Wall clock time and date at job start Tue Mar 31 2020 15:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46910 * 2 1 4 4 C 1.46499 * 119.99506 * 269.99786 * 3 2 1 5 5 C 1.50697 * 109.47268 * 269.99939 * 4 3 2 6 6 H 1.08007 * 120.00099 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00337 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99463 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00285 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47060 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47221 * 120.00007 * 9 7 5 12 12 H 1.48503 * 109.47327 * 240.00031 * 9 7 5 13 13 C 1.34773 * 120.00211 * 89.99667 * 3 2 1 14 14 O 1.21591 * 120.00049 * 179.97438 * 13 3 2 15 15 N 1.34782 * 119.99901 * 0.02562 * 13 3 2 16 16 C 1.40265 * 120.00080 * 185.62408 * 15 13 3 17 17 C 1.38806 * 119.99982 * 24.77579 * 16 15 13 18 18 C 1.38485 * 119.95144 * 180.02562 * 17 16 15 19 19 O 1.36030 * 120.01617 * 180.02562 * 18 17 16 20 20 C 1.42900 * 117.00238 * 359.97438 * 19 18 17 21 21 C 1.39152 * 119.96763 * 359.97438 * 18 17 16 22 22 O 1.36057 * 119.99551 * 180.02562 * 21 18 17 23 23 C 1.42900 * 116.99936 * 179.97438 * 22 21 18 24 24 C 1.38547 * 120.00319 * 0.02562 * 21 18 17 25 25 C 1.38365 * 120.05055 * 0.02562 * 24 21 18 26 26 F 1.35099 * 119.98543 * 179.97438 * 25 24 21 27 27 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47230 * 300.00044 * 1 2 3 29 29 H 1.08999 * 109.46761 * 60.00464 * 1 2 3 30 30 H 1.09000 * 109.47230 * 239.99956 * 2 1 3 31 31 H 1.09004 * 109.47180 * 119.99672 * 2 1 3 32 32 H 1.08998 * 109.47391 * 30.00562 * 4 3 2 33 33 H 1.09004 * 109.46460 * 150.00406 * 4 3 2 34 34 H 0.97005 * 119.99547 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99960 * 5.62337 * 15 13 3 36 36 H 1.07992 * 120.02084 * 0.04384 * 17 16 15 37 37 H 1.08998 * 109.47537 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46740 * 299.99696 * 20 19 18 39 39 H 1.08992 * 109.47118 * 59.99671 * 20 19 18 40 40 H 1.08999 * 109.47074 * 59.99543 * 23 22 21 41 41 H 1.09000 * 109.47266 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47053 * 299.99821 * 23 22 21 43 43 H 1.08005 * 119.97352 * 180.27772 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3904 -2.8775 8 7 3.3496 3.1272 -3.6172 9 14 5.9138 2.0975 -3.4164 10 1 6.6011 1.2414 -2.4164 11 1 5.9218 1.4189 -4.7372 12 1 6.6210 3.3989 -3.5242 13 6 2.2429 2.0167 1.1671 14 8 2.6486 3.1629 1.1671 15 7 2.0187 1.3812 2.3344 16 6 2.1385 2.0773 3.5462 17 6 1.9742 3.4553 3.5742 18 6 2.0931 4.1416 4.7711 19 8 1.9318 5.4920 4.8001 20 6 1.6420 6.1376 3.5587 21 6 2.3767 3.4491 5.9443 22 8 2.4932 4.1228 7.1206 23 6 2.7848 3.3483 8.2856 24 6 2.5403 2.0736 5.9145 25 6 2.4226 1.3876 4.7187 26 9 2.5830 0.0464 4.6911 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6757 3.5176 -4.4431 35 1 1.7745 0.4424 2.3364 36 1 1.7534 3.9917 2.6633 37 1 1.5382 7.2102 3.7224 38 1 2.4547 5.9548 2.8556 39 1 0.7125 5.7404 3.1509 40 1 3.7342 2.8304 8.1493 41 1 2.8504 4.0062 9.1522 42 1 1.9917 2.6174 8.4439 43 1 2.7560 1.5360 6.8261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078575703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:57 Heat of formation + Delta-G solvation = -126.558720 kcal Electronic energy + Delta-G solvation = -28461.758807 eV Core-core repulsion = 24229.552770 eV Total energy + Delta-G solvation = -4232.206037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95549 -42.01663 -41.09517 -39.44921 -38.21230 -36.99144 -35.53840 -34.66618 -31.68982 -31.16056 -30.71230 -28.98967 -28.10203 -27.78009 -25.16396 -24.45529 -23.63217 -23.20249 -20.99746 -20.08957 -19.26725 -18.85174 -18.55211 -18.06356 -17.77534 -17.27485 -16.99967 -16.64182 -16.50427 -16.28904 -16.14170 -15.81559 -15.58544 -15.52931 -15.10708 -14.60481 -14.48987 -14.37337 -13.78455 -13.64200 -13.54687 -13.30343 -13.18197 -13.09588 -12.74070 -12.62378 -12.53654 -12.39451 -12.34271 -12.22380 -12.10514 -11.95218 -11.70400 -11.07300 -10.84256 -10.64125 -9.72795 -9.50105 -8.58009 -8.22002 -6.36388 0.00261 0.06509 1.36048 1.38370 1.48277 1.55515 2.00794 2.21822 2.28877 2.37562 2.51414 2.86980 3.07778 3.08593 3.57419 3.88192 3.99034 4.01694 4.25957 4.32241 4.32734 4.37794 4.38599 4.47622 4.48278 4.62258 4.69712 4.76562 4.81090 4.87681 4.91951 4.97387 5.04201 5.17220 5.22682 5.32837 5.54864 5.62745 5.74308 5.94554 6.00586 6.05808 6.47212 6.71934 6.93241 7.29608 7.52009 8.84300 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003514 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.873297 B = 7966.158341 C = 8645.048042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.609 5.609 4 C 0.279 3.721 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.697 3.303 14 O -0.610 6.610 15 N -0.671 5.671 16 C 0.139 3.861 17 C -0.177 4.177 18 C 0.101 3.899 19 O -0.313 6.313 20 C 0.024 3.976 21 C 0.101 3.899 22 O -0.320 6.320 23 C 0.012 3.988 24 C -0.170 4.170 25 C 0.061 3.939 26 F -0.132 7.132 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.004 0.996 34 H 0.267 0.733 35 H 0.419 0.581 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 -4.978 21.209 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.342 5.342 4 C 0.158 3.842 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.789 3.211 10 H -0.195 1.195 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.399 3.601 14 O -0.490 6.490 15 N -0.321 5.321 16 C 0.041 3.959 17 C -0.198 4.198 18 C 0.054 3.946 19 O -0.227 6.227 20 C -0.071 4.071 21 C 0.054 3.946 22 O -0.233 6.233 23 C -0.082 4.082 24 C -0.189 4.189 25 C 0.039 3.961 26 F -0.111 7.111 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.259 0.741 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.688 -3.824 21.105 22.190 hybrid contribution 0.806 -0.722 -1.133 1.567 sum -4.882 -4.546 19.972 21.057 Atomic orbital electron populations 1.22160 0.94237 1.03710 1.01790 1.21732 0.95548 0.81394 1.03758 1.47524 1.66810 1.15186 1.04721 1.18695 0.95241 0.91571 0.78726 1.21734 0.97962 1.31977 1.06467 0.93207 1.25768 1.02078 0.94501 0.96417 1.70042 1.37521 1.34100 1.14817 0.85418 0.79373 0.77954 0.78347 1.19532 1.19354 1.20787 1.16015 0.78702 0.84538 0.80887 1.90803 1.53271 1.18768 1.86200 1.42562 1.72602 1.14573 1.02397 1.17364 1.02375 0.91648 0.84500 1.21213 1.06806 0.93665 0.98141 1.18291 1.00980 0.83960 0.91337 1.86110 1.85892 1.16091 1.34606 1.23252 1.00467 0.99166 0.84177 1.17864 1.02053 0.89469 0.85210 1.86199 1.86234 1.36554 1.14357 1.23464 1.01546 0.98072 0.85106 1.20930 1.07289 0.92079 0.98629 1.16816 1.08746 0.77661 0.92920 1.91467 1.93648 1.28849 1.97155 0.88345 0.92823 0.93515 0.89832 0.89527 0.95186 0.97804 0.92378 0.74115 0.83006 0.85173 0.93694 0.92460 0.91457 0.86118 0.90956 0.79777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.10 2.98 5.94 86.38 0.51 3.49 16 3 N -0.61 -25.77 2.46 -844.18 -2.07 -27.84 16 4 C 0.28 14.77 5.16 85.63 0.44 15.21 16 5 C -0.54 -31.08 9.39 25.60 0.24 -30.84 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.67 5.46 84.65 0.46 1.13 16 8 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 9 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.70 29.98 8.08 179.05 1.45 31.42 16 14 O -0.61 -31.33 13.09 -4.00 -0.05 -31.38 16 15 N -0.67 -22.47 5.20 -316.89 -1.65 -24.12 16 16 C 0.14 4.52 6.44 38.10 0.25 4.76 16 17 C -0.18 -6.13 7.70 22.46 0.17 -5.95 16 18 C 0.10 3.17 6.70 22.55 0.15 3.32 16 19 O -0.31 -9.62 10.28 -79.91 -0.82 -10.44 16 20 C 0.02 0.63 9.81 113.37 1.11 1.74 16 21 C 0.10 2.66 6.70 22.56 0.15 2.81 16 22 O -0.32 -7.45 10.28 -80.21 -0.82 -8.27 16 23 C 0.01 0.15 9.81 113.37 1.11 1.26 16 24 C -0.17 -3.78 9.01 22.37 0.20 -3.58 16 25 C 0.06 1.64 7.30 22.47 0.16 1.80 16 26 F -0.13 -3.28 16.80 44.97 0.76 -2.52 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 31 H 0.09 2.11 6.29 -2.38 -0.01 2.10 16 32 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.00 0.23 7.42 -2.39 -0.02 0.22 16 34 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 35 H 0.42 11.31 6.14 -92.71 -0.57 10.74 16 36 H 0.15 6.00 4.02 -2.91 -0.01 5.99 16 37 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.04 1.36 7.66 -2.38 -0.02 1.35 16 39 H 0.06 1.46 7.66 -2.39 -0.02 1.45 16 40 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 41 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 43 H 0.19 2.65 6.29 -2.91 -0.02 2.63 16 Total: -1.00 -74.88 363.76 5.29 -69.59 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.49 Total: 19.50 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.15 Total: 23.36 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.43 Total: -106.81 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -1.70 Total: -50.09 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.76 Total: -2.52 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -74.88 5.29 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078575703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.968 kcal (2) G-P(sol) polarization free energy of solvation -74.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds