Wall clock time and date at job start Tue Mar 31 2020 14:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36029 * 116.99939 * 2 1 4 4 C 1.38666 * 119.97212 * 0.02562 * 3 2 1 5 5 C 1.38494 * 119.98546 * 179.97438 * 4 3 2 6 6 O 1.36024 * 120.03706 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99549 * 359.97438 * 6 5 4 8 8 C 1.39266 * 119.93609 * 0.02562 * 5 4 3 9 9 N 1.40361 * 120.02799 * 179.97438 * 8 5 4 10 10 C 1.34771 * 119.99767 * 214.93615 * 9 8 5 11 11 O 1.21595 * 120.00049 * 355.56154 * 10 9 8 12 12 N 1.34783 * 119.99747 * 175.56731 * 10 9 8 13 13 C 1.46494 * 119.99983 * 359.97438 * 12 10 9 14 14 C 1.46499 * 119.99830 * 180.02562 * 12 10 9 15 15 H 1.09000 * 109.47329 * 359.97438 * 14 12 10 16 16 C 1.52996 * 109.47314 * 119.99765 * 14 12 10 17 17 C 1.50700 * 109.47004 * 239.99628 * 14 12 10 18 18 H 1.07998 * 119.99930 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00117 * 180.02562 * 17 14 12 20 20 N 1.31519 * 119.99845 * 179.97438 * 19 17 14 21 21 Si 1.86798 * 120.00134 * 0.02562 * 19 17 14 22 22 H 1.48496 * 109.47346 * 89.99637 * 21 19 17 23 23 H 1.48498 * 109.47326 * 210.00235 * 21 19 17 24 24 H 1.48502 * 109.46704 * 329.99970 * 21 19 17 25 25 C 1.38687 * 119.94319 * 0.25201 * 8 5 4 26 26 C 1.38352 * 120.01561 * 359.48894 * 25 8 5 27 27 F 1.35104 * 119.96779 * 180.25374 * 26 25 8 28 28 H 1.09008 * 109.47284 * 299.99639 * 1 2 3 29 29 H 1.09001 * 109.47861 * 59.99924 * 1 2 3 30 30 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.01067 * 359.95985 * 4 3 2 32 32 H 1.08993 * 109.47474 * 300.00240 * 7 6 5 33 33 H 1.09001 * 109.46871 * 60.00764 * 7 6 5 34 34 H 1.09004 * 109.47316 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99727 * 34.93491 * 9 8 5 36 36 H 1.09003 * 109.47480 * 270.00581 * 13 12 10 37 37 H 1.09000 * 109.47169 * 30.00369 * 13 12 10 38 38 H 1.09001 * 109.47626 * 150.00150 * 13 12 10 39 39 H 1.09000 * 109.47225 * 59.99566 * 16 14 12 40 40 H 1.08998 * 109.47148 * 179.97438 * 16 14 12 41 41 H 1.09008 * 109.47138 * 300.00083 * 16 14 12 42 42 H 0.97001 * 119.99971 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.98971 * 179.72631 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2907 2.3746 0.0005 5 6 1.9191 3.6088 0.0011 6 8 1.1787 4.7498 0.0021 7 6 -0.2425 4.6009 0.0021 8 6 3.3099 3.6804 0.0005 9 7 3.9489 4.9302 0.0005 10 6 5.1073 5.0947 -0.6683 11 8 5.6406 4.1423 -1.2040 12 7 5.6747 6.3150 -0.7432 13 6 5.0319 7.4625 -0.0982 14 6 6.9336 6.4940 -1.4707 15 1 7.2564 5.5364 -1.8794 16 6 6.7259 7.4920 -2.6116 17 6 7.9872 7.0189 -0.5298 18 1 7.7436 7.2005 0.5065 19 6 9.2623 7.2672 -0.9919 20 7 10.1817 7.7257 -0.1708 21 14 9.6836 6.9537 -2.7846 22 1 9.4248 8.1831 -3.5762 23 1 11.1173 6.5839 -2.8988 24 1 8.8435 5.8446 -3.3038 25 6 4.0631 2.5159 -0.0058 26 6 3.4331 1.2842 -0.0009 27 9 4.1678 0.1504 -0.0020 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2122 2.3178 0.0003 32 1 -0.5504 4.0528 -0.8883 33 1 -0.5502 4.0514 0.8917 34 1 -0.7110 5.5852 0.0034 35 1 3.5566 5.6754 0.4819 36 1 4.3476 7.9381 -0.8008 37 1 4.4768 7.1237 0.7766 38 1 5.7929 8.1796 0.2098 39 1 6.4033 8.4494 -2.2026 40 1 7.6627 7.6255 -3.1526 41 1 5.9638 7.1123 -3.2923 42 1 11.0788 7.9001 -0.4959 43 1 5.1417 2.5706 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088399978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:36 Heat of formation + Delta-G solvation = -117.052371 kcal Electronic energy + Delta-G solvation = -28387.056659 eV Core-core repulsion = 24155.262848 eV Total energy + Delta-G solvation = -4231.793811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.81822 -42.07857 -41.00066 -39.83479 -38.16458 -37.05920 -35.62111 -34.56587 -32.26278 -31.13597 -30.11960 -28.86630 -27.75741 -27.25488 -27.10450 -24.41900 -23.55046 -22.73328 -20.86444 -20.04529 -19.45010 -18.93042 -18.52818 -18.13401 -17.69344 -17.29843 -17.25859 -16.63007 -16.51101 -16.39465 -16.04238 -15.76425 -15.69941 -15.37244 -15.14576 -14.66707 -14.47243 -14.25862 -14.01314 -13.90391 -13.63892 -13.45542 -13.18967 -13.02136 -12.92733 -12.64527 -12.48841 -12.45441 -12.40726 -12.03629 -11.84861 -11.57498 -11.37189 -11.10570 -10.83545 -10.78175 -9.78115 -9.45005 -8.61820 -8.34042 -6.38324 -0.00812 0.05012 1.27345 1.37692 1.46260 1.57915 2.00735 2.11477 2.19053 2.29132 2.48747 2.90465 3.01993 3.23164 3.56562 3.78037 4.03685 4.27617 4.31755 4.40815 4.41257 4.46190 4.46282 4.50761 4.55030 4.58952 4.59494 4.72944 4.74552 4.76548 4.82382 4.88434 4.96519 5.07470 5.23527 5.27673 5.51129 5.57415 5.67894 5.93244 6.07232 6.31415 6.35005 6.63584 6.96127 7.25378 7.52623 8.81928 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.003290 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.259139 B = 8507.842692 C = 9469.782732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.123 3.877 4 C -0.237 4.237 5 C 0.146 3.854 6 O -0.318 6.318 7 C 0.012 3.988 8 C 0.117 3.883 9 N -0.664 5.664 10 C 0.695 3.305 11 O -0.624 6.624 12 N -0.605 5.605 13 C 0.080 3.920 14 C 0.248 3.752 15 H 0.032 0.968 16 C -0.153 4.153 17 C -0.526 4.526 18 H 0.047 0.953 19 C 0.024 3.976 20 N -0.939 5.939 21 Si 0.940 3.060 22 H -0.252 1.252 23 H -0.297 1.297 24 H -0.263 1.263 25 C -0.099 4.099 26 C 0.024 3.976 27 F -0.146 7.146 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.189 0.811 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.422 0.578 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.268 0.732 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.031 -7.065 0.674 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.075 3.925 4 C -0.257 4.257 5 C 0.097 3.903 6 O -0.231 6.231 7 C -0.081 4.081 8 C 0.021 3.979 9 N -0.315 5.315 10 C 0.397 3.603 11 O -0.505 6.505 12 N -0.338 5.338 13 C -0.063 4.063 14 C 0.144 3.856 15 H 0.050 0.950 16 C -0.210 4.210 17 C -0.564 4.564 18 H 0.065 0.935 19 C -0.175 4.175 20 N -0.579 5.579 21 Si 0.767 3.233 22 H -0.177 1.177 23 H -0.224 1.224 24 H -0.188 1.188 25 C -0.121 4.121 26 C 0.003 3.997 27 F -0.125 7.125 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.206 0.794 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.262 0.738 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.298 -7.589 0.301 29.299 hybrid contribution 0.852 0.024 -0.253 0.889 sum -27.447 -7.565 0.048 28.470 Atomic orbital electron populations 1.23531 0.75355 1.06251 1.03055 1.86166 1.24454 1.25079 1.88359 1.18617 0.89526 0.86272 0.98046 1.21162 1.02163 0.88724 1.13645 1.18351 0.88233 0.86642 0.97037 1.86104 1.21559 1.27325 1.88133 1.23519 0.75544 1.06206 1.02871 1.16516 0.88282 0.84778 1.08368 1.42317 1.23449 1.11872 1.53889 1.16069 0.80965 0.83736 0.79528 1.90834 1.65249 1.40404 1.54057 1.47086 1.24593 1.06624 1.55539 1.21834 0.98194 0.88727 0.97503 1.18889 0.80767 0.95703 0.90190 0.94971 1.22308 1.00073 1.00761 0.97905 1.21379 0.94901 1.43575 0.96592 0.93451 1.25610 0.95929 0.94148 1.01769 1.69999 1.04122 1.46422 1.37348 0.86000 0.76460 0.79867 0.80990 1.17681 1.22442 1.18771 1.20851 1.01450 0.89515 1.00235 1.16793 0.86909 0.82057 1.13910 1.91437 1.77284 1.48930 1.94885 0.90541 0.90875 0.86062 0.79434 0.91229 0.90639 0.85851 0.73757 0.90452 0.90217 0.90989 0.90900 0.93887 0.92668 0.92253 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -7.05 10.36 -93.88 -0.97 -8.02 16 3 C 0.12 3.03 6.69 22.52 0.15 3.18 16 4 C -0.24 -4.35 8.02 22.43 0.18 -4.17 16 5 C 0.15 3.31 6.70 22.58 0.15 3.46 16 6 O -0.32 -5.61 10.05 -93.82 -0.94 -6.56 16 7 C 0.01 0.09 9.81 113.37 1.11 1.20 16 8 C 0.12 3.59 6.33 38.13 0.24 3.83 16 9 N -0.66 -21.25 5.07 -316.67 -1.61 -22.86 16 10 C 0.70 29.03 8.13 179.05 1.46 30.48 16 11 O -0.62 -31.26 13.09 -4.01 -0.05 -31.31 16 12 N -0.60 -24.92 2.75 -844.85 -2.33 -27.25 16 13 C 0.08 2.43 9.23 127.77 1.18 3.61 16 14 C 0.25 12.09 2.23 44.24 0.10 12.19 16 15 H 0.03 1.79 5.96 -2.39 -0.01 1.77 16 16 C -0.15 -6.33 8.67 71.98 0.62 -5.70 16 17 C -0.53 -29.70 8.57 25.60 0.22 -29.48 16 18 H 0.05 2.91 7.58 -2.91 -0.02 2.88 16 19 C 0.02 1.40 5.45 84.65 0.46 1.87 16 20 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 21 Si 0.94 45.54 24.37 68.60 1.67 47.21 16 22 H -0.25 -11.09 6.87 99.48 0.68 -10.41 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.26 -12.69 6.53 99.48 0.65 -12.04 16 25 C -0.10 -3.50 8.67 22.40 0.19 -3.30 16 26 C 0.02 0.77 7.30 22.44 0.16 0.93 16 27 F -0.15 -5.19 17.10 44.97 0.77 -4.42 16 28 H 0.08 0.40 7.66 -2.38 -0.02 0.39 16 29 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 30 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.19 1.69 4.52 -2.91 -0.01 1.68 16 32 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 33 H 0.08 0.28 7.66 -2.39 -0.02 0.26 16 34 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.42 10.74 6.27 -92.71 -0.58 10.15 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.92 6.30 -2.39 -0.02 1.91 16 38 H 0.07 2.49 7.02 -2.39 -0.02 2.47 16 39 H 0.07 2.74 7.67 -2.39 -0.02 2.72 16 40 H 0.04 1.84 3.27 -2.39 -0.01 1.84 16 41 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.14 5.74 6.19 -2.91 -0.02 5.72 16 Total: -1.00 -80.05 349.18 4.60 -75.46 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.41 Total: 16.12 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 7.34 Total: 19.32 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -3.63 Total: -107.80 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.97 Total: -45.89 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.77 Total: -4.42 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Total: -80.05 4.60 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088399978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.595 kcal (2) G-P(sol) polarization free energy of solvation -80.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds