Wall clock time and date at job start Tue Mar 31 2020 14:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.46862 * 2 1 4 4 N 1.31925 * 119.40412 * 270.29094 * 3 2 1 5 5 C 1.32205 * 121.79789 * 180.29334 * 4 3 2 6 6 O 1.35434 * 119.79695 * 179.68705 * 5 4 3 7 7 C 1.40325 * 120.39971 * 359.70199 * 5 4 3 8 8 C 1.47503 * 120.59937 * 180.02562 * 7 5 4 9 9 O 1.21603 * 119.99949 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00230 * 179.97438 * 8 7 5 11 11 C 1.39861 * 119.99759 * 175.09283 * 10 8 7 12 12 C 1.39307 * 119.95441 * 326.48044 * 11 10 8 13 13 C 1.38482 * 120.42479 * 179.72197 * 12 11 10 14 14 C 1.37689 * 120.32596 * 0.54802 * 13 12 11 15 15 C 1.40744 * 119.88869 * 359.72661 * 14 13 12 16 16 C 1.41405 * 120.21207 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00027 * 151.36459 * 16 15 14 18 18 C 1.39927 * 119.99915 * 331.37087 * 16 15 14 19 19 N 1.30831 * 119.99712 * 166.78228 * 18 16 15 20 20 Si 1.86801 * 120.00155 * 346.78469 * 18 16 15 21 21 H 1.48501 * 109.47229 * 95.30355 * 20 18 16 22 22 H 1.48498 * 109.46924 * 215.30381 * 20 18 16 23 23 H 1.48499 * 109.46829 * 335.30291 * 20 18 16 24 24 C 1.38267 * 119.94277 * 146.74724 * 11 10 8 25 25 C 1.39958 * 118.80481 * 0.02562 * 7 5 4 26 26 C 1.38315 * 119.41024 * 90.00041 * 3 2 1 27 27 C 1.50699 * 120.26606 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47264 * 60.00141 * 1 2 3 29 29 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46924 * 299.99710 * 1 2 3 31 31 H 1.08998 * 109.46829 * 239.99747 * 2 1 3 32 32 H 1.09005 * 109.47004 * 120.00098 * 2 1 3 33 33 H 0.96703 * 113.99415 * 270.01894 * 6 5 4 34 34 H 0.97001 * 119.99690 * 355.10341 * 10 8 7 35 35 H 1.07995 * 119.78259 * 359.97347 * 12 11 10 36 36 H 1.08001 * 119.83714 * 180.27929 * 13 12 11 37 37 H 1.07997 * 120.05448 * 179.74640 * 14 13 12 38 38 H 0.97007 * 119.99753 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.16108 * 359.97438 * 24 11 10 40 40 H 1.08005 * 120.82685 * 180.02562 * 25 7 5 41 41 H 1.09002 * 109.47324 * 269.72652 * 27 26 3 42 42 H 1.09001 * 109.47527 * 149.72215 * 27 26 3 43 43 H 1.09005 * 109.47055 * 29.71919 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2427 2.0334 -1.1493 5 6 2.6881 3.2769 -1.2045 6 8 2.8959 3.8646 -2.4069 7 6 2.9471 3.9915 -0.0250 8 6 3.4436 5.3793 -0.0815 9 8 3.6325 5.9141 -1.1571 10 7 3.6879 6.0546 1.0590 11 6 4.2549 7.3321 1.0075 12 6 5.1709 7.6466 0.0061 13 6 5.7340 8.9102 -0.0575 14 6 5.4027 9.8667 0.8758 15 6 4.4831 9.5617 1.8967 16 6 4.1376 10.5391 2.8584 17 1 3.1653 10.5147 3.3279 18 6 5.0555 11.5379 3.2018 19 7 4.6611 12.5820 3.8845 20 14 6.8437 11.3807 2.6853 21 1 7.0597 12.1220 1.4168 22 1 7.7165 11.9474 3.7447 23 1 7.1766 9.9475 2.4839 24 6 3.9096 8.2792 1.9538 25 6 2.7259 3.3636 1.2062 26 6 2.2587 2.0612 1.2049 27 6 2.0046 1.3440 2.5057 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7878 3.7370 -2.7581 34 1 3.4706 5.6546 1.9156 35 1 5.4405 6.9015 -0.7276 36 1 6.4397 9.1452 -0.8406 37 1 5.8476 10.8495 0.8244 38 1 5.2975 13.2742 4.1229 39 1 3.2026 8.0351 2.7328 40 1 2.9140 3.8832 2.1342 41 1 0.9759 1.5179 2.8216 42 1 2.6872 1.7203 3.2676 43 1 2.1666 0.2748 2.3688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362963766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:20 Heat of formation + Delta-G solvation = -23.424359 kcal Electronic energy + Delta-G solvation = -26487.461201 eV Core-core repulsion = 22690.496630 eV Total energy + Delta-G solvation = -3796.964571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20769 -39.56897 -37.79532 -37.25784 -34.65743 -34.24919 -33.64081 -33.17543 -31.02334 -30.29609 -28.63686 -27.09879 -25.42982 -25.12333 -23.25326 -22.45783 -21.41846 -21.15798 -19.79874 -18.83168 -18.04805 -17.29759 -17.07392 -16.04117 -15.91704 -15.36339 -15.22739 -14.79503 -14.64325 -14.33881 -14.26478 -14.04085 -13.65483 -13.48464 -13.24928 -12.95017 -12.69985 -12.69171 -12.58823 -12.28058 -12.05647 -11.78356 -11.71336 -11.66966 -11.27089 -11.08365 -10.77039 -10.65040 -10.26157 -10.07210 -9.95290 -9.68710 -9.49947 -9.38901 -8.97969 -8.90413 -7.71657 -7.17842 -6.94123 -4.52835 0.34786 0.80933 2.36785 2.60875 2.91350 3.11117 3.21568 3.23416 3.31819 3.38315 3.63359 3.97562 4.15764 4.28868 4.39230 4.50889 4.51826 4.77674 4.90071 4.91409 5.03915 5.17051 5.21048 5.34230 5.40169 5.45775 5.48934 5.60337 5.65070 5.83914 5.86795 6.00018 6.17784 6.29573 6.33804 6.47929 6.68557 6.74642 7.10290 7.27467 7.36958 7.43628 7.61814 7.63575 7.81894 7.85114 8.06850 8.31465 8.44510 8.61004 8.78415 10.08359 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.002639 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.349960 B =10608.803621 C =11340.372018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C 0.174 3.826 4 N -0.503 5.503 5 C 0.368 3.632 6 O -0.458 6.458 7 C -0.199 4.199 8 C 0.555 3.445 9 O -0.498 6.498 10 N -0.663 5.663 11 C 0.168 3.832 12 C -0.230 4.230 13 C -0.067 4.067 14 C -0.241 4.241 15 C 0.105 3.895 16 C -0.445 4.445 17 H 0.090 0.910 18 C 0.082 3.918 19 N -0.813 5.813 20 Si 0.915 3.085 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.240 1.240 24 C -0.231 4.231 25 C -0.029 4.029 26 C -0.154 4.154 27 C -0.111 4.111 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.405 0.595 34 H 0.399 0.601 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.285 0.715 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 -23.626 -1.874 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C 0.035 3.965 4 N -0.222 5.222 5 C 0.188 3.812 6 O -0.265 6.265 7 C -0.205 4.205 8 C 0.341 3.659 9 O -0.372 6.372 10 N -0.308 5.308 11 C 0.076 3.924 12 C -0.250 4.250 13 C -0.086 4.086 14 C -0.260 4.260 15 C 0.102 3.898 16 C -0.474 4.474 17 H 0.108 0.892 18 C -0.137 4.137 19 N -0.437 5.437 20 Si 0.743 3.257 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.164 1.164 24 C -0.253 4.253 25 C -0.055 4.055 26 C -0.156 4.156 27 C -0.168 4.168 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.264 0.736 34 H 0.235 0.765 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.162 0.838 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.552 -23.215 -3.289 23.714 hybrid contribution 1.200 0.459 0.911 1.575 sum -2.351 -22.756 -2.378 23.001 Atomic orbital electron populations 1.21700 0.93673 1.02313 1.02639 1.20647 0.96895 0.90286 1.04016 1.21072 0.92436 0.96217 0.86732 1.67123 1.15010 1.09903 1.30137 1.19102 0.90742 0.86182 0.85183 1.84736 1.37243 1.72849 1.31717 1.21190 1.08035 0.96966 0.94346 1.17806 0.78608 0.84807 0.84652 1.90840 1.49952 1.68241 1.28188 1.43370 1.61887 1.17050 1.08475 1.17469 0.94342 0.82872 0.97719 1.20317 1.03910 0.98050 1.02772 1.20473 0.97867 0.93069 0.97184 1.21003 1.07186 0.98855 0.98985 1.17483 0.89950 0.91080 0.91310 1.19454 1.02450 1.06292 1.19216 0.89195 1.26166 1.01998 0.92862 0.92628 1.69663 1.37580 1.06534 1.29969 0.86278 0.80955 0.81277 0.77216 1.19826 1.22242 1.16375 1.20683 1.08854 0.92911 1.02821 1.21659 0.92961 0.93685 0.97211 1.20608 1.03005 0.95056 0.96975 1.20821 1.02735 1.00323 0.92944 0.92109 0.91667 0.92384 0.89675 0.89373 0.73563 0.76524 0.87446 0.88380 0.88328 0.90453 0.87858 0.83840 0.90541 0.90955 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.55 5.80 -27.88 -0.16 -0.71 16 3 C 0.17 1.74 6.03 -82.53 -0.50 1.24 16 4 N -0.50 -6.45 10.28 -9.20 -0.09 -6.54 16 5 C 0.37 5.19 7.77 -16.61 -0.13 5.06 16 6 O -0.46 -6.61 11.66 -39.76 -0.46 -7.08 16 7 C -0.20 -2.72 5.90 -104.69 -0.62 -3.34 16 8 C 0.55 9.48 7.51 -12.48 -0.09 9.39 16 9 O -0.50 -10.16 12.86 -16.49 -0.21 -10.38 16 10 N -0.66 -11.16 5.28 -10.86 -0.06 -11.22 16 11 C 0.17 3.56 6.26 -83.79 -0.52 3.03 16 12 C -0.23 -5.08 8.66 -39.09 -0.34 -5.42 16 13 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 14 C -0.24 -5.88 6.91 -38.84 -0.27 -6.15 16 15 C 0.11 2.67 5.19 -106.85 -0.55 2.11 16 16 C -0.45 -11.97 9.61 -37.74 -0.36 -12.33 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.08 2.14 5.47 -17.35 -0.09 2.04 16 19 N -0.81 -21.66 13.93 55.55 0.77 -20.89 16 20 Si 0.92 20.80 24.37 -169.99 -4.14 16.65 16 21 H -0.27 -6.04 6.77 56.52 0.38 -5.66 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.24 -5.54 6.48 56.52 0.37 -5.17 16 24 C -0.23 -5.27 9.70 -38.68 -0.38 -5.64 16 25 C -0.03 -0.30 9.31 -38.89 -0.36 -0.66 16 26 C -0.15 -1.38 5.89 -104.54 -0.62 -1.99 16 27 C -0.11 -0.61 9.61 36.01 0.35 -0.26 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.40 5.90 -51.93 -0.31 0.09 16 33 H 0.40 4.14 9.06 45.56 0.41 4.55 16 34 H 0.40 5.21 6.93 -40.82 -0.28 4.93 16 35 H 0.11 2.31 6.40 -52.49 -0.34 1.98 16 36 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.10 2.39 4.20 -52.49 -0.22 2.17 16 38 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.14 1.13 6.53 -52.48 -0.34 0.79 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 43 H 0.08 0.31 5.91 -51.93 -0.31 0.00 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -32.87 354.47 -7.91 -40.78 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.37 Total: 9.41 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -4.68 Total: -16.09 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.62 Total: -38.64 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.68 Total: -17.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.87 -7.91 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362963766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.355 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds