Wall clock time and date at job start Tue Mar 31 2020 14:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.46862 * 2 1 4 4 N 1.31925 * 119.40412 * 270.29094 * 3 2 1 5 5 C 1.32205 * 121.79789 * 180.29334 * 4 3 2 6 6 O 1.35434 * 119.79695 * 179.68705 * 5 4 3 7 7 C 1.40325 * 120.39971 * 359.70199 * 5 4 3 8 8 C 1.47503 * 120.59937 * 180.02562 * 7 5 4 9 9 O 1.21603 * 119.99949 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00230 * 179.97438 * 8 7 5 11 11 C 1.39861 * 119.99759 * 175.09283 * 10 8 7 12 12 C 1.39307 * 119.95441 * 326.48044 * 11 10 8 13 13 C 1.38482 * 120.42479 * 179.72197 * 12 11 10 14 14 C 1.37689 * 120.32596 * 0.54802 * 13 12 11 15 15 C 1.40744 * 119.88869 * 359.72661 * 14 13 12 16 16 C 1.41405 * 120.21207 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00027 * 151.36459 * 16 15 14 18 18 C 1.39927 * 119.99915 * 331.37087 * 16 15 14 19 19 N 1.30831 * 119.99712 * 166.78228 * 18 16 15 20 20 Si 1.86801 * 120.00155 * 346.78469 * 18 16 15 21 21 H 1.48501 * 109.47229 * 95.30355 * 20 18 16 22 22 H 1.48498 * 109.46924 * 215.30381 * 20 18 16 23 23 H 1.48499 * 109.46829 * 335.30291 * 20 18 16 24 24 C 1.38267 * 119.94277 * 146.74724 * 11 10 8 25 25 C 1.39958 * 118.80481 * 0.02562 * 7 5 4 26 26 C 1.38315 * 119.41024 * 90.00041 * 3 2 1 27 27 C 1.50699 * 120.26606 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47264 * 60.00141 * 1 2 3 29 29 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46924 * 299.99710 * 1 2 3 31 31 H 1.08998 * 109.46829 * 239.99747 * 2 1 3 32 32 H 1.09005 * 109.47004 * 120.00098 * 2 1 3 33 33 H 0.96703 * 113.99415 * 270.01894 * 6 5 4 34 34 H 0.97001 * 119.99690 * 355.10341 * 10 8 7 35 35 H 1.07995 * 119.78259 * 359.97347 * 12 11 10 36 36 H 1.08001 * 119.83714 * 180.27929 * 13 12 11 37 37 H 1.07997 * 120.05448 * 179.74640 * 14 13 12 38 38 H 0.97007 * 119.99753 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.16108 * 359.97438 * 24 11 10 40 40 H 1.08005 * 120.82685 * 180.02562 * 25 7 5 41 41 H 1.09002 * 109.47324 * 269.72652 * 27 26 3 42 42 H 1.09001 * 109.47527 * 149.72215 * 27 26 3 43 43 H 1.09005 * 109.47055 * 29.71919 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2427 2.0334 -1.1493 5 6 2.6881 3.2769 -1.2045 6 8 2.8959 3.8646 -2.4069 7 6 2.9471 3.9915 -0.0250 8 6 3.4436 5.3793 -0.0815 9 8 3.6325 5.9141 -1.1571 10 7 3.6879 6.0546 1.0590 11 6 4.2549 7.3321 1.0075 12 6 5.1709 7.6466 0.0061 13 6 5.7340 8.9102 -0.0575 14 6 5.4027 9.8667 0.8758 15 6 4.4831 9.5617 1.8967 16 6 4.1376 10.5391 2.8584 17 1 3.1653 10.5147 3.3279 18 6 5.0555 11.5379 3.2018 19 7 4.6611 12.5820 3.8845 20 14 6.8437 11.3807 2.6853 21 1 7.0597 12.1220 1.4168 22 1 7.7165 11.9474 3.7447 23 1 7.1766 9.9475 2.4839 24 6 3.9096 8.2792 1.9538 25 6 2.7259 3.3636 1.2062 26 6 2.2587 2.0612 1.2049 27 6 2.0046 1.3440 2.5057 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7878 3.7370 -2.7581 34 1 3.4706 5.6546 1.9156 35 1 5.4405 6.9015 -0.7276 36 1 6.4397 9.1452 -0.8406 37 1 5.8476 10.8495 0.8244 38 1 5.2975 13.2742 4.1229 39 1 3.2026 8.0351 2.7328 40 1 2.9140 3.8832 2.1342 41 1 0.9759 1.5179 2.8216 42 1 2.6872 1.7203 3.2676 43 1 2.1666 0.2748 2.3688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362963766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:19 Heat of formation + Delta-G solvation = -46.797555 kcal Electronic energy + Delta-G solvation = -26488.474739 eV Core-core repulsion = 22690.496630 eV Total energy + Delta-G solvation = -3797.978109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21151 -40.91917 -39.21864 -38.49422 -36.18599 -35.34614 -34.82180 -34.36495 -32.26450 -31.82236 -30.19020 -27.74924 -27.08676 -26.22831 -24.42978 -23.23211 -22.91215 -22.67450 -21.24914 -19.87527 -19.60197 -18.56217 -18.18803 -17.81452 -17.04327 -16.79717 -16.44056 -16.10230 -15.84335 -15.72214 -15.34119 -15.02289 -14.74953 -14.52653 -14.48075 -14.18478 -13.94801 -13.89924 -13.52680 -13.48008 -13.16476 -12.94968 -12.90512 -12.65862 -12.61418 -12.47702 -12.25541 -11.95910 -11.76203 -11.56410 -11.29051 -11.21133 -10.95226 -10.80931 -10.45091 -9.74020 -9.58409 -8.90162 -8.88665 -6.54263 -0.60188 -0.01993 0.67698 0.76592 1.28416 1.42193 1.50719 1.72759 1.95027 2.13359 2.38879 2.58144 2.67666 3.32294 3.47632 3.52856 3.58814 3.76206 4.03446 4.21918 4.27814 4.34993 4.41530 4.47812 4.53475 4.56882 4.68005 4.73696 4.81561 4.89739 4.93123 4.97135 5.02629 5.08743 5.17065 5.25694 5.31039 5.32728 5.53186 5.56950 5.66008 5.77998 5.90439 6.16579 6.31603 6.46073 6.51957 6.67584 6.76927 6.79874 7.09168 8.18891 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.002639 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.349960 B =10608.803621 C =11340.372018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C 0.170 3.830 4 N -0.523 5.523 5 C 0.350 3.650 6 O -0.480 6.480 7 C -0.217 4.217 8 C 0.558 3.442 9 O -0.537 6.537 10 N -0.654 5.654 11 C 0.175 3.825 12 C -0.228 4.228 13 C -0.070 4.070 14 C -0.257 4.257 15 C 0.088 3.912 16 C -0.477 4.477 17 H 0.060 0.940 18 C 0.045 3.955 19 N -0.851 5.851 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.245 1.245 24 C -0.237 4.237 25 C -0.025 4.025 26 C -0.144 4.144 27 C -0.112 4.112 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.416 0.584 34 H 0.419 0.581 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.294 0.706 39 H 0.116 0.884 40 H 0.169 0.831 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -26.852 -1.210 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C 0.032 3.968 4 N -0.242 5.242 5 C 0.171 3.829 6 O -0.289 6.289 7 C -0.224 4.224 8 C 0.346 3.654 9 O -0.414 6.414 10 N -0.300 5.300 11 C 0.082 3.918 12 C -0.249 4.249 13 C -0.088 4.088 14 C -0.276 4.276 15 C 0.084 3.916 16 C -0.506 4.506 17 H 0.078 0.922 18 C -0.169 4.169 19 N -0.478 5.478 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.169 1.169 24 C -0.258 4.258 25 C -0.051 4.051 26 C -0.146 4.146 27 C -0.168 4.168 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.277 0.723 34 H 0.257 0.743 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.187 0.813 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.103 -26.476 -2.601 26.784 hybrid contribution 0.931 1.176 0.628 1.626 sum -2.172 -25.300 -1.973 25.469 Atomic orbital electron populations 1.21697 0.93169 1.03459 1.01793 1.20812 0.97138 0.88311 1.05460 1.21795 0.91050 0.97507 0.86461 1.67182 1.15759 1.09501 1.31793 1.19260 0.91707 0.86901 0.85060 1.84682 1.38423 1.73383 1.32414 1.20898 1.10536 0.95217 0.95784 1.18285 0.77446 0.85829 0.83804 1.90810 1.51669 1.69402 1.29527 1.43251 1.61483 1.15540 1.09770 1.17483 0.93492 0.84297 0.96540 1.20606 1.03397 0.98168 1.02733 1.20803 0.98049 0.92712 0.97262 1.21099 1.07597 0.99461 0.99462 1.17650 0.90855 0.91720 0.91325 1.19438 1.01978 1.08314 1.20903 0.92207 1.26831 1.05219 0.92335 0.92494 1.69691 1.39050 1.07445 1.31588 0.85458 0.76824 0.80909 0.77532 1.18904 1.20809 1.16893 1.20839 1.08811 0.92535 1.03649 1.21983 0.92020 0.94333 0.96758 1.21019 1.00907 0.94411 0.98249 1.20969 1.03807 1.01092 0.90971 0.94450 0.89567 0.91735 0.89949 0.86248 0.72289 0.74258 0.86687 0.85503 0.88378 0.89576 0.86644 0.81318 0.89257 0.89656 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 71.98 0.71 -0.69 16 2 C -0.08 -0.83 5.80 29.85 0.17 -0.65 16 3 C 0.17 3.00 6.03 42.56 0.26 3.25 16 4 N -0.52 -12.95 10.28 -296.06 -3.04 -15.99 16 5 C 0.35 9.79 7.77 85.14 0.66 10.45 16 6 O -0.48 -14.21 11.66 -66.49 -0.78 -14.98 16 7 C -0.22 -5.73 5.90 -19.91 -0.12 -5.85 16 8 C 0.56 18.59 7.51 86.69 0.65 19.24 16 9 O -0.54 -21.89 12.86 16.77 0.22 -21.67 16 10 N -0.65 -21.00 5.28 -306.52 -1.62 -22.62 16 11 C 0.18 7.24 6.26 38.12 0.24 7.48 16 12 C -0.23 -9.79 8.66 22.59 0.20 -9.60 16 13 C -0.07 -3.03 10.02 22.20 0.22 -2.81 16 14 C -0.26 -12.42 6.91 22.75 0.16 -12.26 16 15 C 0.09 4.49 5.19 -21.31 -0.11 4.38 16 16 C -0.48 -26.55 9.61 23.46 0.23 -26.32 16 17 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 18 C 0.05 2.43 5.47 85.25 0.47 2.90 16 19 N -0.85 -46.61 13.93 21.82 0.30 -46.30 16 20 Si 0.97 42.85 24.37 68.60 1.67 44.52 16 21 H -0.26 -11.17 6.77 99.48 0.67 -10.50 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.25 -10.94 6.48 99.48 0.64 -10.30 16 24 C -0.24 -10.74 9.70 22.86 0.22 -10.52 16 25 C -0.03 -0.46 9.31 22.72 0.21 -0.25 16 26 C -0.14 -2.08 5.89 -19.81 -0.12 -2.20 16 27 C -0.11 -0.68 9.61 71.24 0.68 0.00 16 28 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 0.50 5.90 -2.38 -0.01 0.49 16 33 H 0.42 8.95 9.06 -74.06 -0.67 8.28 16 34 H 0.42 9.96 6.93 -92.71 -0.64 9.31 16 35 H 0.12 4.80 6.40 -2.91 -0.02 4.78 16 36 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.10 4.70 4.20 -2.91 -0.01 4.68 16 38 H 0.29 14.46 8.30 -92.70 -0.77 13.69 16 39 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.17 2.04 6.53 -2.91 -0.02 2.02 16 41 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 42 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 43 H 0.10 0.24 5.91 -2.38 -0.01 0.23 16 Total: -1.00 -73.72 354.47 1.16 -72.55 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.32 Total: 27.95 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.73 Total: -23.44 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -4.36 Total: -84.92 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.56 Total: -36.66 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.67 Total: 44.52 kcal Total: -73.72 1.16 -72.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362963766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.754 kcal (2) G-P(sol) polarization free energy of solvation -73.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds