Wall clock time and date at job start Tue Mar 31 2020 15:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47246 * 2 1 4 4 C 1.46507 * 120.00027 * 274.85100 * 3 2 1 5 5 C 1.50693 * 109.47094 * 263.31461 * 4 3 2 6 6 H 1.07999 * 120.00227 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99729 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99731 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00288 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46929 * 90.00147 * 9 7 5 11 11 H 1.48500 * 109.47275 * 210.00900 * 9 7 5 12 12 H 1.48506 * 109.47042 * 330.00514 * 9 7 5 13 13 C 1.34771 * 120.00313 * 94.85186 * 3 2 1 14 14 O 1.21367 * 119.99805 * 354.72534 * 13 3 2 15 15 C 1.49314 * 120.00314 * 174.71773 * 13 3 2 16 16 O 1.21390 * 120.00024 * 0.56945 * 15 13 3 17 17 N 1.34787 * 120.00092 * 180.56998 * 15 13 3 18 18 C 1.39359 * 119.99959 * 185.74135 * 17 15 13 19 19 C 1.37916 * 120.30624 * 23.96843 * 18 17 15 20 20 C 1.39122 * 120.74466 * 179.97438 * 19 18 17 21 21 C 1.36188 * 121.09335 * 0.06249 * 20 19 18 22 22 C 1.40524 * 119.96633 * 359.95681 * 21 20 19 23 23 C 1.40569 * 121.20564 * 180.02562 * 22 21 20 24 24 C 1.36101 * 119.66235 * 179.97438 * 23 22 21 25 25 C 1.39344 * 120.97470 * 359.97438 * 24 23 22 26 26 C 1.36166 * 120.95488 * 359.97438 * 25 24 23 27 27 C 1.40340 * 119.67707 * 0.02562 * 26 25 24 28 28 H 1.08992 * 109.47170 * 59.99900 * 1 2 3 29 29 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46462 * 299.99977 * 1 2 3 31 31 H 1.09002 * 109.46941 * 239.99945 * 2 1 3 32 32 H 1.09005 * 109.47426 * 120.00153 * 2 1 3 33 33 H 1.08999 * 109.47073 * 23.31318 * 4 3 2 34 34 H 1.08996 * 109.46836 * 143.30890 * 4 3 2 35 35 H 0.96996 * 119.99559 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99920 * 5.73995 * 17 15 13 37 37 H 1.07999 * 119.62705 * 0.02562 * 19 18 17 38 38 H 1.08001 * 119.45687 * 180.02562 * 20 19 18 39 39 H 1.08004 * 120.01901 * 180.23504 * 21 20 19 40 40 H 1.08005 * 120.16691 * 359.95498 * 23 22 21 41 41 H 1.08007 * 119.51409 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.51949 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.16051 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1614 2.1076 -1.2642 5 6 3.5904 2.0206 -1.7346 6 1 4.3193 1.4789 -1.1501 7 6 3.9675 2.6336 -2.9107 8 7 5.2148 2.5582 -3.3210 9 14 2.7070 3.5713 -3.9213 10 1 2.6764 4.9894 -3.4821 11 1 3.0766 3.5057 -5.3580 12 1 1.3659 2.9638 -3.7270 13 6 2.3361 1.9836 1.1629 14 8 2.1280 1.4177 2.2162 15 6 2.9443 3.3473 1.1556 16 8 3.1431 3.9175 0.1026 17 7 3.2726 3.9450 2.3182 18 6 3.7282 5.2621 2.3202 19 6 3.4000 6.1135 1.2861 20 6 3.8494 7.4302 1.2791 21 6 4.6245 7.9142 2.2889 22 6 4.9819 7.0794 3.3613 23 6 5.7803 7.5519 4.4174 24 6 6.1072 6.7162 5.4407 25 6 5.6616 5.3961 5.4588 26 6 4.8859 4.9049 4.4532 27 6 4.5285 5.7373 3.3813 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5047 1.6655 -2.0136 34 1 1.8908 3.1528 -1.1152 35 1 5.4800 2.9891 -4.1485 36 1 3.1918 3.4585 3.1535 37 1 2.7867 5.7544 0.4730 38 1 3.5796 8.0791 0.4590 39 1 4.9606 8.9404 2.2678 40 1 6.1327 8.5728 4.4166 41 1 6.7211 7.0817 6.2507 42 1 5.9354 4.7533 6.2823 43 1 4.5472 3.8796 4.4805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123801253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:53 Heat of formation + Delta-G solvation = -19.442407 kcal Electronic energy + Delta-G solvation = -27551.435984 eV Core-core repulsion = 23754.644083 eV Total energy + Delta-G solvation = -3796.791901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.35513 -41.16886 -39.69742 -37.71506 -37.14869 -35.96898 -34.67092 -32.60073 -32.24447 -31.24506 -29.88540 -29.53915 -26.53432 -24.65333 -24.53308 -24.16705 -23.54499 -21.92430 -20.89911 -19.24026 -19.14372 -18.87848 -17.95309 -17.79569 -17.14106 -16.91016 -16.65957 -16.43210 -15.99874 -15.49382 -15.27490 -14.97791 -14.84241 -14.74492 -14.54434 -14.40667 -14.35931 -13.93557 -13.70827 -13.51514 -13.24962 -13.07005 -12.67513 -12.64701 -12.51673 -12.23374 -12.10977 -12.00396 -11.91439 -11.88466 -11.67726 -11.63086 -10.76809 -10.34763 -10.25911 -9.68690 -9.57999 -8.50053 -8.26229 -6.27970 -0.49938 0.04992 0.34324 1.09593 1.27593 1.36936 1.41107 1.46764 2.02106 2.23696 2.36979 2.45366 3.11461 3.15755 3.26008 3.70786 3.83355 3.93006 4.10747 4.12367 4.30227 4.32535 4.33938 4.46048 4.47545 4.49093 4.65310 4.66612 4.85236 4.88232 4.90376 4.96840 5.01343 5.16445 5.27952 5.31547 5.36714 5.42837 5.46509 5.49186 5.56047 5.63615 5.90015 6.01697 6.07477 6.08828 6.33829 6.67095 6.68111 6.94594 7.33499 8.91169 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.004273 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.725453 B = 6550.815765 C = 7988.027183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.560 5.560 4 C 0.212 3.788 5 C -0.509 4.509 6 H 0.023 0.977 7 C 0.021 3.979 8 N -0.949 5.949 9 Si 0.939 3.061 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.236 1.236 13 C 0.508 3.492 14 O -0.554 6.554 15 C 0.487 3.513 16 O -0.468 6.468 17 N -0.637 5.637 18 C 0.139 3.861 19 C -0.158 4.158 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.053 4.053 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.129 4.129 27 C -0.082 4.082 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.265 0.735 36 H 0.424 0.576 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 8.336 15.902 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.290 5.290 4 C 0.090 3.910 5 C -0.547 4.547 6 H 0.041 0.959 7 C -0.177 4.177 8 N -0.590 5.590 9 Si 0.763 3.237 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.159 1.159 13 C 0.290 3.710 14 O -0.435 6.435 15 C 0.269 3.731 16 O -0.339 6.339 17 N -0.284 5.284 18 C 0.044 3.956 19 C -0.179 4.179 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.053 4.053 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.147 4.147 27 C -0.084 4.084 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.263 0.737 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.176 0.824 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.626 8.372 15.479 18.196 hybrid contribution 0.021 -0.199 -0.666 0.695 sum -4.606 8.173 14.813 17.534 Atomic orbital electron populations 1.22044 0.93403 1.03799 1.01934 1.21763 0.96139 0.80423 1.03656 1.48009 1.59602 1.14809 1.06613 1.20002 0.96099 0.93618 0.81252 1.21196 0.94137 1.32818 1.06550 0.95881 1.25621 0.97003 0.96408 0.98630 1.70051 1.18973 1.46236 1.23734 0.85843 0.80711 0.79657 0.77498 1.20032 1.20886 1.15908 1.19778 0.79971 0.86621 0.84632 1.90646 1.55861 1.66390 1.30611 1.20472 0.80634 0.87870 0.84127 1.90873 1.48152 1.64547 1.30363 1.42952 1.63352 1.12057 1.10052 1.17879 0.97329 0.83272 0.97148 1.21428 1.02691 0.94452 0.99349 1.20927 0.97645 0.94203 0.99440 1.21317 0.98817 1.00822 0.93020 1.18256 0.98360 0.91994 0.96735 1.21377 0.96852 1.01478 0.92737 1.21280 0.99487 0.93331 0.99185 1.21189 0.96693 0.96715 0.98409 1.21029 1.00152 0.99396 0.94150 1.18000 0.99191 0.95615 0.95598 0.92284 0.88664 0.93139 0.89545 0.90042 0.93256 0.92876 0.92658 0.73684 0.85809 0.84027 0.82170 0.82410 0.82578 0.83298 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 10.24 71.98 0.74 -3.27 16 2 C 0.10 3.37 6.11 86.38 0.53 3.90 16 3 N -0.56 -23.16 2.48 -827.90 -2.05 -25.21 16 4 C 0.21 9.81 3.86 85.63 0.33 10.14 16 5 C -0.51 -28.97 8.32 25.60 0.21 -28.76 16 6 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 7 C 0.02 1.22 5.47 84.66 0.46 1.68 16 8 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 9 Si 0.94 44.00 27.47 68.60 1.88 45.88 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 13 C 0.51 21.11 7.67 87.23 0.67 21.78 16 14 O -0.55 -22.40 16.04 -3.30 -0.05 -22.45 16 15 C 0.49 20.53 7.52 87.23 0.66 21.19 16 16 O -0.47 -22.68 9.24 -3.37 -0.03 -22.71 16 17 N -0.64 -22.58 5.16 -304.17 -1.57 -24.15 16 18 C 0.14 4.83 6.45 38.58 0.25 5.08 16 19 C -0.16 -5.67 8.71 22.41 0.20 -5.47 16 20 C -0.10 -2.98 9.93 22.00 0.22 -2.76 16 21 C -0.12 -2.92 9.75 22.35 0.22 -2.70 16 22 C -0.05 -1.35 5.74 -21.30 -0.12 -1.47 16 23 C -0.11 -1.98 9.77 22.34 0.22 -1.76 16 24 C -0.12 -1.90 9.95 22.04 0.22 -1.68 16 25 C -0.11 -2.14 9.95 22.05 0.22 -1.92 16 26 C -0.13 -3.22 9.46 22.30 0.21 -3.01 16 27 C -0.08 -2.44 5.75 -21.20 -0.12 -2.57 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 2.83 8.11 -2.39 -0.02 2.81 16 32 H 0.08 2.66 7.36 -2.38 -0.02 2.64 16 33 H 0.05 2.13 7.08 -2.39 -0.02 2.11 16 34 H 0.05 2.54 5.28 -2.39 -0.01 2.52 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.42 12.97 6.69 -92.71 -0.62 12.35 16 37 H 0.12 5.01 5.69 -2.91 -0.02 4.99 16 38 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.13 2.91 6.69 -2.91 -0.02 2.89 16 Total: -1.00 -74.87 357.72 3.95 -70.91 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.37 Total: 29.11 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.10 Total: 8.39 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -3.32 Total: -109.13 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.08 Total: -45.16 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Total: -74.87 3.95 -70.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123801253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.470 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds