Wall clock time and date at job start Tue Mar 31 2020 15:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47246 * 2 1 4 4 C 1.46507 * 120.00027 * 274.85100 * 3 2 1 5 5 C 1.50693 * 109.47094 * 263.31461 * 4 3 2 6 6 H 1.07999 * 120.00227 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99729 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99731 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00288 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46929 * 90.00147 * 9 7 5 11 11 H 1.48500 * 109.47275 * 210.00900 * 9 7 5 12 12 H 1.48506 * 109.47042 * 330.00514 * 9 7 5 13 13 C 1.34771 * 120.00313 * 94.85186 * 3 2 1 14 14 O 1.21367 * 119.99805 * 354.72534 * 13 3 2 15 15 C 1.49314 * 120.00314 * 174.71773 * 13 3 2 16 16 O 1.21390 * 120.00024 * 0.56945 * 15 13 3 17 17 N 1.34787 * 120.00092 * 180.56998 * 15 13 3 18 18 C 1.39359 * 119.99959 * 185.74135 * 17 15 13 19 19 C 1.37916 * 120.30624 * 23.96843 * 18 17 15 20 20 C 1.39122 * 120.74466 * 179.97438 * 19 18 17 21 21 C 1.36188 * 121.09335 * 0.06249 * 20 19 18 22 22 C 1.40524 * 119.96633 * 359.95681 * 21 20 19 23 23 C 1.40569 * 121.20564 * 180.02562 * 22 21 20 24 24 C 1.36101 * 119.66235 * 179.97438 * 23 22 21 25 25 C 1.39344 * 120.97470 * 359.97438 * 24 23 22 26 26 C 1.36166 * 120.95488 * 359.97438 * 25 24 23 27 27 C 1.40340 * 119.67707 * 0.02562 * 26 25 24 28 28 H 1.08992 * 109.47170 * 59.99900 * 1 2 3 29 29 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46462 * 299.99977 * 1 2 3 31 31 H 1.09002 * 109.46941 * 239.99945 * 2 1 3 32 32 H 1.09005 * 109.47426 * 120.00153 * 2 1 3 33 33 H 1.08999 * 109.47073 * 23.31318 * 4 3 2 34 34 H 1.08996 * 109.46836 * 143.30890 * 4 3 2 35 35 H 0.96996 * 119.99559 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99920 * 5.73995 * 17 15 13 37 37 H 1.07999 * 119.62705 * 0.02562 * 19 18 17 38 38 H 1.08001 * 119.45687 * 180.02562 * 20 19 18 39 39 H 1.08004 * 120.01901 * 180.23504 * 21 20 19 40 40 H 1.08005 * 120.16691 * 359.95498 * 23 22 21 41 41 H 1.08007 * 119.51409 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.51949 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.16051 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1614 2.1076 -1.2642 5 6 3.5904 2.0206 -1.7346 6 1 4.3193 1.4789 -1.1501 7 6 3.9675 2.6336 -2.9107 8 7 5.2148 2.5582 -3.3210 9 14 2.7070 3.5713 -3.9213 10 1 2.6764 4.9894 -3.4821 11 1 3.0766 3.5057 -5.3580 12 1 1.3659 2.9638 -3.7270 13 6 2.3361 1.9836 1.1629 14 8 2.1280 1.4177 2.2162 15 6 2.9443 3.3473 1.1556 16 8 3.1431 3.9175 0.1026 17 7 3.2726 3.9450 2.3182 18 6 3.7282 5.2621 2.3202 19 6 3.4000 6.1135 1.2861 20 6 3.8494 7.4302 1.2791 21 6 4.6245 7.9142 2.2889 22 6 4.9819 7.0794 3.3613 23 6 5.7803 7.5519 4.4174 24 6 6.1072 6.7162 5.4407 25 6 5.6616 5.3961 5.4588 26 6 4.8859 4.9049 4.4532 27 6 4.5285 5.7373 3.3813 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5047 1.6655 -2.0136 34 1 1.8908 3.1528 -1.1152 35 1 5.4800 2.9891 -4.1485 36 1 3.1918 3.4585 3.1535 37 1 2.7867 5.7544 0.4730 38 1 3.5796 8.0791 0.4590 39 1 4.9606 8.9404 2.2678 40 1 6.1327 8.5728 4.4166 41 1 6.7211 7.0817 6.2507 42 1 5.9354 4.7533 6.2823 43 1 4.5472 3.8796 4.4805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123801253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:54 Heat of formation + Delta-G solvation = 0.172286 kcal Electronic energy + Delta-G solvation = -27550.585427 eV Core-core repulsion = 23754.644083 eV Total energy + Delta-G solvation = -3795.941344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99662 -39.89414 -38.24588 -36.34908 -35.83318 -34.63053 -32.60970 -31.52238 -30.75355 -30.23423 -28.69435 -27.73378 -25.10984 -23.45019 -23.14299 -22.77292 -22.27692 -20.69382 -19.44972 -17.94778 -17.61691 -17.04367 -16.63865 -16.31849 -16.04962 -15.42343 -15.33296 -14.97858 -14.35501 -14.01160 -13.94413 -13.83524 -13.73734 -13.37860 -13.29664 -13.19878 -12.70186 -12.51489 -12.25209 -12.20694 -11.85303 -11.77627 -11.46787 -11.12708 -11.02684 -10.95232 -10.76244 -10.71430 -10.46362 -10.42286 -10.21022 -9.54876 -9.22441 -8.78666 -8.56720 -8.49412 -8.00220 -7.38244 -6.07808 -4.05329 0.55867 1.07207 1.78220 2.25221 2.72512 3.09031 3.29276 3.33890 3.36688 3.72903 3.93184 4.20808 4.40461 4.65281 4.76475 4.83773 4.86861 5.03252 5.21827 5.25823 5.33582 5.40085 5.41975 5.52991 5.55850 5.67565 5.72758 5.90306 5.92428 6.05259 6.15205 6.15904 6.33376 6.40886 6.42755 6.44627 6.48540 6.52094 6.67545 6.83021 6.88921 7.06951 7.15901 7.41241 7.54317 7.82437 8.14459 8.42348 8.54521 8.92254 9.52094 11.05678 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.004273 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.725453 B = 6550.815765 C = 7988.027183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.554 5.554 4 C 0.199 3.801 5 C -0.516 4.516 6 H 0.071 0.929 7 C 0.081 3.919 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.555 6.555 15 C 0.490 3.510 16 O -0.430 6.430 17 N -0.653 5.653 18 C 0.170 3.830 19 C -0.140 4.140 20 C -0.081 4.081 21 C -0.140 4.140 22 C -0.031 4.031 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.101 4.101 27 C -0.069 4.069 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.264 0.736 36 H 0.416 0.584 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 6.872 14.068 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.284 5.284 4 C 0.079 3.921 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.122 4.122 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.436 6.436 15 C 0.272 3.728 16 O -0.298 6.298 17 N -0.299 5.299 18 C 0.074 3.926 19 C -0.161 4.161 20 C -0.100 4.100 21 C -0.159 4.159 22 C -0.031 4.031 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.119 4.119 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.254 0.746 37 H 0.167 0.833 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.968 6.929 13.584 15.757 hybrid contribution -0.335 0.237 -0.357 0.544 sum -4.303 7.166 13.227 15.647 Atomic orbital electron populations 1.22118 0.96141 1.01820 1.02198 1.21485 0.93913 0.82343 1.03517 1.47948 1.59322 1.13578 1.07506 1.20303 0.98880 0.93017 0.79891 1.21069 0.92774 1.34244 1.07340 0.91042 1.24729 0.94999 0.95319 0.97148 1.69889 1.16448 1.44283 1.22836 0.86887 0.82049 0.81424 0.79486 1.19768 1.21310 1.19226 1.19664 0.80058 0.86422 0.84525 1.90665 1.55831 1.66278 1.30817 1.20381 0.80757 0.87964 0.83680 1.90894 1.46014 1.63772 1.29074 1.43123 1.64342 1.11700 1.10716 1.17661 0.95438 0.83667 0.95848 1.21433 1.02083 0.92809 0.99737 1.20741 0.96415 0.94994 0.97853 1.20896 1.01077 0.99466 0.94444 1.17857 0.97505 0.92363 0.95416 1.20987 0.98092 0.99809 0.93768 1.20813 1.00083 0.93951 0.98627 1.20757 0.98761 0.95834 0.98814 1.20874 0.98435 0.99101 0.93539 1.17775 0.99227 0.94420 0.95661 0.92388 0.91779 0.92589 0.89634 0.90178 0.95056 0.92770 0.92626 0.74647 0.83261 0.85647 0.85755 0.85607 0.86162 0.86032 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.85 6.11 -4.04 -0.02 1.83 16 3 N -0.55 -11.28 2.48 -175.62 -0.43 -11.71 16 4 C 0.20 4.57 3.86 -5.19 -0.02 4.55 16 5 C -0.52 -14.14 8.32 -34.44 -0.29 -14.43 16 6 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 9 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 C 0.51 10.32 7.67 -11.65 -0.09 10.23 16 14 O -0.56 -11.09 16.04 5.48 0.09 -11.00 16 15 C 0.49 9.80 7.52 -11.64 -0.09 9.72 16 16 O -0.43 -9.81 9.24 5.46 0.05 -9.76 16 17 N -0.65 -10.94 5.16 -10.09 -0.05 -11.00 16 18 C 0.17 2.82 6.45 -83.45 -0.54 2.28 16 19 C -0.14 -2.36 8.71 -39.37 -0.34 -2.70 16 20 C -0.08 -1.16 9.93 -39.99 -0.40 -1.56 16 21 C -0.14 -1.80 9.75 -39.46 -0.38 -2.18 16 22 C -0.03 -0.42 5.74 -106.84 -0.61 -1.03 16 23 C -0.11 -1.20 9.77 -39.47 -0.39 -1.59 16 24 C -0.12 -1.20 9.95 -39.94 -0.40 -1.60 16 25 C -0.12 -1.35 9.95 -39.92 -0.40 -1.75 16 26 C -0.10 -1.30 9.46 -39.54 -0.37 -1.67 16 27 C -0.07 -1.02 5.75 -106.69 -0.61 -1.64 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.42 8.11 -51.93 -0.42 0.99 16 32 H 0.08 1.32 7.36 -51.93 -0.38 0.94 16 33 H 0.03 0.70 7.08 -51.93 -0.37 0.33 16 34 H 0.05 1.28 5.28 -51.93 -0.27 1.00 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.42 6.06 6.69 -40.82 -0.27 5.78 16 37 H 0.15 2.78 5.69 -52.49 -0.30 2.48 16 38 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.42 6.69 -52.48 -0.35 1.06 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -32.55 357.72 -8.86 -41.41 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.34 Total: 7.95 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -4.67 Total: -1.26 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.29 Total: -49.16 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.14 Total: -20.76 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.55 -8.86 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123801253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.580 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds