Wall clock time and date at job start Tue Mar 31 2020 14:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36355 * 120.37950 * 2 1 4 4 C 1.40496 * 119.39910 * 179.78533 * 3 2 1 5 5 O 1.22102 * 119.92121 * 180.25037 * 4 3 2 6 6 N 1.34634 * 120.15330 * 0.48914 * 4 3 2 7 7 C 1.46504 * 119.60549 * 179.77303 * 6 4 3 8 8 C 1.35945 * 120.78412 * 359.76277 * 6 4 3 9 9 C 1.35880 * 120.59443 * 359.97438 * 8 6 4 10 10 N 1.40392 * 120.08515 * 180.02562 * 9 8 6 11 11 C 1.34776 * 119.99974 * 118.75735 * 10 9 8 12 12 O 1.21300 * 120.00021 * 4.03054 * 11 10 9 13 13 C 1.50697 * 119.99664 * 184.03869 * 11 10 9 14 14 H 1.08991 * 109.47222 * 305.39246 * 13 11 10 15 15 C 1.50696 * 109.47264 * 65.39663 * 13 11 10 16 16 H 1.08003 * 120.00394 * 64.83345 * 15 13 11 17 17 C 1.37878 * 120.00072 * 244.83008 * 15 13 11 18 18 N 1.31513 * 120.00320 * 184.54539 * 17 15 13 19 19 Si 1.86795 * 119.99635 * 4.55034 * 17 15 13 20 20 H 1.48503 * 109.47336 * 94.04279 * 19 17 15 21 21 H 1.48507 * 109.46950 * 214.03947 * 19 17 15 22 22 H 1.48498 * 109.47263 * 334.03940 * 19 17 15 23 23 C 1.50707 * 109.47040 * 185.39389 * 13 11 10 24 24 C 1.38238 * 120.00009 * 294.45978 * 23 13 11 25 25 C 1.38232 * 120.00229 * 179.78803 * 24 23 13 26 26 C 1.38241 * 119.99512 * 0.43519 * 25 24 23 27 27 C 1.38229 * 120.00135 * 359.81403 * 26 25 24 28 28 C 1.38233 * 119.99867 * 114.72802 * 23 13 11 29 29 H 1.09001 * 109.46835 * 269.71788 * 1 2 3 30 30 H 1.09004 * 109.46775 * 149.72816 * 1 2 3 31 31 H 1.08988 * 109.47391 * 29.72295 * 1 2 3 32 32 H 1.08004 * 120.29866 * 0.02562 * 3 2 1 33 33 H 1.08991 * 109.47663 * 269.98253 * 7 6 4 34 34 H 1.09003 * 109.47184 * 29.98915 * 7 6 4 35 35 H 1.09007 * 109.46675 * 149.98102 * 7 6 4 36 36 H 1.07998 * 119.69929 * 180.02562 * 8 6 4 37 37 H 0.96998 * 119.99718 * 298.75162 * 10 9 8 38 38 H 0.96996 * 120.00245 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00119 * 359.97438 * 24 23 13 40 40 H 1.07991 * 120.00603 * 180.26966 * 25 24 23 41 41 H 1.07998 * 119.99724 * 179.83686 * 26 25 24 42 42 H 1.08000 * 119.99998 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00329 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1763 0.0000 4 6 3.6013 1.1523 0.0046 5 8 4.2284 2.2000 0.0093 6 7 4.2576 -0.0232 -0.0010 7 6 5.7226 -0.0343 -0.0012 8 6 3.5770 -1.2000 -0.0063 9 6 2.2183 -1.2132 -0.0055 10 7 1.5263 -2.4347 -0.0104 11 6 0.7062 -2.7487 1.0119 12 8 0.5091 -1.9461 1.8999 13 6 0.0342 -4.0970 1.0520 14 1 -0.5133 -4.2578 0.1234 15 6 1.0767 -5.1732 1.2134 16 1 1.6667 -5.2225 2.1167 17 6 1.2773 -6.0950 0.2079 18 7 2.1227 -7.0869 0.3841 19 14 0.3483 -5.9350 -1.4047 20 1 1.1785 -5.1863 -2.3822 21 1 0.0512 -7.2876 -1.9412 22 1 -0.9235 -5.2041 -1.1730 23 6 -0.9233 -4.1467 2.2147 24 6 -0.4425 -4.0830 3.5092 25 6 -1.3210 -4.1242 4.5757 26 6 -2.6797 -4.2382 4.3478 27 6 -3.1601 -4.3071 3.0535 28 6 -2.2818 -4.2616 1.9869 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8876 -0.5181 31 1 -0.3633 0.8923 -0.5095 32 1 1.6677 2.1180 0.0004 33 1 6.0859 -0.0325 -1.0287 34 1 6.0927 0.8506 0.5166 35 1 6.0792 -0.9293 0.5088 36 1 4.1212 -2.1329 -0.0103 37 1 1.6384 -3.0525 -0.7497 38 1 2.2641 -7.7352 -0.3234 39 1 0.6193 -3.9980 3.6874 40 1 -0.9458 -4.0701 5.5869 41 1 -3.3659 -4.2730 5.1810 42 1 -4.2215 -4.3965 2.8754 43 1 -2.6572 -4.3153 0.9756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411984768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:11 Heat of formation + Delta-G solvation = -7.511526 kcal Electronic energy + Delta-G solvation = -27695.624241 eV Core-core repulsion = 23899.349703 eV Total energy + Delta-G solvation = -3796.274539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32014 -39.57175 -38.23396 -36.73919 -35.36206 -33.86877 -33.37695 -31.65709 -30.21127 -29.88888 -28.76214 -27.59129 -26.12926 -24.00213 -23.27305 -21.96168 -21.81964 -20.84154 -19.51441 -17.89712 -17.56484 -17.25553 -16.43544 -16.29066 -16.04259 -15.82709 -14.97863 -14.70672 -14.42222 -14.08247 -14.00181 -13.77071 -13.42029 -13.21826 -13.04562 -12.96073 -12.82205 -12.70044 -12.46219 -12.35663 -12.04844 -11.98303 -11.68740 -11.40871 -11.25255 -11.19894 -10.53172 -10.27430 -10.02527 -9.87742 -9.64771 -9.62819 -9.16464 -9.05757 -8.86190 -8.21143 -7.92221 -7.61428 -6.45402 -4.48879 0.91048 1.89686 2.07714 2.13546 2.63635 2.93642 3.01775 3.09436 3.42456 3.67271 3.82302 4.02013 4.52686 4.66399 4.76157 4.88342 4.89711 5.08021 5.16802 5.34226 5.48039 5.50388 5.52457 5.57783 5.65766 5.81918 5.83900 5.89745 5.98328 6.03489 6.12369 6.22129 6.27032 6.32876 6.41669 6.54667 6.65060 6.77921 7.03287 7.09504 7.13624 7.17205 7.21710 7.48658 7.70651 7.95853 8.11830 8.12377 8.58180 8.94860 9.10520 10.65763 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.004619 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.753937 B = 6060.634983 C = 7352.099038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.037 3.963 3 C -0.253 4.253 4 C 0.514 3.486 5 O -0.567 6.567 6 N -0.495 5.495 7 C 0.062 3.938 8 C 0.114 3.886 9 C 0.054 3.946 10 N -0.673 5.673 11 C 0.529 3.471 12 O -0.543 6.543 13 C 0.019 3.981 14 H 0.078 0.922 15 C -0.507 4.507 16 H 0.085 0.915 17 C 0.082 3.918 18 N -0.877 5.877 19 Si 0.857 3.143 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.255 1.255 23 C -0.022 4.022 24 C -0.075 4.075 25 C -0.128 4.128 26 C -0.141 4.141 27 C -0.128 4.128 28 C -0.131 4.131 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.168 0.832 37 H 0.407 0.593 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 7.083 -2.604 7.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.032 3.968 3 C -0.275 4.275 4 C 0.318 3.682 5 O -0.451 6.451 6 N -0.206 5.206 7 C -0.079 4.079 8 C -0.015 4.015 9 C -0.044 4.044 10 N -0.323 5.323 11 C 0.319 3.681 12 O -0.419 6.419 13 C -0.002 4.002 14 H 0.096 0.904 15 C -0.544 4.544 16 H 0.103 0.897 17 C -0.123 4.123 18 N -0.512 5.512 19 Si 0.683 3.317 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.180 1.180 23 C -0.023 4.023 24 C -0.093 4.093 25 C -0.147 4.147 26 C -0.160 4.160 27 C -0.147 4.147 28 C -0.149 4.149 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.186 0.814 37 H 0.244 0.756 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.124 8.091 -2.028 8.416 hybrid contribution -0.235 -0.709 -1.223 1.433 sum -1.359 7.382 -3.251 8.180 Atomic orbital electron populations 1.20960 0.90082 1.02408 1.04233 1.20370 0.97303 0.91622 0.87507 1.21758 0.92308 0.99022 1.14441 1.17063 0.89256 0.82538 0.79384 1.90923 1.69485 1.30120 1.54603 1.45201 1.09027 1.06379 1.60017 1.22124 0.77226 1.04914 1.03669 1.21975 0.92831 0.89982 0.96708 1.16661 0.89194 0.87139 1.11362 1.43356 1.46635 1.17245 1.25054 1.21989 0.77453 0.89017 0.79594 1.90602 1.62868 1.51193 1.37231 1.18646 0.94876 0.91017 0.95692 0.90424 1.20617 1.18335 1.09990 1.05470 0.89740 1.25082 0.94590 0.94509 0.98126 1.69853 1.34583 1.13167 1.33633 0.87154 0.81365 0.78974 0.84171 1.19438 1.20359 1.17996 1.19748 0.92823 0.94735 0.95004 1.20872 0.99491 0.97060 0.91914 1.21033 0.93534 1.01597 0.98499 1.20885 0.95390 1.03302 0.96376 1.20893 0.98679 1.02148 0.92939 1.20963 0.93104 1.02491 0.98381 0.88565 0.91223 0.91487 0.83416 0.90786 0.88868 0.89623 0.81439 0.75621 0.91941 0.86559 0.87144 0.87311 0.87187 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.46 36.00 0.30 -1.40 16 2 C 0.04 0.57 5.51 -104.40 -0.58 -0.01 16 3 C -0.25 -3.86 9.64 -39.41 -0.38 -4.24 16 4 C 0.51 8.38 7.40 -15.47 -0.11 8.27 16 5 O -0.57 -10.68 16.63 4.83 0.08 -10.60 16 6 N -0.49 -6.76 2.99 -127.00 -0.38 -7.14 16 7 C 0.06 0.63 10.36 59.85 0.62 1.25 16 8 C 0.11 1.54 10.20 -16.57 -0.17 1.37 16 9 C 0.05 0.84 5.67 -83.88 -0.48 0.37 16 10 N -0.67 -11.31 4.69 -10.01 -0.05 -11.35 16 11 C 0.53 10.33 5.85 -10.99 -0.06 10.27 16 12 O -0.54 -11.52 12.85 5.54 0.07 -11.45 16 13 C 0.02 0.40 2.22 -94.08 -0.21 0.19 16 14 H 0.08 1.55 4.03 -51.93 -0.21 1.34 16 15 C -0.51 -12.02 8.35 -34.44 -0.29 -12.31 16 16 H 0.08 2.26 7.55 -52.48 -0.40 1.87 16 17 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.88 -23.05 13.96 55.43 0.77 -22.28 16 19 Si 0.86 17.28 27.32 -169.99 -4.64 12.64 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.25 -4.83 5.81 56.52 0.33 -4.50 16 23 C -0.02 -0.46 4.36 -104.62 -0.46 -0.91 16 24 C -0.08 -1.52 8.13 -39.58 -0.32 -1.85 16 25 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 26 C -0.14 -2.29 10.05 -39.58 -0.40 -2.68 16 27 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 28 C -0.13 -2.41 9.67 -39.58 -0.38 -2.79 16 29 H 0.10 1.52 7.02 -51.93 -0.36 1.16 16 30 H 0.07 1.00 7.10 -51.93 -0.37 0.63 16 31 H 0.07 0.77 8.09 -51.94 -0.42 0.35 16 32 H 0.15 2.04 8.06 -52.48 -0.42 1.61 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.01 7.38 -51.93 -0.38 0.63 16 35 H 0.09 0.66 8.02 -51.93 -0.42 0.25 16 36 H 0.17 1.91 8.04 -52.49 -0.42 1.49 16 37 H 0.41 6.44 8.47 -40.82 -0.35 6.10 16 38 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.12 2.47 7.56 -52.49 -0.40 2.07 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.84 7.95 -52.49 -0.42 1.43 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -30.34 359.78 -7.99 -38.32 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.46 Total: 14.21 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -3.80 Total: -7.76 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.35 Total: -40.77 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.15 Total: -22.06 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -4.64 Total: 12.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.34 -7.99 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411984768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.812 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds