -9.22 -42.52 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.16 Total: 10.22 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -5.17 Total: -17.31 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.61 Total: -41.10 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.06 Total: -15.15 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.30 -9.22 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328225391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.349 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds