Wall clock time and date at job start Tue Mar 31 2020 14:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36355 * 120.37950 * 2 1 4 4 C 1.40496 * 119.39910 * 179.78533 * 3 2 1 5 5 O 1.22102 * 119.92121 * 180.25037 * 4 3 2 6 6 N 1.34634 * 120.15330 * 0.48914 * 4 3 2 7 7 C 1.46504 * 119.60549 * 179.77303 * 6 4 3 8 8 C 1.35945 * 120.78412 * 359.76277 * 6 4 3 9 9 C 1.35880 * 120.59443 * 359.97438 * 8 6 4 10 10 N 1.40392 * 120.08515 * 180.02562 * 9 8 6 11 11 C 1.34776 * 119.99974 * 118.75735 * 10 9 8 12 12 O 1.21300 * 120.00021 * 4.03054 * 11 10 9 13 13 C 1.50697 * 119.99664 * 184.03869 * 11 10 9 14 14 H 1.08991 * 109.47222 * 305.39246 * 13 11 10 15 15 C 1.50696 * 109.47264 * 65.39663 * 13 11 10 16 16 H 1.08003 * 120.00394 * 64.83345 * 15 13 11 17 17 C 1.37878 * 120.00072 * 244.83008 * 15 13 11 18 18 N 1.31513 * 120.00320 * 184.54539 * 17 15 13 19 19 Si 1.86795 * 119.99635 * 4.55034 * 17 15 13 20 20 H 1.48503 * 109.47336 * 94.04279 * 19 17 15 21 21 H 1.48507 * 109.46950 * 214.03947 * 19 17 15 22 22 H 1.48498 * 109.47263 * 334.03940 * 19 17 15 23 23 C 1.50707 * 109.47040 * 185.39389 * 13 11 10 24 24 C 1.38238 * 120.00009 * 294.45978 * 23 13 11 25 25 C 1.38232 * 120.00229 * 179.78803 * 24 23 13 26 26 C 1.38241 * 119.99512 * 0.43519 * 25 24 23 27 27 C 1.38229 * 120.00135 * 359.81403 * 26 25 24 28 28 C 1.38233 * 119.99867 * 114.72802 * 23 13 11 29 29 H 1.09001 * 109.46835 * 269.71788 * 1 2 3 30 30 H 1.09004 * 109.46775 * 149.72816 * 1 2 3 31 31 H 1.08988 * 109.47391 * 29.72295 * 1 2 3 32 32 H 1.08004 * 120.29866 * 0.02562 * 3 2 1 33 33 H 1.08991 * 109.47663 * 269.98253 * 7 6 4 34 34 H 1.09003 * 109.47184 * 29.98915 * 7 6 4 35 35 H 1.09007 * 109.46675 * 149.98102 * 7 6 4 36 36 H 1.07998 * 119.69929 * 180.02562 * 8 6 4 37 37 H 0.96998 * 119.99718 * 298.75162 * 10 9 8 38 38 H 0.96996 * 120.00245 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00119 * 359.97438 * 24 23 13 40 40 H 1.07991 * 120.00603 * 180.26966 * 25 24 23 41 41 H 1.07998 * 119.99724 * 179.83686 * 26 25 24 42 42 H 1.08000 * 119.99998 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00329 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1763 0.0000 4 6 3.6013 1.1523 0.0046 5 8 4.2284 2.2000 0.0093 6 7 4.2576 -0.0232 -0.0010 7 6 5.7226 -0.0343 -0.0012 8 6 3.5770 -1.2000 -0.0063 9 6 2.2183 -1.2132 -0.0055 10 7 1.5263 -2.4347 -0.0104 11 6 0.7062 -2.7487 1.0119 12 8 0.5091 -1.9461 1.8999 13 6 0.0342 -4.0970 1.0520 14 1 -0.5133 -4.2578 0.1234 15 6 1.0767 -5.1732 1.2134 16 1 1.6667 -5.2225 2.1167 17 6 1.2773 -6.0950 0.2079 18 7 2.1227 -7.0869 0.3841 19 14 0.3483 -5.9350 -1.4047 20 1 1.1785 -5.1863 -2.3822 21 1 0.0512 -7.2876 -1.9412 22 1 -0.9235 -5.2041 -1.1730 23 6 -0.9233 -4.1467 2.2147 24 6 -0.4425 -4.0830 3.5092 25 6 -1.3210 -4.1242 4.5757 26 6 -2.6797 -4.2382 4.3478 27 6 -3.1601 -4.3071 3.0535 28 6 -2.2818 -4.2616 1.9869 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8876 -0.5181 31 1 -0.3633 0.8923 -0.5095 32 1 1.6677 2.1180 0.0004 33 1 6.0859 -0.0325 -1.0287 34 1 6.0927 0.8506 0.5166 35 1 6.0792 -0.9293 0.5088 36 1 4.1212 -2.1329 -0.0103 37 1 1.6384 -3.0525 -0.7497 38 1 2.2641 -7.7352 -0.3234 39 1 0.6193 -3.9980 3.6874 40 1 -0.9458 -4.0701 5.5869 41 1 -3.3659 -4.2730 5.1810 42 1 -4.2215 -4.3965 2.8754 43 1 -2.6572 -4.3153 0.9756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411984768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:10 Heat of formation + Delta-G solvation = -25.028709 kcal Electronic energy + Delta-G solvation = -27696.383843 eV Core-core repulsion = 23899.349703 eV Total energy + Delta-G solvation = -3797.034141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52937 -41.02842 -39.60183 -38.07930 -36.56059 -35.53948 -34.76499 -33.31908 -31.59142 -30.98627 -30.06894 -29.05218 -27.15204 -25.62195 -24.57302 -23.35350 -23.12470 -22.14466 -20.97929 -19.31479 -19.00863 -18.64904 -17.86725 -17.63294 -17.35176 -17.00779 -16.31911 -16.17194 -15.84490 -15.47568 -15.29256 -15.11946 -14.73881 -14.56625 -14.48428 -14.18407 -14.09557 -14.03486 -13.82284 -13.43532 -13.35596 -13.31378 -12.83490 -12.81412 -12.78408 -12.44936 -11.94340 -11.90026 -11.58600 -11.33972 -11.16089 -10.85769 -10.79510 -10.56412 -10.39177 -9.60383 -9.35148 -8.85549 -8.30844 -6.40250 -0.24440 0.62351 0.69316 0.74396 1.35843 1.41116 1.48143 1.52500 1.91606 2.31599 2.39354 2.55745 3.00237 3.20619 3.58224 3.68423 3.78220 4.01568 4.12866 4.22912 4.26541 4.36605 4.40153 4.42937 4.44145 4.52539 4.59046 4.71741 4.73097 4.80477 4.84284 4.87212 4.92671 5.09737 5.22777 5.25497 5.36054 5.39659 5.43487 5.73373 5.75624 5.78574 5.96196 5.97816 6.23658 6.34443 6.58109 6.64229 6.89055 7.23464 7.45580 8.83870 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.004619 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.753937 B = 6060.634983 C = 7352.099038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.036 3.964 3 C -0.262 4.262 4 C 0.503 3.497 5 O -0.600 6.600 6 N -0.489 5.489 7 C 0.055 3.945 8 C 0.133 3.867 9 C 0.026 3.974 10 N -0.662 5.662 11 C 0.532 3.468 12 O -0.563 6.563 13 C 0.023 3.977 14 H 0.089 0.911 15 C -0.502 4.502 16 H 0.035 0.965 17 C 0.035 3.965 18 N -0.929 5.929 19 Si 0.913 3.087 20 H -0.241 1.241 21 H -0.288 1.288 22 H -0.232 1.232 23 C -0.052 4.052 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.137 4.137 27 C -0.124 4.124 28 C -0.143 4.143 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.193 0.807 37 H 0.413 0.587 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.129 0.871 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 7.475 -3.720 8.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.031 3.969 3 C -0.284 4.284 4 C 0.308 3.692 5 O -0.488 6.488 6 N -0.199 5.199 7 C -0.085 4.085 8 C 0.004 3.996 9 C -0.071 4.071 10 N -0.311 5.311 11 C 0.322 3.678 12 O -0.441 6.441 13 C 0.002 3.998 14 H 0.106 0.894 15 C -0.539 4.539 16 H 0.054 0.946 17 C -0.165 4.165 18 N -0.567 5.567 19 Si 0.736 3.264 20 H -0.164 1.164 21 H -0.214 1.214 22 H -0.156 1.156 23 C -0.053 4.053 24 C -0.122 4.122 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.141 4.141 28 C -0.161 4.161 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.175 0.825 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.210 0.790 37 H 0.250 0.750 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.147 0.853 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.930 8.500 -3.155 9.528 hybrid contribution 0.372 -0.855 -0.732 1.186 sum -2.558 7.645 -3.887 8.950 Atomic orbital electron populations 1.20926 0.89358 1.03647 1.03305 1.20477 0.97934 0.91452 0.87069 1.21840 0.92107 0.99519 1.14929 1.17269 0.89707 0.82800 0.79426 1.90901 1.70135 1.31254 1.56463 1.45322 1.10556 1.05694 1.58329 1.22429 0.74916 1.05883 1.05322 1.22259 0.92478 0.90708 0.94204 1.16833 0.90045 0.86685 1.13520 1.43117 1.45938 1.17725 1.24358 1.21656 0.77787 0.88461 0.79894 1.90590 1.63689 1.51665 1.38121 1.18563 0.94260 0.90506 0.96516 0.89393 1.20511 1.18561 1.11208 1.03643 0.94641 1.25836 0.95285 0.93677 1.01738 1.70006 1.36985 1.14578 1.35096 0.86245 0.81368 0.78973 0.79852 1.16437 1.21445 1.15647 1.19865 0.94058 0.96616 0.94739 1.20822 0.98642 0.99491 0.93286 1.21316 0.94317 1.01087 0.98667 1.21335 0.95038 1.01325 0.97762 1.21355 1.00333 1.00093 0.92346 1.21251 0.92374 1.02388 1.00119 0.90434 0.91439 0.88828 0.82461 0.88782 0.89745 0.86884 0.78973 0.74978 0.91948 0.89485 0.85300 0.83591 0.83414 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 8.46 71.24 0.60 -2.56 16 2 C 0.04 1.07 5.51 -19.72 -0.11 0.96 16 3 C -0.26 -7.82 9.64 22.38 0.22 -7.60 16 4 C 0.50 16.12 7.40 84.81 0.63 16.75 16 5 O -0.60 -22.58 16.63 -5.65 -0.09 -22.67 16 6 N -0.49 -12.70 2.99 -673.85 -2.01 -14.72 16 7 C 0.05 1.00 10.36 127.77 1.32 2.33 16 8 C 0.13 3.41 10.20 83.51 0.85 4.26 16 9 C 0.03 0.79 5.67 37.81 0.21 1.00 16 10 N -0.66 -21.73 4.69 -303.96 -1.43 -23.16 16 11 C 0.53 20.87 5.85 87.66 0.51 21.38 16 12 O -0.56 -24.33 12.85 -3.09 -0.04 -24.36 16 13 C 0.02 0.95 2.22 -13.03 -0.03 0.92 16 14 H 0.09 3.39 4.03 -2.39 -0.01 3.38 16 15 C -0.50 -24.65 8.35 25.60 0.21 -24.44 16 16 H 0.04 2.04 7.55 -2.91 -0.02 2.02 16 17 C 0.04 1.72 5.47 84.66 0.46 2.18 16 18 N -0.93 -50.37 13.96 21.45 0.30 -50.07 16 19 Si 0.91 34.54 27.32 68.60 1.87 36.42 16 20 H -0.24 -8.00 7.11 99.48 0.71 -7.29 16 21 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.23 -7.89 5.81 99.48 0.58 -7.31 16 23 C -0.05 -2.14 4.36 -19.86 -0.09 -2.22 16 24 C -0.10 -4.35 8.13 22.27 0.18 -4.17 16 25 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 26 C -0.14 -4.02 10.05 22.27 0.22 -3.80 16 27 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 28 C -0.14 -5.00 9.67 22.27 0.22 -4.78 16 29 H 0.08 2.44 7.02 -2.39 -0.02 2.42 16 30 H 0.07 1.84 7.10 -2.38 -0.02 1.82 16 31 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 32 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.75 7.38 -2.39 -0.02 1.73 16 35 H 0.11 1.45 8.02 -2.38 -0.02 1.44 16 36 H 0.19 3.94 8.04 -2.91 -0.02 3.91 16 37 H 0.41 12.45 8.47 -92.71 -0.78 11.66 16 38 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.09 4.02 7.56 -2.91 -0.02 3.99 16 40 H 0.13 3.82 8.06 -2.92 -0.02 3.79 16 41 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 43 H 0.13 3.90 7.95 -2.91 -0.02 3.87 16 Total: -1.00 -69.23 359.78 4.60 -64.63 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: 0.13 Total: 41.62 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.87 Total: -7.69 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -3.14 Total: -87.95 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.13 Total: -47.04 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 1.87 Total: 36.42 kcal Total: -69.23 4.60 -64.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411984768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.599 kcal (2) G-P(sol) polarization free energy of solvation -69.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds