Wall clock time and date at job start Tue Mar 31 2020 15:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46910 * 2 1 4 4 C 1.46499 * 119.99506 * 269.99786 * 3 2 1 5 5 C 1.50697 * 109.47268 * 269.99939 * 4 3 2 6 6 H 1.08007 * 120.00099 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00337 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99463 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00285 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47060 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47221 * 120.00007 * 9 7 5 12 12 H 1.48503 * 109.47327 * 240.00031 * 9 7 5 13 13 C 1.34773 * 120.00211 * 89.99667 * 3 2 1 14 14 O 1.21591 * 120.00049 * 179.97438 * 13 3 2 15 15 N 1.34782 * 119.99901 * 0.02562 * 13 3 2 16 16 C 1.40265 * 120.00080 * 185.62408 * 15 13 3 17 17 C 1.38806 * 119.99982 * 24.77579 * 16 15 13 18 18 C 1.38485 * 119.95144 * 180.02562 * 17 16 15 19 19 O 1.36030 * 120.01617 * 180.02562 * 18 17 16 20 20 C 1.42900 * 117.00238 * 359.97438 * 19 18 17 21 21 C 1.39152 * 119.96763 * 359.97438 * 18 17 16 22 22 O 1.36057 * 119.99551 * 180.02562 * 21 18 17 23 23 C 1.42900 * 116.99936 * 179.97438 * 22 21 18 24 24 C 1.38547 * 120.00319 * 0.02562 * 21 18 17 25 25 C 1.38365 * 120.05055 * 0.02562 * 24 21 18 26 26 F 1.35099 * 119.98543 * 179.97438 * 25 24 21 27 27 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47230 * 300.00044 * 1 2 3 29 29 H 1.08999 * 109.46761 * 60.00464 * 1 2 3 30 30 H 1.09000 * 109.47230 * 239.99956 * 2 1 3 31 31 H 1.09004 * 109.47180 * 119.99672 * 2 1 3 32 32 H 1.08998 * 109.47391 * 30.00562 * 4 3 2 33 33 H 1.09004 * 109.46460 * 150.00406 * 4 3 2 34 34 H 0.97005 * 119.99547 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99960 * 5.62337 * 15 13 3 36 36 H 1.07992 * 120.02084 * 0.04384 * 17 16 15 37 37 H 1.08998 * 109.47537 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46740 * 299.99696 * 20 19 18 39 39 H 1.08992 * 109.47118 * 59.99671 * 20 19 18 40 40 H 1.08999 * 109.47074 * 59.99543 * 23 22 21 41 41 H 1.09000 * 109.47266 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47053 * 299.99821 * 23 22 21 43 43 H 1.08005 * 119.97352 * 180.27772 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3904 -2.8775 8 7 3.3496 3.1272 -3.6172 9 14 5.9138 2.0975 -3.4164 10 1 6.6011 1.2414 -2.4164 11 1 5.9218 1.4189 -4.7372 12 1 6.6210 3.3989 -3.5242 13 6 2.2429 2.0167 1.1671 14 8 2.6486 3.1629 1.1671 15 7 2.0187 1.3812 2.3344 16 6 2.1385 2.0773 3.5462 17 6 1.9742 3.4553 3.5742 18 6 2.0931 4.1416 4.7711 19 8 1.9318 5.4920 4.8001 20 6 1.6420 6.1376 3.5587 21 6 2.3767 3.4491 5.9443 22 8 2.4932 4.1228 7.1206 23 6 2.7848 3.3483 8.2856 24 6 2.5403 2.0736 5.9145 25 6 2.4226 1.3876 4.7187 26 9 2.5830 0.0464 4.6911 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6757 3.5176 -4.4431 35 1 1.7745 0.4424 2.3364 36 1 1.7534 3.9917 2.6633 37 1 1.5382 7.2102 3.7224 38 1 2.4547 5.9548 2.8556 39 1 0.7125 5.7404 3.1509 40 1 3.7342 2.8304 8.1493 41 1 2.8504 4.0062 9.1522 42 1 1.9917 2.6174 8.4439 43 1 2.7560 1.5360 6.8261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078575703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:57 Heat of formation + Delta-G solvation = -105.390576 kcal Electronic energy + Delta-G solvation = -28460.840887 eV Core-core repulsion = 24229.552770 eV Total energy + Delta-G solvation = -4231.288118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.83626 -40.75267 -39.74551 -38.42071 -36.94551 -35.41923 -34.07373 -32.70506 -30.26341 -30.01711 -29.50437 -27.46535 -27.18575 -26.45911 -23.37703 -23.13508 -22.47468 -21.88933 -19.53435 -18.88525 -18.08370 -17.52124 -16.89724 -16.48369 -16.44565 -16.20932 -15.73322 -15.40304 -15.23199 -14.97268 -14.75234 -14.54905 -14.43738 -14.16938 -13.71418 -13.26881 -13.18233 -12.80664 -12.66451 -12.42353 -12.16652 -12.05845 -11.79407 -11.70120 -11.41449 -11.31990 -11.24892 -11.07466 -10.94277 -10.81016 -10.59856 -10.16320 -9.77225 -9.62962 -9.35738 -8.47255 -8.46569 -7.84840 -7.38050 -6.08297 -4.12816 1.13311 1.25051 2.96129 3.19022 3.27965 3.29212 3.35881 3.39722 3.42762 3.86783 4.22282 4.25778 4.44346 4.62158 4.89291 5.00043 5.08267 5.08821 5.19420 5.26255 5.28406 5.31719 5.38995 5.49884 5.51899 5.61854 5.70198 5.73554 5.92214 5.94335 6.13783 6.18306 6.38846 6.41250 6.70458 6.89604 6.97653 7.27101 7.41684 7.51794 7.57548 7.89178 8.18108 8.45720 8.87297 9.10323 9.52727 10.99586 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003514 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.873297 B = 7966.158341 C = 8645.048042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.700 3.300 14 O -0.567 6.567 15 N -0.687 5.687 16 C 0.167 3.833 17 C -0.165 4.165 18 C 0.118 3.882 19 O -0.304 6.304 20 C 0.023 3.977 21 C 0.093 3.907 22 O -0.303 6.303 23 C 0.025 3.975 24 C -0.184 4.184 25 C 0.052 3.948 26 F -0.139 7.139 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.176 0.824 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 -3.151 18.883 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.402 3.598 14 O -0.444 6.444 15 N -0.336 5.336 16 C 0.068 3.932 17 C -0.186 4.186 18 C 0.071 3.929 19 O -0.217 6.217 20 C -0.072 4.072 21 C 0.047 3.953 22 O -0.216 6.216 23 C -0.070 4.070 24 C -0.204 4.204 25 C 0.029 3.971 26 F -0.118 7.118 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.193 0.807 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.118 -1.937 18.729 19.798 hybrid contribution 0.977 -1.319 -0.572 1.738 sum -5.141 -3.256 18.157 19.149 Atomic orbital electron populations 1.22241 0.96468 1.01628 1.02561 1.21413 0.93737 0.84173 1.02601 1.47657 1.66455 1.13420 1.06151 1.19265 0.96357 0.93468 0.76782 1.21490 0.96931 1.31942 1.06269 0.92408 1.24916 0.97874 0.94871 0.96356 1.69937 1.35613 1.33424 1.14364 0.86444 0.84611 0.78090 0.78287 1.19833 1.20961 1.20846 1.15884 0.78973 0.84941 0.79975 1.90826 1.51432 1.16773 1.85378 1.42931 1.73075 1.14240 1.03399 1.17192 1.00293 0.91543 0.84194 1.21410 1.05649 0.93227 0.98333 1.18083 1.00237 0.83718 0.90846 1.86134 1.85780 1.16095 1.33726 1.23148 1.01335 0.97574 0.85107 1.17770 1.03439 0.89065 0.85023 1.86203 1.86522 1.35129 1.13766 1.23061 1.00305 0.97188 0.86456 1.20621 1.09125 0.92663 0.98016 1.16814 1.09605 0.77463 0.93220 1.91448 1.93771 1.29370 1.97182 0.91964 0.93067 0.91716 0.89300 0.92422 0.94629 0.93659 0.92742 0.75650 0.80692 0.88246 0.91534 0.92572 0.92717 0.88280 0.92783 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.63 5.94 -4.04 -0.02 1.61 16 3 N -0.60 -12.39 2.46 -180.80 -0.44 -12.83 16 4 C 0.26 6.57 5.16 -5.20 -0.03 6.54 16 5 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.70 14.55 8.08 -86.92 -0.70 13.85 16 14 O -0.57 -13.70 13.09 5.29 0.07 -13.64 16 15 N -0.69 -11.51 5.20 -14.13 -0.07 -11.59 16 16 C 0.17 2.72 6.44 -83.52 -0.54 2.18 16 17 C -0.16 -2.75 7.70 -39.28 -0.30 -3.05 16 18 C 0.12 1.84 6.70 -39.15 -0.26 1.57 16 19 O -0.30 -4.59 10.28 -34.46 -0.35 -4.94 16 20 C 0.02 0.29 9.81 101.05 0.99 1.28 16 21 C 0.09 1.31 6.70 -39.13 -0.26 1.05 16 22 O -0.30 -3.87 10.28 -34.55 -0.36 -4.23 16 23 C 0.03 0.20 9.81 101.05 0.99 1.19 16 24 C -0.18 -2.32 9.01 -39.42 -0.36 -2.67 16 25 C 0.05 0.74 7.30 -39.27 -0.29 0.46 16 26 F -0.14 -1.92 16.80 2.25 0.04 -1.88 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.76 6.29 -51.93 -0.33 0.43 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.41 5.74 6.14 -40.82 -0.25 5.49 16 36 H 0.18 3.19 4.02 -52.49 -0.21 2.98 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.92 7.66 -51.93 -0.40 0.53 16 39 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 40 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 43 H 0.15 1.40 6.29 -52.48 -0.33 1.07 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -33.15 363.76 -6.33 -39.48 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.59 Total: 3.92 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.82 Total: 8.82 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.22 Total: -49.71 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.64 Total: -22.81 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.15 -6.33 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078575703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.912 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds