Wall clock time and date at job start Tue Mar 31 2020 15:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 N 1.46498 * 109.47524 * 180.02562 * 3 2 1 5 5 C 1.35931 * 119.60581 * 270.27521 * 4 3 2 6 6 C 1.35945 * 120.59488 * 180.23467 * 5 4 3 7 7 N 1.40239 * 120.09440 * 179.76090 * 6 5 4 8 8 C 1.34772 * 120.00067 * 238.02555 * 7 6 5 9 9 O 1.21641 * 120.00448 * 354.88012 * 8 7 6 10 10 C 1.47387 * 120.00164 * 174.88172 * 8 7 6 11 11 C 1.39253 * 120.28090 * 354.53177 * 10 8 7 12 12 C 1.38193 * 120.08988 * 180.25029 * 11 10 8 13 13 C 1.38853 * 120.67910 * 359.45063 * 12 11 10 14 14 C 1.37571 * 120.57185 * 0.55013 * 13 12 11 15 15 C 1.40718 * 119.88935 * 359.73092 * 14 13 12 16 16 C 1.40859 * 120.33427 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00309 * 146.05894 * 16 15 14 18 18 C 1.40274 * 119.99965 * 326.05543 * 16 15 14 19 19 N 1.30631 * 119.99987 * 350.68963 * 18 16 15 20 20 Si 1.86800 * 120.00329 * 170.68970 * 18 16 15 21 21 H 1.48495 * 109.46846 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47494 * 119.99876 * 20 18 16 23 23 H 1.48501 * 109.47088 * 239.99933 * 20 18 16 24 24 C 1.40659 * 119.81069 * 359.48888 * 6 5 4 25 25 C 1.36335 * 119.24521 * 0.24873 * 24 6 5 26 26 C 1.34631 * 119.60773 * 89.99032 * 4 3 2 27 27 O 1.22097 * 119.91925 * 0.02562 * 26 4 3 28 28 H 1.09002 * 109.47542 * 300.00630 * 1 2 3 29 29 H 1.09008 * 109.47285 * 60.00185 * 1 2 3 30 30 H 1.09002 * 109.47780 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46816 * 239.99525 * 2 1 3 32 32 H 1.09000 * 109.46694 * 119.99909 * 2 1 3 33 33 H 1.09002 * 109.47304 * 59.99223 * 3 2 1 34 34 H 1.09008 * 109.46766 * 300.00132 * 3 2 1 35 35 H 1.08003 * 119.70484 * 359.97438 * 5 4 3 36 36 H 0.96997 * 119.99479 * 58.02549 * 7 6 5 37 37 H 1.08002 * 119.95711 * 359.97438 * 11 10 8 38 38 H 1.08005 * 119.66083 * 179.72351 * 12 11 10 39 39 H 1.08002 * 119.71144 * 180.27869 * 13 12 11 40 40 H 1.08003 * 120.05960 * 179.74721 * 14 13 12 41 41 H 0.97001 * 120.00430 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.38017 * 180.27454 * 24 6 5 43 43 H 1.08000 * 120.30766 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1770 1.4366 1.1809 6 6 5.5363 1.4413 1.2038 7 7 6.2189 1.4403 2.4289 8 6 7.0834 2.4326 2.7195 9 8 7.3421 3.2780 1.8840 10 6 7.7152 2.4936 4.0496 11 6 7.3393 1.5978 5.0473 12 6 7.9306 1.6619 6.2947 13 6 8.9106 2.6072 6.5664 14 6 9.3031 3.5056 5.6012 15 6 8.7127 3.4656 4.3245 16 6 9.1078 4.3806 3.3291 17 1 9.1234 4.0776 2.2926 18 6 9.4810 5.6854 3.6840 19 7 9.2909 6.1099 4.9047 20 14 10.2497 6.8160 2.4112 21 1 10.3565 6.1009 1.1141 22 1 9.4003 8.0224 2.2433 23 1 11.6039 7.2233 2.8644 24 6 6.2560 1.4415 -0.0046 25 6 5.5748 1.4420 -1.1856 26 6 4.1697 1.4425 -1.1714 27 8 3.5500 1.4429 -2.2235 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.6262 1.4324 2.1099 36 1 6.0689 0.7254 3.0670 37 1 6.5813 0.8549 4.8474 38 1 7.6305 0.9666 7.0648 39 1 9.3656 2.6404 7.5454 40 1 10.0633 4.2401 5.8229 41 1 9.5486 7.0122 5.1502 42 1 7.3360 1.4407 0.0028 43 1 6.1101 1.4417 -2.1236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464279701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:13 Heat of formation + Delta-G solvation = -35.538781 kcal Electronic energy + Delta-G solvation = -26778.746052 eV Core-core repulsion = 22981.256160 eV Total energy + Delta-G solvation = -3797.489892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51040 -40.79559 -38.84817 -37.89667 -36.84619 -35.66080 -34.87825 -33.51303 -31.86324 -31.45331 -29.72207 -27.80874 -27.23914 -25.01522 -24.56178 -23.50703 -22.75222 -22.30186 -21.13072 -19.63018 -18.80315 -18.57225 -17.88702 -17.71006 -17.08861 -16.71729 -16.49320 -15.96139 -15.85437 -15.69734 -15.34216 -15.21170 -14.95243 -14.48700 -14.37094 -14.28809 -13.88606 -13.56904 -13.32936 -13.27297 -13.04498 -12.86709 -12.82276 -12.75581 -12.47214 -12.30403 -12.25534 -11.88371 -11.70346 -11.46019 -11.17080 -11.12779 -11.06304 -10.41459 -10.32194 -9.40182 -9.21472 -8.77631 -8.66154 -6.34428 -0.21328 0.48396 0.73619 1.04248 1.34601 1.48283 1.49823 1.51176 2.21031 2.31819 2.42343 2.61267 2.80911 3.62897 3.66278 3.76302 3.89942 3.91879 4.00004 4.14943 4.30520 4.38455 4.42256 4.52617 4.60068 4.64112 4.74491 4.83049 4.94500 5.00107 5.11498 5.12227 5.13881 5.18118 5.27139 5.32822 5.37021 5.43243 5.65582 5.79065 5.86009 5.98940 6.09541 6.15270 6.37338 6.64637 6.79033 6.90495 6.94140 7.01533 7.65066 8.30235 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.003320 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.962325 B = 8432.475696 C = 9735.722764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.085 3.915 4 N -0.482 5.482 5 C 0.136 3.864 6 C 0.031 3.969 7 N -0.664 5.664 8 C 0.565 3.435 9 O -0.563 6.563 10 C -0.276 4.276 11 C -0.049 4.049 12 C -0.236 4.236 13 C -0.092 4.092 14 C -0.178 4.178 15 C 0.116 3.884 16 C -0.454 4.454 17 H 0.084 0.916 18 C 0.034 3.966 19 N -0.821 5.821 20 Si 0.973 3.027 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.257 1.257 24 C 0.003 3.997 25 C -0.257 4.257 26 C 0.504 3.496 27 O -0.598 6.598 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.207 0.793 36 H 0.419 0.581 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.288 0.712 42 H 0.126 0.874 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -11.320 -0.736 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.035 4.035 4 N -0.191 5.191 5 C 0.007 3.993 6 C -0.066 4.066 7 N -0.316 5.316 8 C 0.360 3.640 9 O -0.442 6.442 10 C -0.281 4.281 11 C -0.067 4.067 12 C -0.255 4.255 13 C -0.111 4.111 14 C -0.198 4.198 15 C 0.112 3.888 16 C -0.483 4.483 17 H 0.101 0.899 18 C -0.181 4.181 19 N -0.448 5.448 20 Si 0.795 3.205 21 H -0.194 1.194 22 H -0.194 1.194 23 H -0.181 1.181 24 C -0.020 4.020 25 C -0.279 4.279 26 C 0.308 3.692 27 O -0.485 6.485 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.103 0.897 35 H 0.224 0.776 36 H 0.259 0.741 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.144 0.856 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.893 -10.490 -1.807 16.719 hybrid contribution 0.849 0.641 -0.323 1.112 sum -12.044 -9.850 -2.130 15.704 Atomic orbital electron populations 1.21669 0.92923 1.02941 1.02762 1.21820 0.98022 0.94556 1.02633 1.22374 0.75048 1.00067 1.05995 1.45435 1.10042 1.57930 1.05714 1.22276 0.91998 0.94232 0.90826 1.16797 0.90286 1.12884 0.86624 1.42972 1.44359 1.27215 1.17094 1.18524 0.77916 0.79966 0.87596 1.90713 1.62529 1.40497 1.50472 1.19673 1.05913 1.07849 0.94684 1.21112 0.97429 0.95841 0.92364 1.20824 1.03217 1.03555 0.97872 1.21193 0.97097 0.94853 0.97964 1.21288 1.02851 1.00678 0.94959 1.17841 0.87970 0.90238 0.92753 1.20160 1.36288 0.95841 0.96015 0.89855 1.26721 0.93365 1.00364 0.97691 1.69740 1.35949 1.18932 1.20170 0.85288 0.78783 0.77618 0.78833 1.19351 1.19440 1.18077 1.21629 1.01070 0.87666 0.91674 1.21981 0.92657 1.13355 0.99869 1.17219 0.89428 0.79407 0.83157 1.90903 1.70517 1.56090 1.30983 0.90671 0.92879 0.91457 0.93569 0.89845 0.85638 0.89665 0.77597 0.74053 0.84067 0.84887 0.86555 0.88492 0.90117 0.85626 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.85 6.26 30.59 0.19 -1.66 16 3 C 0.09 1.42 5.33 86.38 0.46 1.88 16 4 N -0.48 -11.09 2.59 -650.30 -1.68 -12.77 16 5 C 0.14 2.78 10.20 83.53 0.85 3.63 16 6 C 0.03 0.85 5.76 37.85 0.22 1.07 16 7 N -0.66 -19.07 5.22 -306.95 -1.60 -20.67 16 8 C 0.57 23.48 7.58 86.65 0.66 24.14 16 9 O -0.56 -28.30 12.72 -4.16 -0.05 -28.35 16 10 C -0.28 -12.18 5.92 -19.70 -0.12 -12.30 16 11 C -0.05 -1.70 9.50 22.50 0.21 -1.49 16 12 C -0.24 -8.27 10.03 22.41 0.22 -8.04 16 13 C -0.09 -3.76 10.01 22.26 0.22 -3.53 16 14 C -0.18 -8.77 8.62 22.72 0.20 -8.58 16 15 C 0.12 6.03 5.51 -21.11 -0.12 5.91 16 16 C -0.45 -25.13 7.69 23.41 0.18 -24.95 16 17 H 0.08 4.85 5.90 -2.91 -0.02 4.84 16 18 C 0.03 1.74 5.25 85.37 0.45 2.19 16 19 N -0.82 -42.91 11.13 21.88 0.24 -42.67 16 20 Si 0.97 41.15 29.57 68.60 2.03 43.18 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 24 C 0.00 0.09 8.93 22.42 0.20 0.29 16 25 C -0.26 -7.79 9.98 22.38 0.22 -7.57 16 26 C 0.50 15.60 7.40 84.82 0.63 16.22 16 27 O -0.60 -22.09 16.63 -5.63 -0.09 -22.19 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 1.24 8.02 -2.39 -0.02 1.22 16 34 H 0.08 1.74 7.38 -2.38 -0.02 1.72 16 35 H 0.21 2.37 8.04 -2.91 -0.02 2.34 16 36 H 0.42 8.77 6.93 -92.71 -0.64 8.13 16 37 H 0.14 3.39 6.47 -2.91 -0.02 3.37 16 38 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 40 H 0.10 5.06 6.58 -2.91 -0.02 5.04 16 41 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 42 H 0.13 4.09 7.95 -2.91 -0.02 4.07 16 43 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -73.38 363.52 4.64 -68.74 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.40 Total: 28.28 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 5.40 Total: -13.55 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -3.04 Total: -76.11 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -0.15 Total: -50.54 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -73.38 4.64 -68.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464279701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.204 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds