Wall clock time and date at job start Tue Mar 31 2020 14:43:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08997 * 109.47048 * 2 1
4 4 N 1.46495 * 109.47101 * 119.99684 * 2 1 3
5 5 C 1.34780 * 120.00477 * 275.00270 * 4 2 1
6 6 O 1.21585 * 119.99324 * 359.97438 * 5 4 2
7 7 N 1.34772 * 120.00468 * 180.02562 * 5 4 2
8 8 C 1.39241 * 119.99956 * 174.57500 * 7 5 4
9 9 C 1.39476 * 119.83610 * 326.70720 * 8 7 5
10 10 C 1.36379 * 120.16618 * 179.75844 * 9 8 7
11 11 C 1.40872 * 119.82772 * 0.50826 * 10 9 8
12 12 C 1.41162 * 120.16033 * 179.72164 * 11 10 9
13 13 H 1.07993 * 119.99666 * 156.07485 * 12 11 10
14 14 C 1.39890 * 119.99996 * 336.07393 * 12 11 10
15 15 N 1.30881 * 120.00421 * 340.64428 * 14 12 11
16 16 Si 1.86805 * 119.99770 * 160.64365 * 14 12 11
17 17 H 1.48497 * 109.46930 * 94.72673 * 16 14 12
18 18 H 1.48505 * 109.47148 * 214.72806 * 16 14 12
19 19 H 1.48501 * 109.46884 * 334.72812 * 16 14 12
20 20 C 1.40861 * 119.67485 * 359.73994 * 11 10 9
21 21 C 1.36381 * 119.82566 * 0.02562 * 20 11 10
22 22 C 1.50690 * 109.46920 * 239.99861 * 2 1 3
23 23 C 1.38291 * 119.97135 * 279.72576 * 22 2 1
24 24 C 1.38246 * 120.11124 * 179.72735 * 23 22 2
25 25 C 1.38171 * 120.05867 * 0.54810 * 24 23 22
26 26 C 1.38719 * 119.93566 * 359.72603 * 25 24 23
27 27 O 1.35902 * 120.04734 * 179.97438 * 26 25 24
28 28 C 1.38124 * 119.97842 * 100.00087 * 22 2 1
29 29 H 1.08997 * 109.47087 * 180.02562 * 1 2 3
30 30 H 1.09003 * 109.47133 * 299.99750 * 1 2 3
31 31 H 1.08992 * 109.47386 * 60.00440 * 1 2 3
32 32 H 0.97002 * 120.00201 * 94.99769 * 4 2 1
33 33 H 0.97002 * 120.00193 * 354.58500 * 7 5 4
34 34 H 1.07992 * 119.91695 * 0.02562 * 9 8 7
35 35 H 1.08004 * 120.08471 * 180.25217 * 10 9 8
36 36 H 0.96999 * 120.00182 * 179.97438 * 15 14 12
37 37 H 1.08003 * 120.08852 * 179.97438 * 20 11 10
38 38 H 1.07997 * 119.91292 * 179.97438 * 21 20 11
39 39 H 1.07998 * 119.94695 * 359.97438 * 23 22 2
40 40 H 1.08003 * 119.97425 * 180.25178 * 24 23 22
41 41 H 1.07992 * 120.03280 * 179.70058 * 25 24 23
42 42 H 0.96693 * 114.00246 * 270.02012 * 27 26 25
43 43 H 1.08001 * 120.02093 * 0.02562 * 28 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0184 -0.6905 1.1962
5 6 2.1471 -0.0182 2.3572
6 8 1.8583 1.1616 2.4116
7 7 2.5968 -0.6533 3.4575
8 6 2.8372 0.0644 4.6262
9 6 3.2942 1.3800 4.5511
10 6 3.5272 2.0907 5.6915
11 6 3.3153 1.4893 6.9476
12 6 3.5599 2.2166 8.1324
13 1 3.0599 1.9397 9.0488
14 6 4.4498 3.2958 8.1196
15 7 5.3280 3.4085 7.1558
16 14 4.3848 4.5761 9.4784
17 1 5.3688 4.2275 10.5345
18 1 4.7134 5.9110 8.9168
19 1 3.0205 4.6076 10.0639
20 6 2.8587 0.1585 7.0154
21 6 2.6255 -0.5381 5.8663
22 6 2.0323 -0.7104 -1.2304
23 6 2.0717 -2.0924 -1.2625
24 6 2.5267 -2.7472 -2.3918
25 6 2.9539 -2.0218 -3.4875
26 6 2.9206 -0.6354 -3.4556
27 8 3.3407 0.0803 -4.5318
28 6 2.4582 0.0193 -2.3231
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5137 -0.8899
32 1 2.2490 -1.6317 1.1527
33 1 2.7531 -1.6104 3.4353
34 1 3.4599 1.8384 3.5874
35 1 3.8772 3.1107 5.6317
36 1 5.9448 4.1571 7.1467
37 1 2.6944 -0.3094 7.9749
38 1 2.2757 -1.5586 5.9167
39 1 1.7429 -2.6612 -0.4053
40 1 2.5527 -3.8266 -2.4160
41 1 3.3137 -2.5337 -4.3677
42 1 4.2823 0.2993 -4.5152
43 1 2.4318 1.0986 -2.2957
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000112416310.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:43:06
Heat of formation + Delta-G solvation = -24.294267 kcal
Electronic energy + Delta-G solvation = -25982.577991 eV
Core-core repulsion = 22185.575698 eV
Total energy + Delta-G solvation = -3797.002293 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.47216 -39.67200 -37.79794 -37.08188 -35.23866 -34.29784 -33.01049 -31.68318
-30.17254 -29.43600 -29.31961 -28.60375 -25.05827 -24.01502 -23.04632 -21.84875
-21.22762 -20.66387 -19.94126 -18.54280 -17.94233 -17.27983 -16.85395 -16.43452
-16.03598 -15.46362 -15.26642 -14.91506 -14.70213 -14.44873 -14.00584 -13.90202
-13.67614 -13.23883 -12.97849 -12.64575 -12.54018 -12.44014 -12.11430 -12.03260
-11.83725 -11.76625 -11.45157 -11.28716 -11.10176 -11.04135 -10.71332 -10.64178
-9.98993 -9.67326 -9.49997 -9.26070 -9.09257 -8.95047 -8.91415 -8.84676
-7.47604 -6.95421 -6.70287 -4.24402 0.88250 0.97119 2.70234 2.98034
3.09693 3.10370 3.14509 3.20231 3.33245 3.74868 3.85947 3.96113
4.35167 4.55256 4.64290 4.68046 4.77406 4.92743 5.11391 5.18285
5.26271 5.46338 5.56736 5.65720 5.74963 5.81533 6.02358 6.06401
6.14288 6.17763 6.18823 6.41860 6.45179 6.63345 6.85346 6.86197
7.08643 7.14179 7.30826 7.33500 7.38440 7.65671 7.89066 8.04309
8.09905 8.30548 8.52286 8.67110 8.92612 8.96463 9.15012 10.20685
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.023327 B = 0.002209 C = 0.002119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.044222 B =12671.970142 C =13208.246844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.202 3.798
3 H 0.098 0.902
4 N -0.748 5.748
5 C 0.696 3.304
6 O -0.575 6.575
7 N -0.666 5.666
8 C 0.014 3.986
9 C -0.086 4.086
10 C -0.156 4.156
11 C 0.104 3.896
12 C -0.459 4.459
13 H 0.078 0.922
14 C 0.076 3.924
15 N -0.790 5.790
16 Si 0.906 3.094
17 H -0.271 1.271
18 H -0.275 1.275
19 H -0.260 1.260
20 C -0.216 4.216
21 C -0.107 4.107
22 C -0.068 4.068
23 C -0.123 4.123
24 C -0.100 4.100
25 C -0.148 4.148
26 C 0.108 3.892
27 O -0.500 6.500
28 C -0.133 4.133
29 H 0.056 0.944
30 H 0.070 0.930
31 H 0.064 0.936
32 H 0.391 0.609
33 H 0.389 0.611
34 H 0.102 0.898
35 H 0.119 0.881
36 H 0.280 0.720
37 H 0.095 0.905
38 H 0.089 0.911
39 H 0.125 0.875
40 H 0.128 0.872
41 H 0.127 0.873
42 H 0.392 0.608
43 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.872 -10.507 -18.395 21.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.097 3.903
3 H 0.116 0.884
4 N -0.405 5.405
5 C 0.397 3.603
6 O -0.452 6.452
7 N -0.312 5.312
8 C -0.079 4.079
9 C -0.106 4.106
10 C -0.176 4.176
11 C 0.101 3.899
12 C -0.489 4.489
13 H 0.096 0.904
14 C -0.142 4.142
15 N -0.415 5.415
16 Si 0.730 3.270
17 H -0.196 1.196
18 H -0.200 1.200
19 H -0.184 1.184
20 C -0.236 4.236
21 C -0.127 4.127
22 C -0.069 4.069
23 C -0.141 4.141
24 C -0.118 4.118
25 C -0.167 4.167
26 C 0.063 3.937
27 O -0.311 6.311
28 C -0.152 4.152
29 H 0.075 0.925
30 H 0.089 0.911
31 H 0.083 0.917
32 H 0.225 0.775
33 H 0.222 0.778
34 H 0.120 0.880
35 H 0.136 0.864
36 H 0.091 0.909
37 H 0.113 0.887
38 H 0.107 0.893
39 H 0.143 0.857
40 H 0.146 0.854
41 H 0.145 0.855
42 H 0.248 0.752
43 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -3.510 -9.285 -18.605 21.088
hybrid contribution 0.788 -0.380 0.577 1.048
sum -2.722 -9.665 -18.028 20.636
Atomic orbital electron populations
1.22191 0.94298 1.02259 1.02944 1.19547 0.93973 0.96565 0.80230
0.88411 1.45253 1.73093 1.13416 1.08769 1.15971 0.78661 0.85428
0.80284 1.90925 1.56007 1.14205 1.84050 1.42096 1.68444 1.10421
1.10205 1.16950 1.13472 0.94424 0.83055 1.20435 0.98690 0.93260
0.98207 1.20963 1.05359 1.00089 0.91156 1.17649 0.88758 0.90267
0.93221 1.19518 1.21844 1.11077 0.96427 0.90431 1.25919 0.93533
0.98041 0.96744 1.69862 1.12685 1.28009 1.30946 0.86346 0.79774
0.79845 0.81034 1.19637 1.20035 1.18409 1.20498 1.12324 0.95156
0.95628 1.19984 1.02883 0.98166 0.91714 1.19892 0.98014 0.93816
0.95173 1.20973 1.00767 0.93754 0.98611 1.21016 0.98028 1.00017
0.92717 1.21442 1.02508 0.93374 0.99368 1.18426 0.98971 0.89716
0.86568 1.84817 1.30631 1.74162 1.41456 1.21304 1.00828 1.00828
0.92194 0.92480 0.91088 0.91687 0.77495 0.77770 0.87960 0.86361
0.90881 0.88689 0.89306 0.85738 0.85414 0.85462 0.75228 0.84994
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.75 9.46 37.16 0.35 -1.40 16
2 C 0.20 2.38 2.78 -69.09 -0.19 2.18 16
3 H 0.10 1.34 7.44 -51.93 -0.39 0.96 16
4 N -0.75 -9.45 5.03 -59.82 -0.30 -9.75 16
5 C 0.70 12.38 8.25 -86.92 -0.72 11.67 16
6 O -0.58 -12.78 13.66 5.29 0.07 -12.71 16
7 N -0.67 -11.83 5.32 -14.10 -0.07 -11.90 16
8 C 0.01 0.31 6.29 -83.57 -0.53 -0.22 16
9 C -0.09 -2.17 8.57 -39.79 -0.34 -2.51 16
10 C -0.16 -4.23 8.65 -39.26 -0.34 -4.57 16
11 C 0.10 2.81 5.58 -106.80 -0.60 2.22 16
12 C -0.46 -12.30 9.03 -37.85 -0.34 -12.64 16
13 H 0.08 1.98 7.92 -52.49 -0.42 1.57 16
14 C 0.08 1.92 5.11 -17.34 -0.09 1.84 16
15 N -0.79 -20.72 11.00 55.54 0.61 -20.11 16
16 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16
17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16
18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16
19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16
20 C -0.22 -5.29 9.74 -39.26 -0.38 -5.67 16
21 C -0.11 -2.37 9.89 -39.79 -0.39 -2.76 16
22 C -0.07 -0.67 4.95 -104.65 -0.52 -1.19 16
23 C -0.12 -1.02 9.06 -39.56 -0.36 -1.38 16
24 C -0.10 -0.75 10.04 -39.60 -0.40 -1.15 16
25 C -0.15 -1.20 9.99 -39.43 -0.39 -1.60 16
26 C 0.11 0.99 6.70 -39.22 -0.26 0.73 16
27 O -0.50 -4.15 13.50 -19.43 -0.26 -4.42 16
28 C -0.13 -1.30 9.61 -39.44 -0.38 -1.68 16
29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.39 3.76 6.87 -40.82 -0.28 3.48 16
33 H 0.39 5.35 8.83 -40.82 -0.36 4.99 16
34 H 0.10 2.62 6.38 -52.49 -0.34 2.28 16
35 H 0.12 3.33 6.17 -52.48 -0.32 3.01 16
36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16
37 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16
38 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16
39 H 0.12 0.83 6.89 -52.49 -0.36 0.47 16
40 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16
41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16
42 H 0.39 1.46 9.06 45.56 0.41 1.87 16
43 H 0.13 1.23 8.04 -52.49 -0.42 0.80 16
LS Contribution 365.68 15.07 5.51 5.51
Total: -1.00 -32.85 365.68 -9.92 -42.76
By element:
Atomic # 1 Polarization: 19.48 SS G_CDS: -4.57 Total: 14.92 kcal
Atomic # 6 Polarization: -12.26 SS G_CDS: -5.88 Total: -18.14 kcal
Atomic # 7 Polarization: -42.00 SS G_CDS: 0.24 Total: -41.76 kcal
Atomic # 8 Polarization: -16.94 SS G_CDS: -0.19 Total: -17.13 kcal
Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -32.85 -9.92 -42.76 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000112416310.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.469 kcal
(2) G-P(sol) polarization free energy of solvation -32.845 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.377 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.294 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds