Wall clock time and date at job start Tue Mar 31 2020 15:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 N 1.46498 * 109.47524 * 180.02562 * 3 2 1 5 5 C 1.35931 * 119.60581 * 270.27521 * 4 3 2 6 6 C 1.35945 * 120.59488 * 180.23467 * 5 4 3 7 7 N 1.40239 * 120.09440 * 179.76090 * 6 5 4 8 8 C 1.34772 * 120.00067 * 238.02555 * 7 6 5 9 9 O 1.21641 * 120.00448 * 354.88012 * 8 7 6 10 10 C 1.47387 * 120.00164 * 174.88172 * 8 7 6 11 11 C 1.39253 * 120.28090 * 354.53177 * 10 8 7 12 12 C 1.38193 * 120.08988 * 180.25029 * 11 10 8 13 13 C 1.38853 * 120.67910 * 359.45063 * 12 11 10 14 14 C 1.37571 * 120.57185 * 0.55013 * 13 12 11 15 15 C 1.40718 * 119.88935 * 359.73092 * 14 13 12 16 16 C 1.40859 * 120.33427 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00309 * 146.05894 * 16 15 14 18 18 C 1.40274 * 119.99965 * 326.05543 * 16 15 14 19 19 N 1.30631 * 119.99987 * 350.68963 * 18 16 15 20 20 Si 1.86800 * 120.00329 * 170.68970 * 18 16 15 21 21 H 1.48495 * 109.46846 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47494 * 119.99876 * 20 18 16 23 23 H 1.48501 * 109.47088 * 239.99933 * 20 18 16 24 24 C 1.40659 * 119.81069 * 359.48888 * 6 5 4 25 25 C 1.36335 * 119.24521 * 0.24873 * 24 6 5 26 26 C 1.34631 * 119.60773 * 89.99032 * 4 3 2 27 27 O 1.22097 * 119.91925 * 0.02562 * 26 4 3 28 28 H 1.09002 * 109.47542 * 300.00630 * 1 2 3 29 29 H 1.09008 * 109.47285 * 60.00185 * 1 2 3 30 30 H 1.09002 * 109.47780 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46816 * 239.99525 * 2 1 3 32 32 H 1.09000 * 109.46694 * 119.99909 * 2 1 3 33 33 H 1.09002 * 109.47304 * 59.99223 * 3 2 1 34 34 H 1.09008 * 109.46766 * 300.00132 * 3 2 1 35 35 H 1.08003 * 119.70484 * 359.97438 * 5 4 3 36 36 H 0.96997 * 119.99479 * 58.02549 * 7 6 5 37 37 H 1.08002 * 119.95711 * 359.97438 * 11 10 8 38 38 H 1.08005 * 119.66083 * 179.72351 * 12 11 10 39 39 H 1.08002 * 119.71144 * 180.27869 * 13 12 11 40 40 H 1.08003 * 120.05960 * 179.74721 * 14 13 12 41 41 H 0.97001 * 120.00430 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.38017 * 180.27454 * 24 6 5 43 43 H 1.08000 * 120.30766 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1770 1.4366 1.1809 6 6 5.5363 1.4413 1.2038 7 7 6.2189 1.4403 2.4289 8 6 7.0834 2.4326 2.7195 9 8 7.3421 3.2780 1.8840 10 6 7.7152 2.4936 4.0496 11 6 7.3393 1.5978 5.0473 12 6 7.9306 1.6619 6.2947 13 6 8.9106 2.6072 6.5664 14 6 9.3031 3.5056 5.6012 15 6 8.7127 3.4656 4.3245 16 6 9.1078 4.3806 3.3291 17 1 9.1234 4.0776 2.2926 18 6 9.4810 5.6854 3.6840 19 7 9.2909 6.1099 4.9047 20 14 10.2497 6.8160 2.4112 21 1 10.3565 6.1009 1.1141 22 1 9.4003 8.0224 2.2433 23 1 11.6039 7.2233 2.8644 24 6 6.2560 1.4415 -0.0046 25 6 5.5748 1.4420 -1.1856 26 6 4.1697 1.4425 -1.1714 27 8 3.5500 1.4429 -2.2235 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.6262 1.4324 2.1099 36 1 6.0689 0.7254 3.0670 37 1 6.5813 0.8549 4.8474 38 1 7.6305 0.9666 7.0648 39 1 9.3656 2.6404 7.5454 40 1 10.0633 4.2401 5.8229 41 1 9.5486 7.0122 5.1502 42 1 7.3360 1.4407 0.0028 43 1 6.1101 1.4417 -2.1236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464279701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:14 Heat of formation + Delta-G solvation = -18.030587 kcal Electronic energy + Delta-G solvation = -26777.986840 eV Core-core repulsion = 22981.256160 eV Total energy + Delta-G solvation = -3796.730679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35826 -39.24755 -37.30850 -36.54860 -35.72615 -34.04164 -33.49592 -32.51772 -30.21625 -29.78438 -28.46718 -26.91038 -25.51733 -23.86662 -23.25308 -22.26321 -21.53127 -20.89675 -19.62034 -18.13688 -17.45099 -17.30403 -16.53403 -16.34325 -15.59062 -15.41470 -15.26440 -15.10824 -14.35770 -14.20695 -14.02860 -13.78665 -13.56612 -13.26928 -12.95794 -12.78788 -12.55352 -12.46126 -12.26013 -12.15817 -11.94669 -11.65833 -11.40815 -11.19241 -11.10332 -11.04702 -10.76430 -10.60948 -10.17626 -10.05037 -9.86209 -9.76747 -9.36078 -9.03448 -8.61996 -7.73820 -7.58828 -7.43651 -6.88957 -4.48628 0.89838 1.88728 2.24833 2.57524 2.72776 3.06983 3.15521 3.16960 3.65795 3.78138 3.91910 4.02406 4.50007 4.54392 4.58783 4.64130 4.87347 4.97480 5.09772 5.11918 5.30764 5.34848 5.42240 5.53116 5.68049 5.75773 5.86056 5.87928 5.89880 6.03128 6.11325 6.20245 6.28429 6.45827 6.52322 6.85702 7.00454 7.04738 7.10519 7.22224 7.36345 7.51942 7.77487 7.87423 8.07240 8.09548 8.16309 8.56427 8.72409 8.79277 9.21371 10.05788 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.003320 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.962325 B = 8432.475696 C = 9735.722764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.093 3.907 4 N -0.489 5.489 5 C 0.099 3.901 6 C 0.065 3.935 7 N -0.691 5.691 8 C 0.566 3.434 9 O -0.522 6.522 10 C -0.265 4.265 11 C -0.056 4.056 12 C -0.244 4.244 13 C -0.095 4.095 14 C -0.146 4.146 15 C 0.146 3.854 16 C -0.413 4.413 17 H 0.107 0.893 18 C 0.069 3.931 19 N -0.789 5.789 20 Si 0.916 3.084 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.004 3.996 25 C -0.242 4.242 26 C 0.513 3.487 27 O -0.564 6.564 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.161 0.839 36 H 0.401 0.599 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.283 0.717 42 H 0.138 0.862 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -9.360 -2.790 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.029 4.029 4 N -0.201 5.201 5 C -0.030 4.030 6 C -0.033 4.033 7 N -0.343 5.343 8 C 0.361 3.639 9 O -0.398 6.398 10 C -0.270 4.270 11 C -0.075 4.075 12 C -0.264 4.264 13 C -0.114 4.114 14 C -0.165 4.165 15 C 0.142 3.858 16 C -0.441 4.441 17 H 0.124 0.876 18 C -0.150 4.150 19 N -0.414 5.414 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.019 4.019 25 C -0.264 4.264 26 C 0.316 3.684 27 O -0.448 6.448 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.178 0.822 36 H 0.238 0.762 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.094 0.906 42 H 0.156 0.844 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.326 -8.479 -3.890 13.916 hybrid contribution 0.238 0.269 0.229 0.425 sum -10.088 -8.210 -3.661 13.512 Atomic orbital electron populations 1.21682 0.94463 1.02266 1.02209 1.21864 0.96784 0.95887 1.03121 1.22035 0.77232 0.98703 1.04926 1.45291 1.08589 1.59905 1.06282 1.21802 0.92772 0.98634 0.89776 1.16748 0.89193 1.09779 0.87562 1.43512 1.45872 1.28365 1.16555 1.18591 0.77396 0.79512 0.88373 1.90723 1.61150 1.38451 1.49500 1.19295 1.06567 1.08089 0.93023 1.20632 0.97162 0.96162 0.93514 1.20290 1.05000 1.04264 0.96832 1.20819 0.97162 0.95758 0.97661 1.21372 1.01854 0.99178 0.94073 1.17469 0.86896 0.89264 0.92210 1.20236 1.32772 0.94295 0.96786 0.87563 1.26143 0.93140 0.99640 0.96032 1.69714 1.34248 1.18315 1.19095 0.86110 0.78783 0.79504 0.81587 1.17933 1.19833 1.19811 1.21664 1.01481 0.87759 0.90974 1.21981 0.92538 1.12191 0.99673 1.17126 0.89274 0.79379 0.82666 1.90926 1.69939 1.54268 1.29660 0.92387 0.92245 0.92147 0.91008 0.91450 0.89223 0.88168 0.82159 0.76189 0.89197 0.89032 0.89018 0.86406 0.90620 0.84385 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.14 -1.17 6.26 -26.73 -0.17 -1.33 16 3 C 0.09 0.91 5.33 -4.05 -0.02 0.89 16 4 N -0.49 -6.21 2.59 -119.56 -0.31 -6.52 16 5 C 0.10 1.20 10.20 -16.56 -0.17 1.03 16 6 C 0.07 0.96 5.76 -83.92 -0.48 0.47 16 7 N -0.69 -10.85 5.22 -11.00 -0.06 -10.91 16 8 C 0.57 11.92 7.58 -12.54 -0.10 11.83 16 9 O -0.52 -12.74 12.72 5.24 0.07 -12.67 16 10 C -0.26 -5.96 5.92 -104.37 -0.62 -6.58 16 11 C -0.06 -1.08 9.50 -39.22 -0.37 -1.46 16 12 C -0.24 -4.82 10.03 -39.37 -0.39 -5.22 16 13 C -0.10 -2.02 10.01 -39.60 -0.40 -2.42 16 14 C -0.15 -3.51 8.62 -38.89 -0.34 -3.85 16 15 C 0.15 3.70 5.51 -106.54 -0.59 3.11 16 16 C -0.41 -10.82 7.69 -37.83 -0.29 -11.11 16 17 H 0.11 2.88 5.90 -52.49 -0.31 2.57 16 18 C 0.07 1.72 5.25 -17.30 -0.09 1.63 16 19 N -0.79 -19.73 11.13 55.56 0.62 -19.12 16 20 Si 0.92 19.10 29.57 -169.99 -5.03 14.08 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 24 C 0.00 0.07 8.93 -39.35 -0.35 -0.29 16 25 C -0.24 -3.60 9.98 -39.41 -0.39 -4.00 16 26 C 0.51 8.03 7.40 -15.46 -0.11 7.91 16 27 O -0.56 -10.28 16.63 4.83 0.08 -10.20 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.67 8.02 -51.93 -0.42 0.25 16 34 H 0.10 1.10 7.38 -51.92 -0.38 0.71 16 35 H 0.16 1.45 8.04 -52.48 -0.42 1.03 16 36 H 0.40 5.12 6.93 -40.82 -0.28 4.84 16 37 H 0.09 1.37 6.47 -52.49 -0.34 1.03 16 38 H 0.09 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.92 6.58 -52.48 -0.35 2.58 16 41 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 42 H 0.14 2.14 7.95 -52.48 -0.42 1.73 16 43 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -31.03 363.52 -9.10 -40.13 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.43 Total: 9.74 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -4.51 Total: -10.00 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.25 Total: -36.55 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.15 Total: -22.87 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.03 -9.10 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464279701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.098 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds