Wall clock time and date at job start Tue Mar 31 2020 14:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36029 * 116.99939 * 2 1 4 4 C 1.38666 * 119.97212 * 0.02562 * 3 2 1 5 5 C 1.38494 * 119.98546 * 179.97438 * 4 3 2 6 6 O 1.36024 * 120.03706 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99549 * 359.97438 * 6 5 4 8 8 C 1.39266 * 119.93609 * 0.02562 * 5 4 3 9 9 N 1.40361 * 120.02799 * 179.97438 * 8 5 4 10 10 C 1.34771 * 119.99767 * 214.93615 * 9 8 5 11 11 O 1.21595 * 120.00049 * 355.56154 * 10 9 8 12 12 N 1.34783 * 119.99747 * 175.56731 * 10 9 8 13 13 C 1.46494 * 119.99983 * 359.97438 * 12 10 9 14 14 C 1.46499 * 119.99830 * 180.02562 * 12 10 9 15 15 H 1.09000 * 109.47329 * 359.97438 * 14 12 10 16 16 C 1.52996 * 109.47314 * 119.99765 * 14 12 10 17 17 C 1.50700 * 109.47004 * 239.99628 * 14 12 10 18 18 H 1.07998 * 119.99930 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00117 * 180.02562 * 17 14 12 20 20 N 1.31519 * 119.99845 * 179.97438 * 19 17 14 21 21 Si 1.86798 * 120.00134 * 0.02562 * 19 17 14 22 22 H 1.48496 * 109.47346 * 89.99637 * 21 19 17 23 23 H 1.48498 * 109.47326 * 210.00235 * 21 19 17 24 24 H 1.48502 * 109.46704 * 329.99970 * 21 19 17 25 25 C 1.38687 * 119.94319 * 0.25201 * 8 5 4 26 26 C 1.38352 * 120.01561 * 359.48894 * 25 8 5 27 27 F 1.35104 * 119.96779 * 180.25374 * 26 25 8 28 28 H 1.09008 * 109.47284 * 299.99639 * 1 2 3 29 29 H 1.09001 * 109.47861 * 59.99924 * 1 2 3 30 30 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.01067 * 359.95985 * 4 3 2 32 32 H 1.08993 * 109.47474 * 300.00240 * 7 6 5 33 33 H 1.09001 * 109.46871 * 60.00764 * 7 6 5 34 34 H 1.09004 * 109.47316 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99727 * 34.93491 * 9 8 5 36 36 H 1.09003 * 109.47480 * 270.00581 * 13 12 10 37 37 H 1.09000 * 109.47169 * 30.00369 * 13 12 10 38 38 H 1.09001 * 109.47626 * 150.00150 * 13 12 10 39 39 H 1.09000 * 109.47225 * 59.99566 * 16 14 12 40 40 H 1.08998 * 109.47148 * 179.97438 * 16 14 12 41 41 H 1.09008 * 109.47138 * 300.00083 * 16 14 12 42 42 H 0.97001 * 119.99971 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.98971 * 179.72631 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2907 2.3746 0.0005 5 6 1.9191 3.6088 0.0011 6 8 1.1787 4.7498 0.0021 7 6 -0.2425 4.6009 0.0021 8 6 3.3099 3.6804 0.0005 9 7 3.9489 4.9302 0.0005 10 6 5.1073 5.0947 -0.6683 11 8 5.6406 4.1423 -1.2040 12 7 5.6747 6.3150 -0.7432 13 6 5.0319 7.4625 -0.0982 14 6 6.9336 6.4940 -1.4707 15 1 7.2564 5.5364 -1.8794 16 6 6.7259 7.4920 -2.6116 17 6 7.9872 7.0189 -0.5298 18 1 7.7436 7.2005 0.5065 19 6 9.2623 7.2672 -0.9919 20 7 10.1817 7.7257 -0.1708 21 14 9.6836 6.9537 -2.7846 22 1 9.4248 8.1831 -3.5762 23 1 11.1173 6.5839 -2.8988 24 1 8.8435 5.8446 -3.3038 25 6 4.0631 2.5159 -0.0058 26 6 3.4331 1.2842 -0.0009 27 9 4.1678 0.1504 -0.0020 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2122 2.3178 0.0003 32 1 -0.5504 4.0528 -0.8883 33 1 -0.5502 4.0514 0.8917 34 1 -0.7110 5.5852 0.0034 35 1 3.5566 5.6754 0.4819 36 1 4.3476 7.9381 -0.8008 37 1 4.4768 7.1237 0.7766 38 1 5.7929 8.1796 0.2098 39 1 6.4033 8.4494 -2.2026 40 1 7.6627 7.6255 -3.1526 41 1 5.9638 7.1123 -3.2923 42 1 11.0788 7.9001 -0.4959 43 1 5.1417 2.5706 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088399978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:37 Heat of formation + Delta-G solvation = -91.924095 kcal Electronic energy + Delta-G solvation = -28385.967015 eV Core-core repulsion = 24155.262848 eV Total energy + Delta-G solvation = -4230.704167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.60839 -40.94387 -39.70596 -38.96637 -36.96899 -35.50518 -34.20395 -32.63408 -30.54055 -30.12333 -29.05866 -28.27339 -26.61725 -26.20105 -25.11883 -23.14555 -22.50144 -21.24865 -19.34451 -19.07146 -18.14326 -17.48862 -17.21065 -16.77473 -16.49843 -16.26257 -15.81219 -15.71662 -15.07747 -15.02259 -14.99817 -14.91764 -14.42921 -14.02382 -13.57847 -13.38603 -13.09690 -12.83313 -12.70683 -12.49294 -12.23039 -12.16595 -11.94740 -11.84344 -11.74913 -11.68936 -11.54828 -11.17971 -10.86355 -10.72058 -10.15119 -9.78346 -9.63692 -9.49547 -9.25871 -8.68713 -8.62643 -7.87429 -7.46878 -6.14503 -4.15324 1.05597 1.12805 2.86512 2.92286 3.07775 3.24793 3.33664 3.38898 3.42047 3.79135 4.17931 4.35873 4.36628 4.50963 4.61801 4.72658 4.80735 4.82969 4.92513 5.11799 5.14067 5.17594 5.20503 5.54778 5.58580 5.64792 5.77902 5.87794 5.95523 6.19924 6.26028 6.33432 6.44758 6.47500 6.73079 6.82656 6.85132 6.91149 7.24133 7.34034 7.52084 7.62616 8.34219 8.49166 8.85667 9.05304 9.46518 10.98114 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.003290 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.259139 B = 8507.842692 C = 9469.782732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.108 3.892 4 C -0.253 4.253 5 C 0.124 3.876 6 O -0.309 6.309 7 C 0.028 3.972 8 C 0.148 3.852 9 N -0.682 5.682 10 C 0.700 3.300 11 O -0.582 6.582 12 N -0.596 5.596 13 C 0.082 3.918 14 C 0.244 3.756 15 H 0.065 0.935 16 C -0.161 4.161 17 C -0.529 4.529 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.895 5.895 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.262 1.262 25 C -0.084 4.084 26 C 0.057 3.943 27 F -0.130 7.130 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.145 0.855 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.409 0.591 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.536 -7.491 1.522 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.060 3.940 4 C -0.273 4.273 5 C 0.075 3.925 6 O -0.222 6.222 7 C -0.067 4.067 8 C 0.051 3.949 9 N -0.332 5.332 10 C 0.402 3.598 11 O -0.460 6.460 12 N -0.330 5.330 13 C -0.061 4.061 14 C 0.142 3.858 15 H 0.083 0.917 16 C -0.219 4.219 17 C -0.567 4.567 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.187 1.187 25 C -0.105 4.105 26 C 0.037 3.963 27 F -0.109 7.109 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.247 0.753 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -23.712 -8.038 1.120 25.063 hybrid contribution -0.302 0.235 -0.642 0.747 sum -24.014 -7.803 0.478 25.255 Atomic orbital electron populations 1.23077 0.78400 1.04110 1.01228 1.86167 1.21327 1.25679 1.88889 1.18612 0.90480 0.84883 0.99977 1.20815 1.00334 0.90490 1.15656 1.18446 0.89312 0.85318 0.99389 1.86091 1.19051 1.28246 1.88845 1.23070 0.78390 1.04047 1.01213 1.16391 0.86830 0.85842 1.05838 1.42661 1.24815 1.10994 1.54773 1.15901 0.80036 0.84411 0.79402 1.90858 1.63830 1.39091 1.52229 1.47149 1.25352 1.05248 1.55220 1.21617 0.98321 0.90406 0.95794 1.19243 0.79867 0.96877 0.89786 0.91702 1.22462 0.99763 1.00851 0.98831 1.21169 0.93692 1.44580 0.97299 0.90267 1.24848 0.95971 0.94187 0.97653 1.69874 1.03564 1.44521 1.35269 0.86918 0.77158 0.79107 0.85541 1.20419 1.22137 1.18684 1.21154 1.02889 0.87978 0.98521 1.16612 0.85465 0.82915 1.11343 1.91495 1.76615 1.48303 1.94498 0.92653 0.92646 0.88033 0.83789 0.92666 0.92681 0.87977 0.75309 0.93571 0.93131 0.89112 0.92577 0.93092 0.94788 0.92408 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.66 10.36 -19.83 -0.21 -3.86 16 3 C 0.11 1.41 6.69 -39.20 -0.26 1.15 16 4 C -0.25 -2.77 8.02 -39.33 -0.32 -3.08 16 5 C 0.12 1.56 6.70 -39.11 -0.26 1.29 16 6 O -0.31 -3.33 10.05 -19.82 -0.20 -3.53 16 7 C 0.03 0.17 9.81 101.05 0.99 1.16 16 8 C 0.15 2.29 6.33 -83.40 -0.53 1.76 16 9 N -0.68 -11.00 5.07 -14.06 -0.07 -11.07 16 10 C 0.70 14.29 8.13 -86.92 -0.71 13.58 16 11 O -0.58 -13.80 13.09 5.28 0.07 -13.73 16 12 N -0.60 -12.21 2.75 -181.01 -0.50 -12.71 16 13 C 0.08 1.31 9.23 59.84 0.55 1.86 16 14 C 0.24 5.86 2.23 -69.08 -0.15 5.71 16 15 H 0.07 1.74 5.96 -51.93 -0.31 1.43 16 16 C -0.16 -3.46 8.67 37.16 0.32 -3.13 16 17 C -0.53 -14.46 8.57 -34.44 -0.30 -14.76 16 18 H 0.08 2.32 7.58 -52.49 -0.40 1.92 16 19 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 20 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 21 Si 0.88 21.81 24.37 -169.99 -4.14 17.66 16 22 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 25 C -0.08 -1.40 8.67 -39.37 -0.34 -1.74 16 26 C 0.06 0.89 7.30 -39.31 -0.29 0.61 16 27 F -0.13 -2.17 17.10 2.25 0.04 -2.13 16 28 H 0.05 0.29 7.66 -51.92 -0.40 -0.11 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.14 1.08 4.52 -52.49 -0.24 0.84 16 32 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 33 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.41 5.52 6.27 -40.82 -0.26 5.26 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.65 6.30 -51.93 -0.33 0.33 16 38 H 0.09 1.58 7.02 -51.93 -0.36 1.22 16 39 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 40 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 41 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.17 3.26 6.19 -52.49 -0.32 2.94 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -34.12 349.18 -4.61 -38.74 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.25 Total: 3.75 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.39 Total: 7.65 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.20 Total: -49.80 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.34 Total: -21.13 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.12 -4.61 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088399978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.189 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds