Wall clock time and date at job start Tue Mar 31 2020 14:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.46896 * 2 1 4 4 C 1.38138 * 120.03367 * 265.29756 * 3 2 1 5 5 C 1.38264 * 120.06833 * 180.27735 * 4 3 2 6 6 C 1.38299 * 120.14121 * 359.72446 * 5 4 3 7 7 C 1.38094 * 120.07106 * 359.97438 * 6 5 4 8 8 C 1.38846 * 120.04077 * 85.00051 * 3 2 1 9 9 N 1.39933 * 120.06600 * 0.02562 * 8 3 2 10 10 C 1.34773 * 120.00454 * 145.01136 * 9 8 3 11 11 O 1.21600 * 120.00023 * 4.49962 * 10 9 8 12 12 N 1.34781 * 120.00369 * 184.50256 * 10 9 8 13 13 C 1.40012 * 119.99686 * 184.49637 * 12 10 9 14 14 C 1.38914 * 120.00703 * 324.86876 * 13 12 10 15 15 C 1.38003 * 119.99966 * 180.27337 * 14 13 12 16 16 C 1.38907 * 120.00191 * 359.50327 * 15 14 13 17 17 O 1.35782 * 119.99944 * 180.22777 * 16 15 14 18 18 C 1.34818 * 116.99829 * 185.93793 * 17 16 15 19 19 H 1.07993 * 120.00183 * 5.40311 * 18 17 16 20 20 C 1.38628 * 119.99665 * 185.39851 * 18 17 16 21 21 N 1.31574 * 120.00198 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99815 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47264 * 89.99572 * 22 20 18 24 24 H 1.48502 * 109.47149 * 210.00175 * 22 20 18 25 25 H 1.48502 * 109.47093 * 329.99882 * 22 20 18 26 26 C 1.38903 * 120.00050 * 0.49591 * 16 15 14 27 27 C 1.38011 * 120.00320 * 359.75534 * 26 16 15 28 28 H 1.08991 * 109.47100 * 60.00179 * 1 2 3 29 29 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46935 * 300.00106 * 1 2 3 31 31 H 1.09000 * 109.47183 * 239.99564 * 2 1 3 32 32 H 1.09000 * 109.47055 * 119.99612 * 2 1 3 33 33 H 1.08002 * 119.96962 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.92667 * 179.74499 * 5 4 3 35 35 H 1.08006 * 119.96342 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.03349 * 180.02562 * 7 6 5 37 37 H 0.97004 * 120.00188 * 325.00247 * 9 8 3 38 38 H 0.96997 * 119.99570 * 4.49973 * 12 10 9 39 39 H 1.07996 * 119.99857 * 0.02562 * 14 13 12 40 40 H 1.08000 * 120.00071 * 179.74816 * 15 14 13 41 41 H 0.97004 * 119.99571 * 180.02562 * 21 20 18 42 42 H 1.07997 * 119.99711 * 179.72532 * 26 16 15 43 43 H 1.07998 * 120.00321 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3552 2.0400 -1.1919 5 6 2.8215 3.3416 -1.1922 6 6 2.9608 4.0297 -0.0007 7 6 2.6339 3.4184 1.1937 8 6 2.1652 2.1110 1.1974 9 7 1.8336 1.4886 2.4060 10 6 2.5395 1.7623 3.5209 11 8 3.4109 2.6100 3.4961 12 7 2.2796 1.0964 4.6636 13 6 2.9466 1.4451 5.8442 14 6 4.2689 1.8682 5.7961 15 6 4.9279 2.2065 6.9604 16 6 4.2659 2.1340 8.1795 17 8 4.9129 2.4713 9.3245 18 6 4.2560 2.2622 10.4831 19 1 3.2977 1.7642 10.4782 20 6 4.8106 2.6865 11.6807 21 7 5.9779 3.2936 11.6866 22 14 3.9007 2.3962 13.2860 23 1 4.3017 1.0831 13.8519 24 1 4.2395 3.4746 14.2491 25 1 2.4373 2.4001 13.0333 26 6 2.9437 1.7110 8.2276 27 6 2.2861 1.3676 7.0639 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2471 1.5055 -2.1241 34 1 3.0772 3.8221 -2.1251 35 1 3.3250 5.0465 -0.0044 36 1 2.7425 3.9564 2.1238 37 1 1.0955 0.8601 2.4414 38 1 1.6306 0.3755 4.6679 39 1 4.7824 1.9284 4.8479 40 1 5.9572 2.5315 6.9235 41 1 6.3661 3.5901 12.5247 42 1 2.4304 1.6504 9.1759 43 1 1.2582 1.0384 7.1014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328225391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:14 Heat of formation + Delta-G solvation = -19.590285 kcal Electronic energy + Delta-G solvation = -26063.835287 eV Core-core repulsion = 22267.036974 eV Total energy + Delta-G solvation = -3796.798313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10657 -40.82091 -39.95375 -38.24575 -36.01440 -35.45588 -34.76532 -34.14122 -31.87489 -30.95847 -30.18596 -29.02588 -27.29437 -24.78569 -24.47939 -23.88740 -22.88081 -21.84149 -21.77821 -20.07371 -19.39825 -19.12210 -18.65508 -17.51911 -16.95490 -16.58610 -16.41564 -16.32952 -15.85974 -15.62571 -15.43443 -15.17578 -14.94220 -14.60728 -14.56407 -14.46057 -14.22147 -14.05922 -13.58118 -13.29220 -13.24034 -13.04991 -12.77252 -12.71132 -12.56336 -12.36088 -12.11302 -11.87466 -11.82354 -11.44210 -11.42420 -11.15933 -10.87992 -10.57154 -9.84721 -9.65750 -9.09574 -8.59440 -8.44858 -6.12227 0.34103 0.48316 0.52702 0.57305 1.37340 1.44555 1.48802 1.55290 1.96948 2.19686 2.82288 2.89389 3.07174 3.17452 3.51697 3.83554 3.94511 4.04714 4.14132 4.20727 4.33294 4.45219 4.49541 4.50768 4.57786 4.60808 4.64956 4.74054 4.80382 5.02437 5.08175 5.12358 5.17388 5.19689 5.28058 5.34887 5.41714 5.44599 5.50014 5.55002 5.63599 5.66466 5.70555 5.94304 6.03505 6.13626 6.17180 6.87959 6.99404 7.38547 7.80431 8.78602 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.002178 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.894689 B =12854.919255 C =13504.769173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.109 4.109 4 C -0.103 4.103 5 C -0.134 4.134 6 C -0.120 4.120 7 C -0.144 4.144 8 C 0.148 3.852 9 N -0.665 5.665 10 C 0.696 3.304 11 O -0.598 6.598 12 N -0.655 5.655 13 C 0.078 3.922 14 C -0.071 4.071 15 C -0.190 4.190 16 C 0.108 3.892 17 O -0.232 6.232 18 C -0.411 4.411 19 H 0.107 0.893 20 C -0.027 4.027 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.249 1.249 26 C -0.219 4.219 27 C -0.076 4.076 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.421 0.579 38 H 0.424 0.576 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.272 0.728 42 H 0.133 0.867 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.409 -8.441 -25.475 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.121 4.121 5 C -0.152 4.152 6 C -0.138 4.138 7 C -0.165 4.165 8 C 0.053 3.947 9 N -0.315 5.315 10 C 0.397 3.603 11 O -0.476 6.476 12 N -0.304 5.304 13 C -0.016 4.016 14 C -0.092 4.092 15 C -0.210 4.210 16 C 0.058 3.942 17 O -0.138 6.138 18 C -0.487 4.487 19 H 0.124 0.876 20 C -0.224 4.224 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.172 1.172 26 C -0.239 4.239 27 C -0.096 4.096 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.261 0.739 38 H 0.262 0.738 39 H 0.149 0.851 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.151 0.849 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.314 -7.549 -25.289 30.024 hybrid contribution -0.246 -0.114 1.139 1.171 sum -14.560 -7.662 -24.150 29.222 Atomic orbital electron populations 1.21773 0.93593 1.02799 1.02187 1.20551 0.96879 0.90832 1.03870 1.19962 1.02680 0.97179 0.91384 1.21209 0.98284 0.95037 0.97619 1.21433 1.00156 0.95301 0.98341 1.21252 0.99758 1.00724 0.92093 1.21337 1.01747 0.94177 0.99232 1.17492 1.01258 0.91449 0.84479 1.42322 1.35464 1.47904 1.05761 1.16098 0.81846 0.81433 0.80879 1.90934 1.35918 1.36749 1.83991 1.42022 1.45317 1.37707 1.05390 1.17089 0.91322 1.07943 0.85224 1.20844 0.93467 0.98014 0.96842 1.20248 1.00585 1.09876 0.90298 1.19878 0.92446 0.94474 0.87432 1.83974 1.42681 1.74711 1.12457 1.21865 1.05570 1.39381 0.81907 0.87552 1.26649 0.97239 0.95611 1.02872 1.70213 1.18240 1.38861 1.28810 0.84554 0.78485 0.78443 0.74517 1.18794 1.19977 1.17244 1.21122 0.94355 1.08511 0.99899 1.20809 0.99961 0.99469 0.89407 0.92213 0.90688 0.93081 0.89245 0.91203 0.83005 0.83582 0.85131 0.86971 0.73941 0.73751 0.85094 0.87161 0.91923 0.84896 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.82 71.98 0.71 -0.38 16 2 C -0.08 -0.86 5.47 29.85 0.16 -0.69 16 3 C -0.11 -1.77 5.15 -19.74 -0.10 -1.88 16 4 C -0.10 -1.47 9.68 22.25 0.22 -1.26 16 5 C -0.13 -2.13 10.04 22.29 0.22 -1.90 16 6 C -0.12 -2.51 10.04 22.25 0.22 -2.29 16 7 C -0.14 -3.76 8.70 22.39 0.19 -3.57 16 8 C 0.15 3.24 6.29 38.15 0.24 3.48 16 9 N -0.67 -13.01 4.78 -317.18 -1.52 -14.53 16 10 C 0.70 19.01 8.25 179.05 1.48 20.49 16 11 O -0.60 -21.95 11.19 -4.03 -0.05 -22.00 16 12 N -0.65 -15.66 5.34 -317.03 -1.69 -17.36 16 13 C 0.08 2.60 6.30 38.16 0.24 2.84 16 14 C -0.07 -2.85 8.69 22.38 0.19 -2.65 16 15 C -0.19 -8.82 9.98 22.37 0.22 -8.60 16 16 C 0.11 5.50 6.65 22.59 0.15 5.65 16 17 O -0.23 -14.11 9.76 -22.98 -0.22 -14.33 16 18 C -0.41 -23.78 9.44 67.91 0.64 -23.13 16 19 H 0.11 5.50 5.29 -2.91 -0.02 5.49 16 20 C -0.03 -1.51 5.49 84.82 0.47 -1.04 16 21 N -0.92 -57.29 13.67 21.61 0.30 -57.00 16 22 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 26 C -0.22 -9.23 9.13 22.38 0.20 -9.03 16 27 C -0.08 -2.48 9.96 22.38 0.22 -2.26 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.40 7.29 -2.38 -0.02 0.38 16 31 H 0.09 0.70 8.05 -2.39 -0.02 0.68 16 32 H 0.07 0.73 7.44 -2.39 -0.02 0.71 16 33 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.11 3.59 6.20 -2.91 -0.02 3.57 16 37 H 0.42 5.01 7.08 -92.71 -0.66 4.35 16 38 H 0.42 6.11 8.85 -92.71 -0.82 5.29 16 39 H 0.13 5.25 6.22 -2.91 -0.02 5.23 16 40 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.13 5.51 5.70 -2.91 -0.02 5.49 16 43 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -79.34 361.68 4.12 -75.22 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.40 Total: 31.67 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 5.69 Total: -26.24 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.91 Total: -88.88 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.27 Total: -36.33 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -79.34 4.12 -75.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328225391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.625 kcal (2) G-P(sol) polarization free energy of solvation -79.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds