Wall clock time and date at job start Tue Mar 31 2020 14:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46691 * 2 1 4 4 N 1.31920 * 119.40023 * 270.27167 * 3 2 1 5 5 C 1.32207 * 121.79433 * 180.31194 * 4 3 2 6 6 O 1.35433 * 119.79583 * 179.68027 * 5 4 3 7 7 C 1.40339 * 120.39979 * 359.70912 * 5 4 3 8 8 C 1.47473 * 120.60166 * 180.02562 * 7 5 4 9 9 O 1.21594 * 120.00280 * 359.96842 * 8 7 5 10 10 N 1.34782 * 120.00168 * 179.97438 * 8 7 5 11 11 C 1.39126 * 120.00183 * 176.67733 * 10 8 7 12 12 C 1.39513 * 119.83708 * 217.58474 * 11 10 8 13 13 C 1.36366 * 120.16696 * 179.71653 * 12 11 10 14 14 C 1.40876 * 119.82655 * 0.57174 * 13 12 11 15 15 C 1.41138 * 120.15941 * 179.67747 * 14 13 12 16 16 H 1.08000 * 120.00466 * 157.96711 * 15 14 13 17 17 C 1.39907 * 119.99763 * 337.97156 * 15 14 13 18 18 N 1.30871 * 120.00433 * 327.54932 * 17 15 14 19 19 Si 1.86807 * 120.00036 * 147.55027 * 17 15 14 20 20 H 1.48503 * 109.46935 * 94.98457 * 19 17 15 21 21 H 1.48500 * 109.47219 * 214.98689 * 19 17 15 22 22 H 1.48497 * 109.47063 * 334.98592 * 19 17 15 23 23 C 1.40878 * 119.68218 * 359.69739 * 14 13 12 24 24 C 1.36357 * 119.82953 * 0.02562 * 23 14 13 25 25 C 1.39971 * 118.79879 * 359.97438 * 7 5 4 26 26 C 1.38311 * 119.40428 * 89.99875 * 3 2 1 27 27 C 1.50700 * 120.26914 * 359.97438 * 26 3 2 28 28 H 1.09008 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47660 * 300.00034 * 1 2 3 30 30 H 1.09001 * 109.47686 * 60.00627 * 1 2 3 31 31 H 1.08999 * 109.47163 * 240.00040 * 2 1 3 32 32 H 1.08993 * 109.47305 * 119.99852 * 2 1 3 33 33 H 0.96699 * 113.99646 * 270.02309 * 6 5 4 34 34 H 0.96995 * 119.99665 * 356.67086 * 10 8 7 35 35 H 1.08001 * 119.91476 * 359.97438 * 12 11 10 36 36 H 1.08001 * 120.08091 * 180.24525 * 13 12 11 37 37 H 0.96994 * 120.00282 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.08639 * 179.97438 * 23 14 13 39 39 H 1.07999 * 119.91607 * 179.97438 * 24 23 14 40 40 H 1.08002 * 120.82834 * 180.02562 * 25 7 5 41 41 H 1.09000 * 109.47258 * 269.72217 * 27 26 3 42 42 H 1.09001 * 109.47482 * 149.72204 * 27 26 3 43 43 H 1.09006 * 109.47020 * 29.72056 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2429 2.0333 -1.1493 5 6 2.6886 3.2767 -1.2046 6 8 2.8969 3.8642 -2.4069 7 6 2.9478 3.9913 -0.0249 8 6 3.4446 5.3787 -0.0813 9 8 3.6338 5.9135 -1.1568 10 7 3.6890 6.0540 1.0593 11 6 4.2228 7.3377 1.0069 12 6 5.1591 7.7395 1.9600 13 6 5.6909 8.9943 1.9117 14 6 5.2836 9.8896 0.9031 15 6 5.8244 11.1921 0.8505 16 1 5.8069 11.7472 -0.0757 17 6 6.3833 11.7643 1.9984 18 7 5.8998 11.4698 3.1783 19 14 7.8199 12.9488 1.8470 20 1 7.3114 14.3439 1.8292 21 1 8.7334 12.7695 3.0040 22 1 8.5569 12.6745 0.5873 23 6 4.3335 9.4786 -0.0524 24 6 3.8147 8.2189 0.0052 25 6 2.7253 3.3638 1.2063 26 6 2.2585 2.0612 1.2049 27 6 2.0044 1.3439 2.5057 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7889 3.7363 -2.7579 34 1 3.4926 5.6450 1.9165 35 1 5.4665 7.0537 2.7356 36 1 6.4186 9.3025 2.6478 37 1 6.2875 11.8662 3.9741 38 1 4.0163 10.1598 -0.8282 39 1 3.0859 7.9025 -0.7264 40 1 2.9134 3.8832 2.1343 41 1 0.9757 1.5179 2.8216 42 1 2.6870 1.7203 3.2676 43 1 2.1665 0.2747 2.3688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001440644935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:23 Heat of formation + Delta-G solvation = -26.553782 kcal Electronic energy + Delta-G solvation = -26331.540319 eV Core-core repulsion = 22534.440046 eV Total energy + Delta-G solvation = -3797.100273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06902 -39.31413 -37.63977 -37.04312 -34.53285 -34.22599 -33.56681 -32.95672 -30.85137 -29.57968 -28.88627 -27.01579 -25.64265 -24.72475 -22.80605 -22.33524 -21.47975 -20.73279 -19.70295 -18.72169 -17.54273 -17.43596 -17.04377 -15.93159 -15.82702 -15.25037 -15.16351 -14.62681 -14.41023 -14.23726 -13.97876 -13.96032 -13.50212 -13.20110 -13.08185 -12.88269 -12.70026 -12.53261 -12.19941 -12.10109 -12.01231 -11.66154 -11.61171 -11.47552 -11.21549 -11.17665 -10.97227 -10.56537 -10.22593 -9.96146 -9.83577 -9.76610 -9.39437 -9.06012 -8.81423 -8.70938 -7.57945 -7.18013 -6.91778 -4.30095 0.47602 0.90709 2.58844 2.92691 3.03019 3.06248 3.09126 3.21193 3.37037 3.67168 3.78393 3.86748 4.24883 4.39863 4.46466 4.50761 4.61468 4.85729 4.96449 5.03546 5.13961 5.26153 5.27107 5.42994 5.52573 5.55962 5.64635 5.65824 5.73622 5.88998 5.96014 6.15043 6.27155 6.41310 6.73118 6.92336 6.96879 7.11068 7.25500 7.47720 7.53954 7.65287 7.74222 7.86016 7.99230 8.22224 8.23986 8.51621 8.71480 8.80797 8.96461 9.98433 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.029608 B = 0.002375 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.457043 B =11788.341805 C =12460.196349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C 0.170 3.830 4 N -0.503 5.503 5 C 0.365 3.635 6 O -0.458 6.458 7 C -0.192 4.192 8 C 0.543 3.457 9 O -0.511 6.511 10 N -0.641 5.641 11 C -0.024 4.024 12 C -0.100 4.100 13 C -0.172 4.172 14 C 0.113 3.887 15 C -0.463 4.463 16 H 0.083 0.917 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.896 3.104 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.063 4.063 25 C -0.033 4.033 26 C -0.155 4.155 27 C -0.110 4.110 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.404 0.596 34 H 0.391 0.609 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.284 0.716 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -20.189 1.883 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C 0.031 3.969 4 N -0.222 5.222 5 C 0.185 3.815 6 O -0.265 6.265 7 C -0.199 4.199 8 C 0.329 3.671 9 O -0.388 6.388 10 N -0.285 5.285 11 C -0.116 4.116 12 C -0.120 4.120 13 C -0.192 4.192 14 C 0.111 3.889 15 C -0.491 4.491 16 H 0.101 0.899 17 C -0.134 4.134 18 N -0.391 5.391 19 Si 0.720 3.280 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.083 4.083 25 C -0.059 4.059 26 C -0.157 4.157 27 C -0.167 4.167 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.264 0.736 34 H 0.225 0.775 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.160 0.840 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.215 -19.944 0.583 20.898 hybrid contribution 1.179 0.799 1.197 1.860 sum -5.036 -19.146 1.780 19.877 Atomic orbital electron populations 1.21698 0.93779 1.02218 1.02599 1.20627 0.96816 0.90400 1.03915 1.21024 0.92926 0.96185 0.86769 1.67102 1.15010 1.09979 1.30128 1.19118 0.90976 0.86185 0.85263 1.84723 1.37215 1.72892 1.31716 1.21296 1.07085 0.97406 0.94137 1.17780 0.79765 0.84551 0.84986 1.90804 1.51160 1.68535 1.28292 1.42797 1.62465 1.15643 1.07566 1.17009 1.05951 0.84280 1.04376 1.20158 0.96815 0.96959 0.98105 1.20613 1.03711 0.92585 1.02252 1.17605 0.88432 0.92824 0.90087 1.19525 1.33431 0.99668 0.96452 0.89932 1.25957 0.96411 0.96498 0.94552 1.69942 1.33713 1.35845 0.99576 0.86501 0.81635 0.80275 0.79637 1.19424 1.19868 1.18055 1.20605 1.03316 0.96260 1.04183 1.20322 0.98587 0.92629 0.96738 1.21645 0.93301 0.93645 0.97267 1.20587 1.03152 0.95096 0.96881 1.20808 1.02603 1.00289 0.93031 0.91747 0.92425 0.92137 0.89750 0.89469 0.73603 0.77503 0.89305 0.87444 0.90558 0.88657 0.87868 0.83992 0.90662 0.91063 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.08 -0.59 5.81 -27.88 -0.16 -0.75 16 3 C 0.17 1.82 6.03 -82.52 -0.50 1.33 16 4 N -0.50 -6.87 10.28 -9.20 -0.09 -6.97 16 5 C 0.36 5.51 7.77 -16.60 -0.13 5.38 16 6 O -0.46 -7.11 11.66 -39.75 -0.46 -7.57 16 7 C -0.19 -2.85 5.90 -104.70 -0.62 -3.47 16 8 C 0.54 9.99 7.58 -12.50 -0.09 9.89 16 9 O -0.51 -11.20 12.81 -16.48 -0.21 -11.41 16 10 N -0.64 -11.55 5.24 -10.70 -0.06 -11.61 16 11 C -0.02 -0.54 6.25 -83.60 -0.52 -1.06 16 12 C -0.10 -2.27 9.90 -39.78 -0.39 -2.67 16 13 C -0.17 -4.36 8.74 -39.26 -0.34 -4.70 16 14 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 15 C -0.46 -12.18 8.94 -37.86 -0.34 -12.51 16 16 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 17 C 0.09 2.15 4.77 -17.34 -0.08 2.07 16 18 N -0.77 -19.19 11.78 55.55 0.65 -18.53 16 19 Si 0.90 18.05 29.66 -169.99 -5.04 13.01 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.22 -5.73 9.74 -39.26 -0.38 -6.11 16 24 C -0.06 -1.53 8.59 -39.78 -0.34 -1.88 16 25 C -0.03 -0.37 9.31 -38.88 -0.36 -0.73 16 26 C -0.16 -1.50 5.89 -104.55 -0.62 -2.11 16 27 C -0.11 -0.67 9.61 36.01 0.35 -0.32 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.45 5.90 -51.93 -0.31 0.14 16 33 H 0.40 4.64 9.06 45.56 0.41 5.06 16 34 H 0.39 5.54 6.93 -40.82 -0.28 5.25 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.11 2.75 6.53 -52.49 -0.34 2.41 16 37 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.10 2.51 6.45 -52.49 -0.34 2.18 16 40 H 0.14 1.25 6.52 -52.49 -0.34 0.91 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 43 H 0.07 0.34 5.91 -51.93 -0.31 0.04 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -32.22 361.58 -8.97 -41.19 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -4.44 Total: 12.27 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -4.77 Total: -15.84 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.50 Total: -37.11 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.67 Total: -18.98 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.04 Total: 13.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.22 -8.97 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440644935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.640 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds